Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:48066270-51590115

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D10Mit170 10 48098403 to 48098534 131 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 170
Phl2 10 48098403 to 70276821 22178418 QTL progressive hearing loss 2
Heal16 10 48098403 to 48098534 131 QTL wound healing/regeneration 16
Gm47353 10 48411355 to 48411667 312 - unclassified gene predicted gene, 47353
Gm23584 10 48437822 to 48437950 128 + snoRNA gene predicted gene, 23584
Gm47354 10 48534981 to 48536356 1375 - lincRNA gene predicted gene, 47354
Gm47355 10 48566168 to 48569999 3831 + pseudogene predicted gene, 47355
Gm24256 10 48619312 to 48619395 83 - snRNA gene predicted gene, 24256
Gm47356 10 48678011 to 48681857 3846 - pseudogene predicted gene, 47356
Gm47364 10 48682690 to 48682973 283 + pseudogene predicted gene, 47364
Gm47377 10 48692852 to 48694412 1560 + pseudogene predicted gene, 47377
Bmch4 10 48701040 to 48701188 148 QTL bone mechanical trait 4
D10Mit40 10 48701040 to 48701188 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 40
D10Mit36 10 48701045 to 48701188 143 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 36
Gm47379 10 48810278 to 48810481 203 - pseudogene predicted gene, 47379
Gm3473 10 48852431 to 48853526 1095 + pseudogene predicted gene 3473
Gm47378 10 48868578 to 48870245 1667 + unclassified gene predicted gene, 47378
Gm47380 10 48910116 to 48910533 417 + unclassified gene predicted gene, 47380
Grik2 10 49094842 to 49789255 694413 - protein coding gene glutamate receptor, ionotropic, kainate 2 (beta 2)
Gm47017 10 49188994 to 49192365 3371 - unclassified gene predicted gene, 47017
Gm18512 10 49199715 to 49200261 546 + pseudogene predicted gene, 18512
Tssr97535 10 49218373 to 49218376 3 - TSS region transcription start site region 97535
Tssr97536 10 49218974 to 49218978 4 - TSS region transcription start site region 97536
Gm26543 10 49219422 to 49225653 6231 - sense intronic lncRNA gene predicted gene, 26543
Tssr97537 10 49231890 to 49231897 7 - TSS region transcription start site region 97537
Gm47018 10 49236915 to 49237861 946 - sense intronic lncRNA gene predicted gene, 47018
Tssr97538 10 49272808 to 49272833 25 - TSS region transcription start site region 97538
Tssr97539 10 49364425 to 49364450 25 - TSS region transcription start site region 97539
Gm47023 10 49482000 to 49484479 2479 - unclassified gene predicted gene, 47023
Tssr97540 10 49534098 to 49534104 6 - TSS region transcription start site region 97540
Gm47016 10 49661647 to 49663273 1626 - unclassified gene predicted gene, 47016
Gm47022 10 49700363 to 49702834 2471 - unclassified gene predicted gene, 47022
A730043B01Rik 10 49706666 to 49707887 1221 unclassified gene RIKEN cDNA A730043B01 gene
Tssr97541 10 49710633 to 49710639 6 - TSS region transcription start site region 97541
Tssr97542 10 49723052 to 49723064 12 - TSS region transcription start site region 97542
Cpgi1521 10 49783011 to 49783466 455 CpG island CpG island 1521
Tssr97543 10 49783490 to 49783582 92 - TSS region transcription start site region 97543
Tssr97544 10 49783673 to 49783727 54 - TSS region transcription start site region 97544
Cpgi1522 10 49788236 to 49789229 993 CpG island CpG island 1522
Tssr97545 10 49788743 to 49788769 26 - TSS region transcription start site region 97545
Gm48123 10 49788827 to 49790167 1340 + unclassified gene predicted gene, 48123
Gm48125 10 49799325 to 49801079 1754 + unclassified gene predicted gene, 48125
Gm48128 10 49826270 to 49830115 3845 + pseudogene predicted gene, 48128
Tssr3190 10 49832025 to 49832029 4 + TSS region transcription start site region 3190
Gm48130 10 49955660 to 49955981 321 - pseudogene predicted gene, 48130
Gm48131 10 49980034 to 49981881 1847 - unclassified gene predicted gene, 48131
D10Mit217 10 50041150 to 50041263 113 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 217
Gm40642 10 50057034 to 50116140 59106 - lncRNA gene predicted gene, 40642
Gm48132 10 50179151 to 50182994 3843 - pseudogene predicted gene, 48132
Gm48269 10 50183039 to 50184149 1110 - pseudogene predicted gene, 48269
Gm35632 10 50203273 to 50252189 48916 + lncRNA gene predicted gene, 35632
Tssr93209 10 50252981 to 50252983 2 + TSS region transcription start site region 93209
Gm48270 10 50255675 to 50259522 3847 + pseudogene predicted gene, 48270
Gm48271 10 50292646 to 50296142 3496 - unclassified gene predicted gene, 48271
Gm48273 10 50333764 to 50334749 985 - unclassified gene predicted gene, 48273
Tssr93210 10 50356594 to 50356598 4 + TSS region transcription start site region 93210
Gm46223 10 50422134 to 50422808 674 - protein coding gene predicted gene, 46223
Gm40643 10 50422864 to 50423861 997 - lncRNA gene predicted gene, 40643
Gm48274 10 50424086 to 50424340 254 + unclassified gene predicted gene, 48274
Gm48275 10 50425044 to 50425330 286 - lincRNA gene predicted gene, 48275
Gm6991 10 50480996 to 50482169 1173 + pseudogene predicted gene 6991
Tssr97546 10 50520945 to 50520959 14 - TSS region transcription start site region 97546
Gm46199 10 50522287 to 50523270 983 - pseudogene predicted gene, 46199
Tssr97547 10 50589579 to 50589586 7 - TSS region transcription start site region 97547
Tssr97548 10 50589600 to 50589623 23 - TSS region transcription start site region 97548
Cpgi1523 10 50592340 to 50593255 915 CpG island CpG island 1523
Tssr97549 10 50592360 to 50592389 29 - TSS region transcription start site region 97549
Tssr97550 10 50592548 to 50592558 10 - TSS region transcription start site region 97550
Ascc3 10 50592669 to 50851202 258533 + protein coding gene activating signal cointegrator 1 complex subunit 3
Tssr93211 10 50592670 to 50592739 69 + TSS region transcription start site region 93211
Tssr93212 10 50620800 to 50620807 7 + TSS region transcription start site region 93212
Tssr93213 10 50662553 to 50662562 9 + TSS region transcription start site region 93213
Tssr93214 10 50666286 to 50666291 5 + TSS region transcription start site region 93214
Gm48332 10 50696472 to 50696841 369 + unclassified gene predicted gene, 48332
D10Mit57 10 50700861 to 50701003 142 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 57
Tssr93215 10 50727185 to 50727199 14 + TSS region transcription start site region 93215
Tssr93216 10 50729911 to 50729939 28 + TSS region transcription start site region 93216
D10Wsu159e 10 50749915 to 50750140 225 DNA segment DNA segment, Chr 10, Wayne State University 159, expressed
Gm18120 10 50758184 to 50758694 510 + pseudogene predicted gene, 18120
Tssr93217 10 50773364 to 50773372 8 + TSS region transcription start site region 93217
Tssr93218 10 50777203 to 50777226 23 + TSS region transcription start site region 93218
Tssr93219 10 50779483 to 50779492 9 + TSS region transcription start site region 93219
D10Mit147 10 50788802 to 50788902 100 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 147
Tssr93220 10 50792268 to 50792283 15 + TSS region transcription start site region 93220
Tssr93221 10 50797989 to 50798005 16 + TSS region transcription start site region 93221
Tssr93222 10 50803781 to 50803793 12 + TSS region transcription start site region 93222
Gm48333 10 50813725 to 50813990 265 + pseudogene predicted gene, 48333
Tssr93223 10 50819582 to 50819599 17 + TSS region transcription start site region 93223
Gm23883 10 50866075 to 50866364 289 - unclassified non-coding RNA gene predicted gene, 23883
A230054N11Rik 10 50889157 to 50894534 5377 - lncRNA gene RIKEN cDNA A230054N11 gene
Cpgi1524 10 50894182 to 50895439 1257 CpG island CpG island 1524
Tssr97551 10 50894494 to 50894516 22 - TSS region transcription start site region 97551
Tssr93224 10 50894740 to 50894762 22 + TSS region transcription start site region 93224
Sim1 10 50894754 to 50989152 94398 + protein coding gene single-minded family bHLH transcription factor 1
Cpgi1525 10 50900671 to 50901409 738 CpG island CpG island 1525
Cpgi1526 10 50902922 to 50903666 744 CpG island CpG island 1526
Tssr93225 10 50903089 to 50903099 10 + TSS region transcription start site region 93225
Cpgi1527 10 50904403 to 50904900 497 CpG island CpG island 1527
Tssr93226 10 50907398 to 50907399 1 + TSS region transcription start site region 93226
Cpgi1528 10 50910443 to 50910788 345 CpG island CpG island 1528
Tssr93227 10 50969361 to 50969365 4 + TSS region transcription start site region 93227
Gm35917 10 51175871 to 51187091 11220 - lncRNA gene predicted gene, 35917
Gm26257 10 51182299 to 51182405 106 + snRNA gene predicted gene, 26257
Gm5040 10 51238829 to 51239628 799 + pseudogene predicted gene 5040
Tssr93228 10 51451803 to 51451808 5 + TSS region transcription start site region 93228
Tssr97552 10 51454013 to 51454038 25 - TSS region transcription start site region 97552
Tssr93229 10 51454694 to 51454708 14 + TSS region transcription start site region 93229
Tssr93230 10 51459258 to 51459265 7 + TSS region transcription start site region 93230
Tssr93231 10 51459930 to 51459934 4 + TSS region transcription start site region 93231
Gm46189 10 51460604 to 51461310 706 + pseudogene predicted gene, 46189
Tssr93232 10 51480236 to 51480255 19 + TSS region transcription start site region 93232
Tssr97553 10 51480434 to 51480443 9 - TSS region transcription start site region 97553
Lilr4b 10 51480612 to 51486329 5717 + protein coding gene leukocyte immunoglobulin-like receptor, subfamily B, member 4B
Gm49339 10 51480612 to 51496613 16001 + protein coding gene predicted gene, 49339
Tssr93233 10 51480813 to 51480834 21 + TSS region transcription start site region 93233
Tssr93234 10 51480839 to 51480850 11 + TSS region transcription start site region 93234
Tssr93235 10 51481132 to 51481144 12 + TSS region transcription start site region 93235
Tssr93236 10 51481618 to 51481656 38 + TSS region transcription start site region 93236
Tssr93237 10 51481657 to 51481674 17 + TSS region transcription start site region 93237
Tssr93238 10 51481681 to 51481691 10 + TSS region transcription start site region 93238
Tssr93239 10 51481706 to 51481720 14 + TSS region transcription start site region 93239
Tssr93240 10 51481723 to 51481742 19 + TSS region transcription start site region 93240
Tssr93241 10 51481745 to 51481752 7 + TSS region transcription start site region 93241
Tssr93242 10 51481785 to 51481798 13 + TSS region transcription start site region 93242
Tssr93243 10 51482578 to 51482613 35 + TSS region transcription start site region 93243
Tssr93244 10 51482844 to 51482884 40 + TSS region transcription start site region 93244
Tssr93245 10 51483367 to 51483420 53 + TSS region transcription start site region 93245
Tssr93246 10 51483583 to 51483605 22 + TSS region transcription start site region 93246
Tssr93247 10 51483629 to 51483648 19 + TSS region transcription start site region 93247
Tssr93248 10 51483677 to 51483689 12 + TSS region transcription start site region 93248
Tssr93249 10 51483822 to 51483855 33 + TSS region transcription start site region 93249
Tssr93250 10 51484309 to 51484316 7 + TSS region transcription start site region 93250
Tssr93251 10 51484348 to 51484377 29 + TSS region transcription start site region 93251
Tssr93252 10 51484451 to 51484472 21 + TSS region transcription start site region 93252
Tssr93253 10 51484646 to 51484668 22 + TSS region transcription start site region 93253
Tssr93254 10 51484773 to 51484801 28 + TSS region transcription start site region 93254
Tssr93255 10 51485000 to 51485019 19 + TSS region transcription start site region 93255
Tssr93256 10 51485112 to 51485122 10 + TSS region transcription start site region 93256
Tssr93257 10 51485475 to 51485507 32 + TSS region transcription start site region 93257
Tssr93258 10 51485710 to 51485747 37 + TSS region transcription start site region 93258
Tssr97554 10 51485749 to 51485785 36 - TSS region transcription start site region 97554
Tssr93259 10 51485752 to 51485762 10 + TSS region transcription start site region 93259
Tssr97555 10 51486311 to 51486328 17 - TSS region transcription start site region 97555
Lilrb4a 10 51490956 to 51496611 5655 + protein coding gene leukocyte immunoglobulin-like receptor, subfamily B, member 4A
Tssr93260 10 51491111 to 51491128 17 + TSS region transcription start site region 93260
Tssr93261 10 51491139 to 51491153 14 + TSS region transcription start site region 93261
Tssr93262 10 51491426 to 51491440 14 + TSS region transcription start site region 93262
Tssr93263 10 51491505 to 51491533 28 + TSS region transcription start site region 93263
Tssr93264 10 51491596 to 51491656 60 + TSS region transcription start site region 93264
Tssr93265 10 51491897 to 51491950 53 + TSS region transcription start site region 93265
Tssr93266 10 51491951 to 51491964 13 + TSS region transcription start site region 93266
Tssr93267 10 51491973 to 51492038 65 + TSS region transcription start site region 93267
Tssr93268 10 51492051 to 51492066 15 + TSS region transcription start site region 93268
Tssr93269 10 51492078 to 51492095 17 + TSS region transcription start site region 93269
Tssr93270 10 51492726 to 51492741 15 + TSS region transcription start site region 93270
Tssr93271 10 51492841 to 51492859 18 + TSS region transcription start site region 93271
Tssr93272 10 51492893 to 51492914 21 + TSS region transcription start site region 93272
Tssr93273 10 51493154 to 51493185 31 + TSS region transcription start site region 93273
Tssr93274 10 51493644 to 51493718 74 + TSS region transcription start site region 93274
Tssr93275 10 51493811 to 51493851 40 + TSS region transcription start site region 93275
Tssr93276 10 51493883 to 51493905 22 + TSS region transcription start site region 93276
Tssr93277 10 51493934 to 51493953 19 + TSS region transcription start site region 93277
Tssr93278 10 51493978 to 51493989 11 + TSS region transcription start site region 93278
Tssr93279 10 51494122 to 51494145 23 + TSS region transcription start site region 93279
Tssr97556 10 51494469 to 51494511 42 - TSS region transcription start site region 97556
Tssr93280 10 51494581 to 51494592 11 + TSS region transcription start site region 93280
Tssr93281 10 51494621 to 51494640 19 + TSS region transcription start site region 93281
Tssr93282 10 51494645 to 51494658 13 + TSS region transcription start site region 93282
Tssr93283 10 51494722 to 51494748 26 + TSS region transcription start site region 93283
Tssr97557 10 51494834 to 51494848 14 - TSS region transcription start site region 97557
Tssr93284 10 51495056 to 51495116 60 + TSS region transcription start site region 93284
Tssr93285 10 51495281 to 51495300 19 + TSS region transcription start site region 93285
Tssr93286 10 51495395 to 51495403 8 + TSS region transcription start site region 93286
Tssr93287 10 51495757 to 51495787 30 + TSS region transcription start site region 93287
Tssr93288 10 51496017 to 51496038 21 + TSS region transcription start site region 93288
Tssr97558 10 51496021 to 51496060 39 - TSS region transcription start site region 97558
Tssr93289 10 51496085 to 51496090 5 + TSS region transcription start site region 93289
Tssr97559 10 51496491 to 51496502 11 - TSS region transcription start site region 97559
Tssr97560 10 51496587 to 51496600 13 - TSS region transcription start site region 97560
Gm48484 10 51511874 to 51512162 288 + pseudogene predicted gene, 48484
D10Mit58 10 51520004 to 51520110 106 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 58
Gm40645 10 51520783 to 51527404 6621 - antisense lncRNA gene predicted gene, 40645
Tssr97561 10 51522432 to 51522458 26 - TSS region transcription start site region 97561
Tssr97562 10 51526220 to 51526237 17 - TSS region transcription start site region 97562
Tssr93290 10 51526329 to 51526360 31 + TSS region transcription start site region 93290
Tssr93291 10 51526401 to 51526439 38 + TSS region transcription start site region 93291
Tssr97563 10 51527316 to 51527323 7 - TSS region transcription start site region 97563
Gm46224 10 51527757 to 51531161 3404 + lincRNA gene predicted gene, 46224
Tssr93292 10 51528013 to 51528071 58 + TSS region transcription start site region 93292
Tssr93293 10 51533837 to 51533849 12 + TSS region transcription start site region 93293
Gm48786 10 51543035 to 51546848 3813 + pseudogene predicted gene, 48786
Gm48787 10 51551069 to 51551447 378 - pseudogene predicted gene, 48787
Gm48788 10 51568949 to 51574134 5185 + pseudogene predicted gene, 48788
Fam162b 10 51585416 to 51590517 5101 - protein coding gene family with sequence similarity 162, member B