Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:51682127-52363092

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rfx6 10 51677760 to 51730429 52669 + protein coding gene regulatory factor X, 6
4933411G06Rik 10 51756174 to 51757194 1020 - lincRNA gene RIKEN cDNA 4933411G06 gene
Tssr97566 10 51757158 to 51757170 12 - TSS region transcription start site region 97566
Tssr97567 10 51757189 to 51757201 12 - TSS region transcription start site region 97567
Gm47613 10 51757257 to 51761015 3758 + lincRNA gene predicted gene, 47613
Gm47614 10 51781993 to 51786941 4948 - lincRNA gene predicted gene, 47614
Tssr97568 10 51786940 to 51786968 28 - TSS region transcription start site region 97568
Gm23906 10 51888625 to 51888752 127 + snoRNA gene predicted gene, 23906
D10Mit89 10 51961080 to 51961197 117 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 89
Gm40646 10 51965300 to 51970400 5100 - lincRNA gene predicted gene, 40646
Tssr97569 10 51970261 to 51970268 7 - TSS region transcription start site region 97569
Gm47626 10 51986342 to 51989579 3237 - pseudogene predicted gene, 47626
Cpgi1531 10 52022127 to 52023092 965 CpG island CpG island 1531
Vgll2 10 52022502 to 52028471 5969 + protein coding gene vestigial like family member 2
Tssr93295 10 52022520 to 52022534 14 + TSS region transcription start site region 93295
Cpgi1532 10 52027311 to 52028129 818 CpG island CpG island 1532
Gm24084 10 52032251 to 52032387 136 + miRNA gene predicted gene, 24084
Ros1 10 52045721 to 52195244 149523 - protein coding gene Ros1 proto-oncogene
D10Mit56 10 52088104 to 52088238 134 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 56
Gm20630 10 52119319 to 52119869 550 - pseudogene predicted gene 20630
D10Mit256 10 52172337 to 52172460 123 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 256
Gm18513 10 52189248 to 52189807 559 + pseudogene predicted gene, 18513
Tssr3192 10 52193292 to 52193294 2 + TSS region transcription start site region 3192
Tssr97570 10 52194975 to 52194990 15 - TSS region transcription start site region 97570
Tssr97571 10 52195026 to 52195083 57 - TSS region transcription start site region 97571
Tssr97572 10 52195276 to 52195288 12 - TSS region transcription start site region 97572
Tssr97573 10 52195312 to 52195332 20 - TSS region transcription start site region 97573
Tssr97574 10 52195357 to 52195377 20 - TSS region transcription start site region 97574
Cpgi1533 10 52233344 to 52234358 1014 CpG island CpG island 1533
Tssr93296 10 52233612 to 52233672 60 + TSS region transcription start site region 93296
Dcbld1 10 52233619 to 52321378 87759 + protein coding gene discoidin, CUB and LCCL domain containing 1
Tssr93297 10 52276798 to 52276842 44 + TSS region transcription start site region 93297
Cpgi1534 10 52319404 to 52320047 643 CpG island CpG island 1534
Tssr93298 10 52319873 to 52319884 11 + TSS region transcription start site region 93298
Gopc 10 52337024 to 52382124 45100 - protein coding gene golgi associated PDZ and coiled-coil motif containing
Gm6627 10 52341272 to 52343657 2385 - pseudogene predicted gene 6627
Tssr97575 10 52343659 to 52343674 15 - TSS region transcription start site region 97575
Gm26741 10 52358767 to 52358853 86 + protein coding gene predicted gene, 26741