Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:44468384-44868494

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prdm1 10 44437177 to 44528501 91324 - protein coding gene PR domain containing 1, with ZNF domain
Tssr93170 10 44468839 to 44468848 9 + TSS region transcription start site region 93170
Tssr97517 10 44470709 to 44470721 12 - TSS region transcription start site region 97517
Tssr93171 10 44475987 to 44475996 9 + TSS region transcription start site region 93171
Cpgi1513 10 44527012 to 44527436 424 CpG island CpG island 1513
Cpgi1514 10 44529257 to 44529927 670 CpG island CpG island 1514
Gm48061 10 44580517 to 44590238 9721 - lincRNA gene predicted gene, 48061
Gm5950 10 44589928 to 44592573 2645 + pseudogene predicted gene 5950
Gm22087 10 44597240 to 44597327 87 - snRNA gene predicted gene, 22087
Gm48065 10 44597889 to 44602174 4285 - lincRNA gene predicted gene, 48065
Gm35154 10 44599113 to 44689114 90001 + lincRNA gene predicted gene, 35154
Tssr93172 10 44599816 to 44599868 52 + TSS region transcription start site region 93172
Tssr93173 10 44599877 to 44599906 29 + TSS region transcription start site region 93173
Tssr97518 10 44602167 to 44602193 26 - TSS region transcription start site region 97518
Tssr93174 10 44611821 to 44611841 20 + TSS region transcription start site region 93174
Tssr93175 10 44612001 to 44612012 11 + TSS region transcription start site region 93175
Tssr97519 10 44631661 to 44631686 25 - TSS region transcription start site region 97519
Gm48066 10 44647518 to 44662496 14978 + lincRNA gene predicted gene, 48066
Gm27977 10 44668384 to 44668494 110 + rRNA gene predicted gene, 27977
Tssr93176 10 44686246 to 44686250 4 + TSS region transcription start site region 93176
Gm47388 10 44697180 to 44699931 2751 + unclassified gene predicted gene, 47388
Gm47389 10 44715558 to 44717165 1607 + lincRNA gene predicted gene, 47389
D10Jcs17 10 44716771 to 44717057 286 DNA segment DNA segment, Chr 10, John C. Schimenti 17
4930431F10Rik 10 44730777 to 44738900 8123 - lincRNA gene RIKEN cDNA 4930431F10 gene
Gm47392 10 44730940 to 44823886 92946 + lincRNA gene predicted gene, 47392
Tssr93177 10 44731007 to 44731016 9 + TSS region transcription start site region 93177
Gm22503 10 44732353 to 44732467 114 + snRNA gene predicted gene, 22503
Gm18250 10 44742713 to 44743412 699 pseudogene predicted gene, 18250
Gm47398 10 44851393 to 44866786 15393 - lincRNA gene predicted gene, 47398
Tssr93178 10 44852589 to 44852590 1 + TSS region transcription start site region 93178
Gm6983 10 44852614 to 44853241 627 + pseudogene predicted gene 6983
Tssr97520 10 44866794 to 44866799 5 - TSS region transcription start site region 97520