Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:50814451-52154472

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ascc3 10 50592669 to 50851202 258533 + protein coding gene activating signal cointegrator 1 complex subunit 3
Tssr93223 10 50819582 to 50819599 17 + TSS region transcription start site region 93223
Gm23883 10 50866075 to 50866364 289 - unclassified non-coding RNA gene predicted gene, 23883
A230054N11Rik 10 50889157 to 50894534 5377 - lncRNA gene RIKEN cDNA A230054N11 gene
Cpgi1524 10 50894182 to 50895439 1257 CpG island CpG island 1524
Tssr97551 10 50894494 to 50894516 22 - TSS region transcription start site region 97551
Tssr93224 10 50894740 to 50894762 22 + TSS region transcription start site region 93224
Sim1 10 50894754 to 50989152 94398 + protein coding gene single-minded family bHLH transcription factor 1
Cpgi1525 10 50900671 to 50901409 738 CpG island CpG island 1525
Cpgi1526 10 50902922 to 50903666 744 CpG island CpG island 1526
Tssr93225 10 50903089 to 50903099 10 + TSS region transcription start site region 93225
Cpgi1527 10 50904403 to 50904900 497 CpG island CpG island 1527
Tssr93226 10 50907398 to 50907399 1 + TSS region transcription start site region 93226
Cpgi1528 10 50910443 to 50910788 345 CpG island CpG island 1528
Tssr93227 10 50969361 to 50969365 4 + TSS region transcription start site region 93227
Gm35917 10 51175871 to 51187091 11220 - lncRNA gene predicted gene, 35917
Gm26257 10 51182299 to 51182405 106 + snRNA gene predicted gene, 26257
Gm5040 10 51238829 to 51239628 799 + pseudogene predicted gene 5040
Tssr93228 10 51451803 to 51451808 5 + TSS region transcription start site region 93228
Tssr97552 10 51454013 to 51454038 25 - TSS region transcription start site region 97552
Tssr93229 10 51454694 to 51454708 14 + TSS region transcription start site region 93229
Tssr93230 10 51459258 to 51459265 7 + TSS region transcription start site region 93230
Tssr93231 10 51459930 to 51459934 4 + TSS region transcription start site region 93231
Gm46189 10 51460604 to 51461310 706 + pseudogene predicted gene, 46189
Tssr93232 10 51480236 to 51480255 19 + TSS region transcription start site region 93232
Tssr97553 10 51480434 to 51480443 9 - TSS region transcription start site region 97553
Lilr4b 10 51480612 to 51486329 5717 + protein coding gene leukocyte immunoglobulin-like receptor, subfamily B, member 4B
Gm49339 10 51480612 to 51496613 16001 + protein coding gene predicted gene, 49339
Tssr93233 10 51480813 to 51480834 21 + TSS region transcription start site region 93233
Tssr93234 10 51480839 to 51480850 11 + TSS region transcription start site region 93234
Tssr93235 10 51481132 to 51481144 12 + TSS region transcription start site region 93235
Tssr93236 10 51481618 to 51481656 38 + TSS region transcription start site region 93236
Tssr93237 10 51481657 to 51481674 17 + TSS region transcription start site region 93237
Tssr93238 10 51481681 to 51481691 10 + TSS region transcription start site region 93238
Tssr93239 10 51481706 to 51481720 14 + TSS region transcription start site region 93239
Tssr93240 10 51481723 to 51481742 19 + TSS region transcription start site region 93240
Tssr93241 10 51481745 to 51481752 7 + TSS region transcription start site region 93241
Tssr93242 10 51481785 to 51481798 13 + TSS region transcription start site region 93242
Tssr93243 10 51482578 to 51482613 35 + TSS region transcription start site region 93243
Tssr93244 10 51482844 to 51482884 40 + TSS region transcription start site region 93244
Tssr93245 10 51483367 to 51483420 53 + TSS region transcription start site region 93245
Tssr93246 10 51483583 to 51483605 22 + TSS region transcription start site region 93246
Tssr93247 10 51483629 to 51483648 19 + TSS region transcription start site region 93247
Tssr93248 10 51483677 to 51483689 12 + TSS region transcription start site region 93248
Tssr93249 10 51483822 to 51483855 33 + TSS region transcription start site region 93249
Tssr93250 10 51484309 to 51484316 7 + TSS region transcription start site region 93250
Tssr93251 10 51484348 to 51484377 29 + TSS region transcription start site region 93251
Tssr93252 10 51484451 to 51484472 21 + TSS region transcription start site region 93252
Tssr93253 10 51484646 to 51484668 22 + TSS region transcription start site region 93253
Tssr93254 10 51484773 to 51484801 28 + TSS region transcription start site region 93254
Tssr93255 10 51485000 to 51485019 19 + TSS region transcription start site region 93255
Tssr93256 10 51485112 to 51485122 10 + TSS region transcription start site region 93256
Tssr93257 10 51485475 to 51485507 32 + TSS region transcription start site region 93257
Tssr93258 10 51485710 to 51485747 37 + TSS region transcription start site region 93258
Tssr97554 10 51485749 to 51485785 36 - TSS region transcription start site region 97554
Tssr93259 10 51485752 to 51485762 10 + TSS region transcription start site region 93259
Tssr97555 10 51486311 to 51486328 17 - TSS region transcription start site region 97555
Lilrb4a 10 51490956 to 51496611 5655 + protein coding gene leukocyte immunoglobulin-like receptor, subfamily B, member 4A
Tssr93260 10 51491111 to 51491128 17 + TSS region transcription start site region 93260
Tssr93261 10 51491139 to 51491153 14 + TSS region transcription start site region 93261
Tssr93262 10 51491426 to 51491440 14 + TSS region transcription start site region 93262
Tssr93263 10 51491505 to 51491533 28 + TSS region transcription start site region 93263
Tssr93264 10 51491596 to 51491656 60 + TSS region transcription start site region 93264
Tssr93265 10 51491897 to 51491950 53 + TSS region transcription start site region 93265
Tssr93266 10 51491951 to 51491964 13 + TSS region transcription start site region 93266
Tssr93267 10 51491973 to 51492038 65 + TSS region transcription start site region 93267
Tssr93268 10 51492051 to 51492066 15 + TSS region transcription start site region 93268
Tssr93269 10 51492078 to 51492095 17 + TSS region transcription start site region 93269
Tssr93270 10 51492726 to 51492741 15 + TSS region transcription start site region 93270
Tssr93271 10 51492841 to 51492859 18 + TSS region transcription start site region 93271
Tssr93272 10 51492893 to 51492914 21 + TSS region transcription start site region 93272
Tssr93273 10 51493154 to 51493185 31 + TSS region transcription start site region 93273
Tssr93274 10 51493644 to 51493718 74 + TSS region transcription start site region 93274
Tssr93275 10 51493811 to 51493851 40 + TSS region transcription start site region 93275
Tssr93276 10 51493883 to 51493905 22 + TSS region transcription start site region 93276
Tssr93277 10 51493934 to 51493953 19 + TSS region transcription start site region 93277
Tssr93278 10 51493978 to 51493989 11 + TSS region transcription start site region 93278
Tssr93279 10 51494122 to 51494145 23 + TSS region transcription start site region 93279
Tssr97556 10 51494469 to 51494511 42 - TSS region transcription start site region 97556
Tssr93280 10 51494581 to 51494592 11 + TSS region transcription start site region 93280
Tssr93281 10 51494621 to 51494640 19 + TSS region transcription start site region 93281
Tssr93282 10 51494645 to 51494658 13 + TSS region transcription start site region 93282
Tssr93283 10 51494722 to 51494748 26 + TSS region transcription start site region 93283
Tssr97557 10 51494834 to 51494848 14 - TSS region transcription start site region 97557
Tssr93284 10 51495056 to 51495116 60 + TSS region transcription start site region 93284
Tssr93285 10 51495281 to 51495300 19 + TSS region transcription start site region 93285
Tssr93286 10 51495395 to 51495403 8 + TSS region transcription start site region 93286
Tssr93287 10 51495757 to 51495787 30 + TSS region transcription start site region 93287
Tssr93288 10 51496017 to 51496038 21 + TSS region transcription start site region 93288
Tssr97558 10 51496021 to 51496060 39 - TSS region transcription start site region 97558
Tssr93289 10 51496085 to 51496090 5 + TSS region transcription start site region 93289
Tssr97559 10 51496491 to 51496502 11 - TSS region transcription start site region 97559
Tssr97560 10 51496587 to 51496600 13 - TSS region transcription start site region 97560
Gm48484 10 51511874 to 51512162 288 + pseudogene predicted gene, 48484
D10Mit58 10 51520004 to 51520110 106 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 58
Gm40645 10 51520783 to 51527404 6621 - antisense lncRNA gene predicted gene, 40645
Tssr97561 10 51522432 to 51522458 26 - TSS region transcription start site region 97561
Tssr97562 10 51526220 to 51526237 17 - TSS region transcription start site region 97562
Tssr93290 10 51526329 to 51526360 31 + TSS region transcription start site region 93290
Tssr93291 10 51526401 to 51526439 38 + TSS region transcription start site region 93291
Tssr97563 10 51527316 to 51527323 7 - TSS region transcription start site region 97563
Gm46224 10 51527757 to 51531161 3404 + lincRNA gene predicted gene, 46224
Tssr93292 10 51528013 to 51528071 58 + TSS region transcription start site region 93292
Tssr93293 10 51533837 to 51533849 12 + TSS region transcription start site region 93293
Gm48786 10 51543035 to 51546848 3813 + pseudogene predicted gene, 48786
Gm48787 10 51551069 to 51551447 378 - pseudogene predicted gene, 48787
Gm48788 10 51568949 to 51574134 5185 + pseudogene predicted gene, 48788
Fam162b 10 51585416 to 51590517 5101 - protein coding gene family with sequence similarity 162, member B
Cpgi1529 10 51590282 to 51590505 223 CpG island CpG island 1529
Tssr97564 10 51590439 to 51590464 25 - TSS region transcription start site region 97564
Tssr97565 10 51590473 to 51590497 24 - TSS region transcription start site region 97565
Tssr3191 10 51597373 to 51597390 17 - TSS region transcription start site region 3191
Gprc6a 10 51614823 to 51631458 16635 - protein coding gene G protein-coupled receptor, family C, group 6, member A
D10Mit141 10 51617304 to 51617452 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 141
Cia8 10 51617304 to 82655287 31037983 QTL collagen induced arthritis QTL 8
1700042O05Rik 10 51666989 to 51675831 8842 + lincRNA gene RIKEN cDNA 1700042O05 gene
Cpgi1530 10 51677582 to 51678078 496 CpG island CpG island 1530
Rfx6 10 51677760 to 51730429 52669 + protein coding gene regulatory factor X, 6
Tssr93294 10 51677766 to 51677789 23 + TSS region transcription start site region 93294
4933411G06Rik 10 51756174 to 51757194 1020 - lincRNA gene RIKEN cDNA 4933411G06 gene
Tssr97566 10 51757158 to 51757170 12 - TSS region transcription start site region 97566
Tssr97567 10 51757189 to 51757201 12 - TSS region transcription start site region 97567
Gm47613 10 51757257 to 51761015 3758 + lincRNA gene predicted gene, 47613
Gm47614 10 51781993 to 51786941 4948 - lincRNA gene predicted gene, 47614
Tssr97568 10 51786940 to 51786968 28 - TSS region transcription start site region 97568
Gm23906 10 51888625 to 51888752 127 + snoRNA gene predicted gene, 23906
D10Mit89 10 51961080 to 51961197 117 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 89
Gm40646 10 51965300 to 51970400 5100 - lincRNA gene predicted gene, 40646
Tssr97569 10 51970261 to 51970268 7 - TSS region transcription start site region 97569
Gm47626 10 51986342 to 51989579 3237 - pseudogene predicted gene, 47626
Cpgi1531 10 52022127 to 52023092 965 CpG island CpG island 1531
Vgll2 10 52022502 to 52028471 5969 + protein coding gene vestigial like family member 2
Tssr93295 10 52022520 to 52022534 14 + TSS region transcription start site region 93295
Cpgi1532 10 52027311 to 52028129 818 CpG island CpG island 1532
Gm24084 10 52032251 to 52032387 136 + miRNA gene predicted gene, 24084
Ros1 10 52045721 to 52195244 149523 - protein coding gene Ros1 proto-oncogene
D10Mit56 10 52088104 to 52088238 134 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 56
Gm20630 10 52119319 to 52119869 550 - pseudogene predicted gene 20630