Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:44288839-44648848

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg5 10 44268358 to 44364291 95933 + protein coding gene autophagy related 5
Gm19229 10 44335782 to 44336301 519 - pseudogene predicted gene, 19229
Tssr93169 10 44358392 to 44358398 6 + TSS region transcription start site region 93169
Mir1929 10 44359676 to 44359768 92 + miRNA gene microRNA 1929
Gm35028 10 44418400 to 44424324 5924 - lincRNA gene predicted gene, 35028
Tssr97508 10 44423980 to 44423995 15 - TSS region transcription start site region 97508
Prdm1 10 44437177 to 44528501 91324 - protein coding gene PR domain containing 1, with ZNF domain
Tssr97509 10 44441223 to 44441257 34 - TSS region transcription start site region 97509
Cpgi1511 10 44457176 to 44457500 324 CpG island CpG island 1511
Cpgi1512 10 44458424 to 44459110 686 CpG island CpG island 1512
Tssr97510 10 44458569 to 44458584 15 - TSS region transcription start site region 97510
Tssr97511 10 44458668 to 44458681 13 - TSS region transcription start site region 97511
Tssr97512 10 44458687 to 44458714 27 - TSS region transcription start site region 97512
Tssr97513 10 44458715 to 44458751 36 - TSS region transcription start site region 97513
Tssr97514 10 44458769 to 44458784 15 - TSS region transcription start site region 97514
Tssr97515 10 44460960 to 44460967 7 - TSS region transcription start site region 97515
Tssr97516 10 44464195 to 44464215 20 - TSS region transcription start site region 97516
Tssr93170 10 44468839 to 44468848 9 + TSS region transcription start site region 93170
Tssr97517 10 44470709 to 44470721 12 - TSS region transcription start site region 97517
Tssr93171 10 44475987 to 44475996 9 + TSS region transcription start site region 93171
Cpgi1513 10 44527012 to 44527436 424 CpG island CpG island 1513
Cpgi1514 10 44529257 to 44529927 670 CpG island CpG island 1514
Gm48061 10 44580517 to 44590238 9721 - lincRNA gene predicted gene, 48061
Gm5950 10 44589928 to 44592573 2645 + pseudogene predicted gene 5950
Gm22087 10 44597240 to 44597327 87 - snRNA gene predicted gene, 22087
Gm48065 10 44597889 to 44602174 4285 - lincRNA gene predicted gene, 48065
Gm35154 10 44599113 to 44689114 90001 + lincRNA gene predicted gene, 35154
Tssr93172 10 44599816 to 44599868 52 + TSS region transcription start site region 93172
Tssr93173 10 44599877 to 44599906 29 + TSS region transcription start site region 93173
Tssr97518 10 44602167 to 44602193 26 - TSS region transcription start site region 97518
Tssr93174 10 44611821 to 44611841 20 + TSS region transcription start site region 93174
Tssr93175 10 44612001 to 44612012 11 + TSS region transcription start site region 93175
Tssr97519 10 44631661 to 44631686 25 - TSS region transcription start site region 97519
Gm48066 10 44647518 to 44662496 14978 + lincRNA gene predicted gene, 48066