Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:5003243-5973255

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Esr1 10 4611989 to 5005633 393644 + protein coding gene estrogen receptor 1 (alpha)
Tssr92280 10 5003430 to 5003435 5 + TSS region transcription start site region 92280
Syne1 10 5020192 to 5550692 530500 - protein coding gene spectrin repeat containing, nuclear envelope 1
5330421C15Rik 10 5023496 to 5029002 5506 unclassified gene RIKEN cDNA 5330421C15 gene
Tssr3117 10 5032271 to 5032276 5 + TSS region transcription start site region 3117
Gm25694 10 5036175 to 5036456 281 - ribozyme gene predicted gene, 25694
Tssr96516 10 5068914 to 5068958 44 - TSS region transcription start site region 96516
Tssr96517 10 5069044 to 5069079 35 - TSS region transcription start site region 96517
Gm10097 10 5069192 to 5071975 2783 + protein coding gene predicted gene 10097
Gm48836 10 5091006 to 5091286 280 - pseudogene predicted gene, 48836
Tssr3118 10 5149015 to 5149019 4 + TSS region transcription start site region 3118
Tssr92281 10 5185279 to 5185282 3 + TSS region transcription start site region 92281
Tssr96518 10 5185526 to 5185546 20 - TSS region transcription start site region 96518
Tssr96519 10 5185549 to 5185578 29 - TSS region transcription start site region 96519
Cpgi1261 10 5194446 to 5194850 404 CpG island CpG island 1261
Tssr96520 10 5194700 to 5194763 63 - TSS region transcription start site region 96520
Tssr96521 10 5194783 to 5194812 29 - TSS region transcription start site region 96521
Tssr96522 10 5194859 to 5194871 12 - TSS region transcription start site region 96522
Tssr96523 10 5195036 to 5195054 18 - TSS region transcription start site region 96523
Tssr96524 10 5289377 to 5289391 14 - TSS region transcription start site region 96524
Tssr96525 10 5289397 to 5289436 39 - TSS region transcription start site region 96525
Tssr96526 10 5289456 to 5289467 11 - TSS region transcription start site region 96526
Tssr96527 10 5299012 to 5299026 14 - TSS region transcription start site region 96527
Tssr96528 10 5309404 to 5309451 47 - TSS region transcription start site region 96528
Tssr3119 10 5310006 to 5310009 3 + TSS region transcription start site region 3119
Tssr96529 10 5312530 to 5312571 41 - TSS region transcription start site region 96529
Tssr96530 10 5338883 to 5338897 14 - TSS region transcription start site region 96530
Gm23573 10 5357173 to 5357279 106 + snRNA gene predicted gene, 23573
Tssr96531 10 5367636 to 5367659 23 - TSS region transcription start site region 96531
Tssr96532 10 5367688 to 5367700 12 - TSS region transcription start site region 96532
Tssr96533 10 5367706 to 5367723 17 - TSS region transcription start site region 96533
Tssr96534 10 5367724 to 5367770 46 - TSS region transcription start site region 96534
Tssr3120 10 5367835 to 5367868 33 - TSS region transcription start site region 3120
Tssr96535 10 5368273 to 5368287 14 - TSS region transcription start site region 96535
Tssr96536 10 5368373 to 5368399 26 - TSS region transcription start site region 96536
Tssr96537 10 5368450 to 5368462 12 - TSS region transcription start site region 96537
Tssr96538 10 5368485 to 5368497 12 - TSS region transcription start site region 96538
Tssr96539 10 5368505 to 5368527 22 - TSS region transcription start site region 96539
Tssr96540 10 5424331 to 5424356 25 - TSS region transcription start site region 96540
Tssr96541 10 5424372 to 5424382 10 - TSS region transcription start site region 96541
Gm40594 10 5468718 to 5472634 3916 + lncRNA gene predicted gene, 40594
Tssr96542 10 5488188 to 5488195 7 - TSS region transcription start site region 96542
Tssr96543 10 5488200 to 5488237 37 - TSS region transcription start site region 96543
Tssr96544 10 5488243 to 5488255 12 - TSS region transcription start site region 96544
Tssr96545 10 5488267 to 5488289 22 - TSS region transcription start site region 96545
Tssr96546 10 5514120 to 5514124 4 - TSS region transcription start site region 96546
Tssr96547 10 5548684 to 5548723 39 - TSS region transcription start site region 96547
Tssr92282 10 5548716 to 5548718 2 + TSS region transcription start site region 92282
Tssr92283 10 5548799 to 5548833 34 + TSS region transcription start site region 92283
Cpgi1260 10 5550112 to 5550964 852 CpG island CpG island 1260
Tssr96548 10 5550128 to 5550138 10 - TSS region transcription start site region 96548
Tssr96549 10 5550141 to 5550163 22 - TSS region transcription start site region 96549
Tssr96550 10 5550549 to 5550562 13 - TSS region transcription start site region 96550
Tssr96551 10 5550565 to 5550598 33 - TSS region transcription start site region 96551
Tssr96552 10 5550599 to 5550613 14 - TSS region transcription start site region 96552
Tssr96553 10 5550615 to 5550631 16 - TSS region transcription start site region 96553
Tssr96554 10 5550636 to 5550706 70 - TSS region transcription start site region 96554
Tssr96555 10 5550708 to 5550735 27 - TSS region transcription start site region 96555
Tssr96556 10 5550798 to 5550807 9 - TSS region transcription start site region 96556
Tssr96557 10 5550809 to 5550835 26 - TSS region transcription start site region 96557
Tssr3121 10 5550851 to 5550868 17 - TSS region transcription start site region 3121
Tssr164703 10 5557246 to 5557247 1 - TSS region transcription start site region 164703
Tssr96558 10 5593517 to 5593524 7 - TSS region transcription start site region 96558
Tssr3122 10 5593541 to 5593550 9 - TSS region transcription start site region 3122
Tssr92284 10 5593718 to 5593739 21 + TSS region transcription start site region 92284
Myct1 10 5593728 to 5606789 13061 + protein coding gene myc target 1
Tssr92285 10 5593764 to 5593809 45 + TSS region transcription start site region 92285
Tssr92286 10 5593810 to 5593821 11 + TSS region transcription start site region 92286
Tssr92287 10 5593823 to 5593855 32 + TSS region transcription start site region 92287
Tssr92288 10 5594772 to 5594775 3 + TSS region transcription start site region 92288
Tssr92289 10 5639210 to 5639225 15 + TSS region transcription start site region 92289
Vip 10 5639218 to 5647617 8399 + protein coding gene vasoactive intestinal polypeptide
Tssr92290 10 5664195 to 5664198 3 + TSS region transcription start site region 92290
Tssr96559 10 5712002 to 5712009 7 - TSS region transcription start site region 96559
Gm40595 10 5721485 to 5724198 2713 + protein coding gene predicted gene, 40595
Gm47679 10 5735819 to 5736938 1119 + pseudogene predicted gene, 47679
Gm30617 10 5784832 to 5791511 6679 - lncRNA gene predicted gene, 30617
Fbxo5 10 5799158 to 5805465 6307 - protein coding gene F-box protein 5
Tssr96560 10 5804598 to 5804623 25 - TSS region transcription start site region 96560
Cpgi1259 10 5804673 to 5806230 1557 CpG island CpG island 1259
Tssr96561 10 5805353 to 5805364 11 - TSS region transcription start site region 96561
Tssr96562 10 5805394 to 5805408 14 - TSS region transcription start site region 96562
Tssr96563 10 5805412 to 5805454 42 - TSS region transcription start site region 96563
D10Mit1009 10 5807258 to 5807352 94 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1009
Mtrf1l 10 5811887 to 5823910 12023 - protein coding gene mitochondrial translational release factor 1-like
Cpgi1258 10 5823344 to 5824493 1149 CpG island CpG island 1258
Tssr96564 10 5823819 to 5823873 54 - TSS region transcription start site region 96564
Tssr96565 10 5823880 to 5823937 57 - TSS region transcription start site region 96565
Rgs17 10 5825663 to 5922400 96737 - protein coding gene regulator of G-protein signaling 17
Tssr96566 10 5828020 to 5828034 14 - TSS region transcription start site region 96566
Tssr96567 10 5828097 to 5828108 11 - TSS region transcription start site region 96567
Gm18902 10 5848464 to 5849565 1101 - pseudogene predicted gene, 18902
Cpgi1257 10 5921375 to 5922806 1431 CpG island CpG island 1257
Tssr96568 10 5922325 to 5922328 3 - TSS region transcription start site region 96568
Tssr96569 10 5922341 to 5922384 43 - TSS region transcription start site region 96569
Tssr96570 10 5922385 to 5922407 22 - TSS region transcription start site region 96570