Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:44272244-46802350

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atg5 10 44268358 to 44364291 95933 + protein coding gene autophagy related 5
Gm19229 10 44335782 to 44336301 519 - pseudogene predicted gene, 19229
Tssr93169 10 44358392 to 44358398 6 + TSS region transcription start site region 93169
Mir1929 10 44359676 to 44359768 92 + miRNA gene microRNA 1929
Gm35028 10 44418400 to 44424324 5924 - lincRNA gene predicted gene, 35028
Tssr97508 10 44423980 to 44423995 15 - TSS region transcription start site region 97508
Prdm1 10 44437177 to 44528501 91324 - protein coding gene PR domain containing 1, with ZNF domain
Tssr97509 10 44441223 to 44441257 34 - TSS region transcription start site region 97509
Cpgi1511 10 44457176 to 44457500 324 CpG island CpG island 1511
Cpgi1512 10 44458424 to 44459110 686 CpG island CpG island 1512
Tssr97510 10 44458569 to 44458584 15 - TSS region transcription start site region 97510
Tssr97511 10 44458668 to 44458681 13 - TSS region transcription start site region 97511
Tssr97512 10 44458687 to 44458714 27 - TSS region transcription start site region 97512
Tssr97513 10 44458715 to 44458751 36 - TSS region transcription start site region 97513
Tssr97514 10 44458769 to 44458784 15 - TSS region transcription start site region 97514
Tssr97515 10 44460960 to 44460967 7 - TSS region transcription start site region 97515
Tssr97516 10 44464195 to 44464215 20 - TSS region transcription start site region 97516
Tssr93170 10 44468839 to 44468848 9 + TSS region transcription start site region 93170
Tssr97517 10 44470709 to 44470721 12 - TSS region transcription start site region 97517
Tssr93171 10 44475987 to 44475996 9 + TSS region transcription start site region 93171
Cpgi1513 10 44527012 to 44527436 424 CpG island CpG island 1513
Cpgi1514 10 44529257 to 44529927 670 CpG island CpG island 1514
Gm48061 10 44580517 to 44590238 9721 - lincRNA gene predicted gene, 48061
Gm5950 10 44589928 to 44592573 2645 + pseudogene predicted gene 5950
Gm22087 10 44597240 to 44597327 87 - snRNA gene predicted gene, 22087
Gm48065 10 44597889 to 44602174 4285 - lincRNA gene predicted gene, 48065
Gm35154 10 44599113 to 44689114 90001 + lincRNA gene predicted gene, 35154
Tssr93172 10 44599816 to 44599868 52 + TSS region transcription start site region 93172
Tssr93173 10 44599877 to 44599906 29 + TSS region transcription start site region 93173
Tssr97518 10 44602167 to 44602193 26 - TSS region transcription start site region 97518
Tssr93174 10 44611821 to 44611841 20 + TSS region transcription start site region 93174
Tssr93175 10 44612001 to 44612012 11 + TSS region transcription start site region 93175
Tssr97519 10 44631661 to 44631686 25 - TSS region transcription start site region 97519
Gm48066 10 44647518 to 44662496 14978 + lincRNA gene predicted gene, 48066
Gm27977 10 44668384 to 44668494 110 + rRNA gene predicted gene, 27977
Tssr93176 10 44686246 to 44686250 4 + TSS region transcription start site region 93176
Gm47388 10 44697180 to 44699931 2751 + unclassified gene predicted gene, 47388
Gm47389 10 44715558 to 44717165 1607 + lincRNA gene predicted gene, 47389
D10Jcs17 10 44716771 to 44717057 286 DNA segment DNA segment, Chr 10, John C. Schimenti 17
4930431F10Rik 10 44730777 to 44738900 8123 - lincRNA gene RIKEN cDNA 4930431F10 gene
Gm47392 10 44730940 to 44823886 92946 + lincRNA gene predicted gene, 47392
Tssr93177 10 44731007 to 44731016 9 + TSS region transcription start site region 93177
Gm22503 10 44732353 to 44732467 114 + snRNA gene predicted gene, 22503
Gm18250 10 44742713 to 44743412 699 pseudogene predicted gene, 18250
Gm47398 10 44851393 to 44866786 15393 - lincRNA gene predicted gene, 47398
Tssr93178 10 44852589 to 44852590 1 + TSS region transcription start site region 93178
Gm6983 10 44852614 to 44853241 627 + pseudogene predicted gene 6983
Tssr97520 10 44866794 to 44866799 5 - TSS region transcription start site region 97520
Gm40638 10 44902617 to 44943276 40659 - lincRNA gene predicted gene, 40638
Gm24271 10 44922067 to 44922177 110 - miRNA gene predicted gene, 24271
D10Mit148 10 44999904 to 45000035 131 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 148
Gm4795 10 45006110 to 45007117 1007 + pseudogene predicted pseudogene 4795
Gm40639 10 45024302 to 45028152 3850 + lincRNA gene predicted gene, 40639
D10Mit216 10 45041557 to 45041664 107 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 216
Tssr97521 10 45048696 to 45048705 9 - TSS region transcription start site region 97521
2310075K07Rik 10 45064937 to 45067332 2395 - unclassified non-coding RNA gene RIKEN cDNA 2310075K07 gene
Cpgi1515 10 45066585 to 45067986 1401 CpG island CpG island 1515
Tssr93179 10 45067035 to 45067042 7 + TSS region transcription start site region 93179
Tssr93180 10 45067073 to 45067088 15 + TSS region transcription start site region 93180
Tssr93181 10 45067167 to 45067279 112 + TSS region transcription start site region 93181
Prep 10 45067214 to 45159981 92767 + protein coding gene prolyl endopeptidase
Tssr93182 10 45067292 to 45067303 11 + TSS region transcription start site region 93182
Gm23766 10 45095629 to 45095708 79 - miRNA gene predicted gene, 23766
C87926 10 45101199 to 45101939 740 unclassified gene cDNA sequence, C87926
Tssr93183 10 45107513 to 45107522 9 + TSS region transcription start site region 93183
Tssr93184 10 45107532 to 45107573 41 + TSS region transcription start site region 93184
Tssr93185 10 45107581 to 45107588 7 + TSS region transcription start site region 93185
Gm27723 10 45247087 to 45247149 62 + snRNA gene predicted gene, 27723
Gm26016 10 45268603 to 45268731 128 - snoRNA gene predicted gene, 26016
Gm15934 10 45287311 to 45289424 2113 - antisense lncRNA gene predicted gene 15934
Tssr93186 10 45289168 to 45289202 34 + TSS region transcription start site region 93186
Cpgi1516 10 45289170 to 45289981 811 CpG island CpG island 1516
Tssr97522 10 45289256 to 45289262 6 - TSS region transcription start site region 97522
Popdc3 10 45289305 to 45318450 29145 + protein coding gene popeye domain containing 3
Tssr93187 10 45289348 to 45289430 82 + TSS region transcription start site region 93187
Tssr97523 10 45289690 to 45289700 10 - TSS region transcription start site region 97523
Gm47433 10 45297809 to 45298271 462 - pseudogene predicted gene, 47433
Cpgi1517 10 45335177 to 45336260 1083 CpG island CpG island 1517
Tssr93188 10 45335723 to 45335744 21 + TSS region transcription start site region 93188
Tssr93189 10 45335751 to 45335789 38 + TSS region transcription start site region 93189
Bves 10 45335762 to 45369708 33946 + protein coding gene blood vessel epicardial substance
Tssr93190 10 45335886 to 45335897 11 + TSS region transcription start site region 93190
Tssr93191 10 45335905 to 45335927 22 + TSS region transcription start site region 93191
Tssr93192 10 45336304 to 45336308 4 + TSS region transcription start site region 93192
Lin28b 10 45376620 to 45486395 109775 - protein coding gene lin-28 homolog B (C. elegans)
Gm35372 10 45444863 to 45461197 16334 + lncRNA gene predicted gene, 35372
Tssr93193 10 45452145 to 45452147 2 + TSS region transcription start site region 93193
D10Ertd755e 10 45464780 to 45464982 202 DNA segment DNA segment, Chr 10, ERATO Doi 755, expressed
Tssr97524 10 45470249 to 45470260 11 - TSS region transcription start site region 97524
Cpgi1518 10 45485543 to 45487057 1514 CpG island CpG island 1518
Tssr97525 10 45486363 to 45486384 21 - TSS region transcription start site region 97525
Tssr97526 10 45486420 to 45486436 16 - TSS region transcription start site region 97526
Tssr97527 10 45486442 to 45486461 19 - TSS region transcription start site region 97527
Gm27731 10 45537244 to 45537350 106 + miRNA gene predicted gene, 27731
Dbil5-ps 10 45543277 to 45543980 703 - pseudogene diazepam binding inhibitor-like 5, pseudogene
Gm3805 10 45577483 to 45578117 634 unclassified gene predicted gene 3805
Cpgi1519 10 45577643 to 45578860 1217 CpG island CpG island 1519
Tssr93194 10 45577811 to 45577914 103 + TSS region transcription start site region 93194
Hace1 10 45577829 to 45712345 134516 + protein coding gene HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1
Tssr93195 10 45577916 to 45577928 12 + TSS region transcription start site region 93195
Tssr97528 10 45578100 to 45578111 11 - TSS region transcription start site region 97528
Tssr97529 10 45578121 to 45578127 6 - TSS region transcription start site region 97529
Gm47504 10 45581219 to 45581571 352 + pseudogene predicted gene, 47504
Tssr93196 10 45633834 to 45633837 3 + TSS region transcription start site region 93196
Tssr93197 10 45634574 to 45634596 22 + TSS region transcription start site region 93197
Tssr93198 10 45634637 to 45634640 3 + TSS region transcription start site region 93198
Gm47503 10 45656955 to 45661912 4957 + unclassified gene predicted gene, 47503
Gm47502 10 45680957 to 45681525 568 + pseudogene predicted gene, 47502
Tssr93199 10 45685995 to 45685997 2 + TSS region transcription start site region 93199
Tssr93200 10 45807533 to 45807540 7 + TSS region transcription start site region 93200
Tssr93201 10 45807558 to 45807569 11 + TSS region transcription start site region 93201
D030045P18Rik 10 45807704 to 45852018 44314 + lincRNA gene RIKEN cDNA D030045P18 gene
Tssr93202 10 45807759 to 45807778 19 + TSS region transcription start site region 93202
Tssr93203 10 45807779 to 45807801 22 + TSS region transcription start site region 93203
Gm27410 10 45816747 to 45816861 114 - miRNA gene predicted gene, 27410
Tssr93204 10 45868746 to 45868762 16 + TSS region transcription start site region 93204
Cpgi1520 10 45875272 to 45875452 180 CpG island CpG island 1520
Gpx4-ps2 10 45875290 to 45876081 791 + pseudogene glutathione peroxidase 4, pseudogene 2
Tssr93205 10 45875304 to 45875309 5 + TSS region transcription start site region 93205
Tssr93206 10 46065298 to 46065301 3 + TSS region transcription start site region 93206
Gm35430 10 46228831 to 46237617 8786 + lincRNA gene predicted gene, 35430
Gm40640 10 46303684 to 46328475 24791 + lncRNA gene predicted gene, 40640
Gm25740 10 46377609 to 46377715 106 + snRNA gene predicted gene, 25740
Tssr97530 10 46505633 to 46505635 2 - TSS region transcription start site region 97530
Tssr93207 10 46526192 to 46526193 1 + TSS region transcription start site region 93207
D10Mit285 10 46569220 to 46569326 106 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 285
Tssr93208 10 46597929 to 46597939 10 + TSS region transcription start site region 93208
Gm23481 10 46658508 to 46658638 130 - snoRNA gene predicted gene, 23481
Gm19994 10 46670144 to 46670729 585 + pseudogene predicted gene, 19994