Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:4995036-5395054

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Esr1 10 4611989 to 5005633 393644 + protein coding gene estrogen receptor 1 (alpha)
Tssr92280 10 5003430 to 5003435 5 + TSS region transcription start site region 92280
Syne1 10 5020192 to 5550692 530500 - protein coding gene spectrin repeat containing, nuclear envelope 1
5330421C15Rik 10 5023496 to 5029002 5506 unclassified gene RIKEN cDNA 5330421C15 gene
Tssr3117 10 5032271 to 5032276 5 + TSS region transcription start site region 3117
Gm25694 10 5036175 to 5036456 281 - ribozyme gene predicted gene, 25694
Tssr96516 10 5068914 to 5068958 44 - TSS region transcription start site region 96516
Tssr96517 10 5069044 to 5069079 35 - TSS region transcription start site region 96517
Gm10097 10 5069192 to 5071975 2783 + protein coding gene predicted gene 10097
Gm48836 10 5091006 to 5091286 280 - pseudogene predicted gene, 48836
Tssr3118 10 5149015 to 5149019 4 + TSS region transcription start site region 3118
Tssr92281 10 5185279 to 5185282 3 + TSS region transcription start site region 92281
Tssr96518 10 5185526 to 5185546 20 - TSS region transcription start site region 96518
Tssr96519 10 5185549 to 5185578 29 - TSS region transcription start site region 96519
Cpgi1261 10 5194446 to 5194850 404 CpG island CpG island 1261
Tssr96520 10 5194700 to 5194763 63 - TSS region transcription start site region 96520
Tssr96521 10 5194783 to 5194812 29 - TSS region transcription start site region 96521
Tssr96522 10 5194859 to 5194871 12 - TSS region transcription start site region 96522
Tssr96523 10 5195036 to 5195054 18 - TSS region transcription start site region 96523
Tssr96524 10 5289377 to 5289391 14 - TSS region transcription start site region 96524
Tssr96525 10 5289397 to 5289436 39 - TSS region transcription start site region 96525
Tssr96526 10 5289456 to 5289467 11 - TSS region transcription start site region 96526
Tssr96527 10 5299012 to 5299026 14 - TSS region transcription start site region 96527
Tssr96528 10 5309404 to 5309451 47 - TSS region transcription start site region 96528
Tssr3119 10 5310006 to 5310009 3 + TSS region transcription start site region 3119
Tssr96529 10 5312530 to 5312571 41 - TSS region transcription start site region 96529
Tssr96530 10 5338883 to 5338897 14 - TSS region transcription start site region 96530
Gm23573 10 5357173 to 5357279 106 + snRNA gene predicted gene, 23573
Tssr96531 10 5367636 to 5367659 23 - TSS region transcription start site region 96531
Tssr96532 10 5367688 to 5367700 12 - TSS region transcription start site region 96532
Tssr96533 10 5367706 to 5367723 17 - TSS region transcription start site region 96533
Tssr96534 10 5367724 to 5367770 46 - TSS region transcription start site region 96534
Tssr3120 10 5367835 to 5367868 33 - TSS region transcription start site region 3120
Tssr96535 10 5368273 to 5368287 14 - TSS region transcription start site region 96535
Tssr96536 10 5368373 to 5368399 26 - TSS region transcription start site region 96536
Tssr96537 10 5368450 to 5368462 12 - TSS region transcription start site region 96537
Tssr96538 10 5368485 to 5368497 12 - TSS region transcription start site region 96538
Tssr96539 10 5368505 to 5368527 22 - TSS region transcription start site region 96539
Wght8 10 44000000 to 5000000 -39000000 QTL weight 8