Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:4486518-5476534

Filter by:
65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc170 10 4482502 to 4562231 79729 + protein coding gene coiled-coil domain containing 170
Tssr96515 10 4568210 to 4568215 5 - TSS region transcription start site region 96515
Gm3266 10 4569633 to 4570223 590 - pseudogene predicted gene 3266
Tssr92262 10 4605830 to 4605875 45 + TSS region transcription start site region 92262
Tssr92263 10 4611620 to 4611633 13 + TSS region transcription start site region 92263
Tssr92264 10 4611813 to 4611823 10 + TSS region transcription start site region 92264
Tssr92265 10 4611838 to 4611863 25 + TSS region transcription start site region 92265
Tssr92266 10 4611870 to 4611880 10 + TSS region transcription start site region 92266
Tssr92267 10 4611945 to 4611958 13 + TSS region transcription start site region 92267
Tssr92268 10 4611971 to 4612015 44 + TSS region transcription start site region 92268
Esr1 10 4611989 to 5005633 393644 + protein coding gene estrogen receptor 1 (alpha)
Tssr92269 10 4612051 to 4612067 16 + TSS region transcription start site region 92269
Tssr92270 10 4709815 to 4709862 47 + TSS region transcription start site region 92270
Cpgi1263 10 4709999 to 4710306 307 CpG island CpG island 1263
Tssr92271 10 4710119 to 4710166 47 + TSS region transcription start site region 92271
Tssr92272 10 4710167 to 4710186 19 + TSS region transcription start site region 92272
Tssr92273 10 4710193 to 4710204 11 + TSS region transcription start site region 92273
Tssr92274 10 4711674 to 4711685 11 + TSS region transcription start site region 92274
Cpgi1262 10 4712030 to 4713084 1054 CpG island CpG island 1262
Tssr92275 10 4819487 to 4819491 4 + TSS region transcription start site region 92275
Tssr92276 10 4862315 to 4862319 4 + TSS region transcription start site region 92276
Tssr92277 10 4863445 to 4863457 12 + TSS region transcription start site region 92277
Tssr92278 10 4959586 to 4959591 5 + TSS region transcription start site region 92278
Tssr92279 10 4981518 to 4981534 16 + TSS region transcription start site region 92279
Tssr92280 10 5003430 to 5003435 5 + TSS region transcription start site region 92280
Syne1 10 5020192 to 5550692 530500 - protein coding gene spectrin repeat containing, nuclear envelope 1
5330421C15Rik 10 5023496 to 5029002 5506 unclassified gene RIKEN cDNA 5330421C15 gene
Tssr3117 10 5032271 to 5032276 5 + TSS region transcription start site region 3117
Gm25694 10 5036175 to 5036456 281 - ribozyme gene predicted gene, 25694
Tssr96516 10 5068914 to 5068958 44 - TSS region transcription start site region 96516
Tssr96517 10 5069044 to 5069079 35 - TSS region transcription start site region 96517
Gm10097 10 5069192 to 5071975 2783 + protein coding gene predicted gene 10097
Gm48836 10 5091006 to 5091286 280 - pseudogene predicted gene, 48836
Tssr3118 10 5149015 to 5149019 4 + TSS region transcription start site region 3118
Tssr92281 10 5185279 to 5185282 3 + TSS region transcription start site region 92281
Tssr96518 10 5185526 to 5185546 20 - TSS region transcription start site region 96518
Tssr96519 10 5185549 to 5185578 29 - TSS region transcription start site region 96519
Cpgi1261 10 5194446 to 5194850 404 CpG island CpG island 1261
Tssr96520 10 5194700 to 5194763 63 - TSS region transcription start site region 96520
Tssr96521 10 5194783 to 5194812 29 - TSS region transcription start site region 96521
Tssr96522 10 5194859 to 5194871 12 - TSS region transcription start site region 96522
Tssr96523 10 5195036 to 5195054 18 - TSS region transcription start site region 96523
Tssr96524 10 5289377 to 5289391 14 - TSS region transcription start site region 96524
Tssr96525 10 5289397 to 5289436 39 - TSS region transcription start site region 96525
Tssr96526 10 5289456 to 5289467 11 - TSS region transcription start site region 96526
Tssr96527 10 5299012 to 5299026 14 - TSS region transcription start site region 96527
Tssr96528 10 5309404 to 5309451 47 - TSS region transcription start site region 96528
Tssr3119 10 5310006 to 5310009 3 + TSS region transcription start site region 3119
Tssr96529 10 5312530 to 5312571 41 - TSS region transcription start site region 96529
Tssr96530 10 5338883 to 5338897 14 - TSS region transcription start site region 96530
Gm23573 10 5357173 to 5357279 106 + snRNA gene predicted gene, 23573
Tssr96531 10 5367636 to 5367659 23 - TSS region transcription start site region 96531
Tssr96532 10 5367688 to 5367700 12 - TSS region transcription start site region 96532
Tssr96533 10 5367706 to 5367723 17 - TSS region transcription start site region 96533
Tssr96534 10 5367724 to 5367770 46 - TSS region transcription start site region 96534
Tssr3120 10 5367835 to 5367868 33 - TSS region transcription start site region 3120
Tssr96535 10 5368273 to 5368287 14 - TSS region transcription start site region 96535
Tssr96536 10 5368373 to 5368399 26 - TSS region transcription start site region 96536
Tssr96537 10 5368450 to 5368462 12 - TSS region transcription start site region 96537
Tssr96538 10 5368485 to 5368497 12 - TSS region transcription start site region 96538
Tssr96539 10 5368505 to 5368527 22 - TSS region transcription start site region 96539
Tssr96540 10 5424331 to 5424356 25 - TSS region transcription start site region 96540
Tssr96541 10 5424372 to 5424382 10 - TSS region transcription start site region 96541
Gm40594 10 5468718 to 5472634 3916 + lncRNA gene predicted gene, 40594
Wght8 10 44000000 to 5000000 -39000000 QTL weight 8