Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:50007548-51177558

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D10Mit217 10 50041150 to 50041263 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 217
Gm40642 10 50057034 to 50116140 59106 - lncRNA gene predicted gene, 40642
Gm48132 10 50179151 to 50182994 3843 - pseudogene predicted gene, 48132
Gm48269 10 50183039 to 50184149 1110 - pseudogene predicted gene, 48269
Gm35632 10 50203273 to 50252189 48916 + lncRNA gene predicted gene, 35632
Tssr93209 10 50252981 to 50252983 2 + TSS region transcription start site region 93209
Gm48270 10 50255675 to 50259522 3847 + pseudogene predicted gene, 48270
Gm48271 10 50292646 to 50296142 3496 - unclassified gene predicted gene, 48271
Gm48273 10 50333764 to 50334749 985 - unclassified gene predicted gene, 48273
Tssr93210 10 50356594 to 50356598 4 + TSS region transcription start site region 93210
Gm46223 10 50422134 to 50422808 674 - protein coding gene predicted gene, 46223
Gm40643 10 50422864 to 50423861 997 - lncRNA gene predicted gene, 40643
Gm48274 10 50424086 to 50424340 254 + unclassified gene predicted gene, 48274
Gm48275 10 50425044 to 50425330 286 - lincRNA gene predicted gene, 48275
Gm6991 10 50480996 to 50482169 1173 + pseudogene predicted gene 6991
Tssr97546 10 50520945 to 50520959 14 - TSS region transcription start site region 97546
Gm46199 10 50522287 to 50523270 983 - pseudogene predicted gene, 46199
Tssr97547 10 50589579 to 50589586 7 - TSS region transcription start site region 97547
Tssr97548 10 50589600 to 50589623 23 - TSS region transcription start site region 97548
Cpgi1523 10 50592340 to 50593255 915 CpG island CpG island 1523
Tssr97549 10 50592360 to 50592389 29 - TSS region transcription start site region 97549
Tssr97550 10 50592548 to 50592558 10 - TSS region transcription start site region 97550
Ascc3 10 50592669 to 50851202 258533 + protein coding gene activating signal cointegrator 1 complex subunit 3
Tssr93211 10 50592670 to 50592739 69 + TSS region transcription start site region 93211
Tssr93212 10 50620800 to 50620807 7 + TSS region transcription start site region 93212
Tssr93213 10 50662553 to 50662562 9 + TSS region transcription start site region 93213
Tssr93214 10 50666286 to 50666291 5 + TSS region transcription start site region 93214
Gm48332 10 50696472 to 50696841 369 + unclassified gene predicted gene, 48332
D10Mit57 10 50700861 to 50701003 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 57
Tssr93215 10 50727185 to 50727199 14 + TSS region transcription start site region 93215
Tssr93216 10 50729911 to 50729939 28 + TSS region transcription start site region 93216
D10Wsu159e 10 50749915 to 50750140 225 DNA segment DNA segment, Chr 10, Wayne State University 159, expressed
Gm18120 10 50758184 to 50758694 510 + pseudogene predicted gene, 18120
Tssr93217 10 50773364 to 50773372 8 + TSS region transcription start site region 93217
Tssr93218 10 50777203 to 50777226 23 + TSS region transcription start site region 93218
Tssr93219 10 50779483 to 50779492 9 + TSS region transcription start site region 93219
D10Mit147 10 50788802 to 50788902 100 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 147
Tssr93220 10 50792268 to 50792283 15 + TSS region transcription start site region 93220
Tssr93221 10 50797989 to 50798005 16 + TSS region transcription start site region 93221
Tssr93222 10 50803781 to 50803793 12 + TSS region transcription start site region 93222
Gm48333 10 50813725 to 50813990 265 + pseudogene predicted gene, 48333
Tssr93223 10 50819582 to 50819599 17 + TSS region transcription start site region 93223
Gm23883 10 50866075 to 50866364 289 - unclassified non-coding RNA gene predicted gene, 23883
A230054N11Rik 10 50889157 to 50894534 5377 - lncRNA gene RIKEN cDNA A230054N11 gene
Cpgi1524 10 50894182 to 50895439 1257 CpG island CpG island 1524
Tssr97551 10 50894494 to 50894516 22 - TSS region transcription start site region 97551
Tssr93224 10 50894740 to 50894762 22 + TSS region transcription start site region 93224
Sim1 10 50894754 to 50989152 94398 + protein coding gene single-minded family bHLH transcription factor 1
Cpgi1525 10 50900671 to 50901409 738 CpG island CpG island 1525
Cpgi1526 10 50902922 to 50903666 744 CpG island CpG island 1526
Tssr93225 10 50903089 to 50903099 10 + TSS region transcription start site region 93225
Cpgi1527 10 50904403 to 50904900 497 CpG island CpG island 1527
Tssr93226 10 50907398 to 50907399 1 + TSS region transcription start site region 93226
Cpgi1528 10 50910443 to 50910788 345 CpG island CpG island 1528
Tssr93227 10 50969361 to 50969365 4 + TSS region transcription start site region 93227
Gm35917 10 51175871 to 51187091 11220 - lncRNA gene predicted gene, 35917