Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:44186007-45276016

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Speer5-ps1 10 44170447 to 44219585 49138 + pseudogene spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1
Tssr93163 10 44211376 to 44211380 4 + TSS region transcription start site region 93163
Gm40637 10 44267742 to 44268243 501 - lncRNA gene predicted gene, 40637
Cpgi1510 10 44267971 to 44268896 925 CpG island CpG island 1510
Tssr93164 10 44268328 to 44268379 51 + TSS region transcription start site region 93164
Atg5 10 44268358 to 44364291 95933 + protein coding gene autophagy related 5
Tssr93165 10 44268389 to 44268408 19 + TSS region transcription start site region 93165
Tssr93166 10 44268422 to 44268445 23 + TSS region transcription start site region 93166
Tssr93167 10 44268448 to 44268528 80 + TSS region transcription start site region 93167
Tssr93168 10 44270248 to 44270253 5 + TSS region transcription start site region 93168
Gm19229 10 44335782 to 44336301 519 - pseudogene predicted gene, 19229
Tssr93169 10 44358392 to 44358398 6 + TSS region transcription start site region 93169
Mir1929 10 44359676 to 44359768 92 + miRNA gene microRNA 1929
Gm35028 10 44418400 to 44424324 5924 - lincRNA gene predicted gene, 35028
Tssr97508 10 44423980 to 44423995 15 - TSS region transcription start site region 97508
Prdm1 10 44437177 to 44528501 91324 - protein coding gene PR domain containing 1, with ZNF domain
Tssr97509 10 44441223 to 44441257 34 - TSS region transcription start site region 97509
Cpgi1511 10 44457176 to 44457500 324 CpG island CpG island 1511
Cpgi1512 10 44458424 to 44459110 686 CpG island CpG island 1512
Tssr97510 10 44458569 to 44458584 15 - TSS region transcription start site region 97510
Tssr97511 10 44458668 to 44458681 13 - TSS region transcription start site region 97511
Tssr97512 10 44458687 to 44458714 27 - TSS region transcription start site region 97512
Tssr97513 10 44458715 to 44458751 36 - TSS region transcription start site region 97513
Tssr97514 10 44458769 to 44458784 15 - TSS region transcription start site region 97514
Tssr97515 10 44460960 to 44460967 7 - TSS region transcription start site region 97515
Tssr97516 10 44464195 to 44464215 20 - TSS region transcription start site region 97516
Tssr93170 10 44468839 to 44468848 9 + TSS region transcription start site region 93170
Tssr97517 10 44470709 to 44470721 12 - TSS region transcription start site region 97517
Tssr93171 10 44475987 to 44475996 9 + TSS region transcription start site region 93171
Cpgi1513 10 44527012 to 44527436 424 CpG island CpG island 1513
Cpgi1514 10 44529257 to 44529927 670 CpG island CpG island 1514
Gm48061 10 44580517 to 44590238 9721 - lincRNA gene predicted gene, 48061
Gm5950 10 44589928 to 44592573 2645 + pseudogene predicted gene 5950
Gm22087 10 44597240 to 44597327 87 - snRNA gene predicted gene, 22087
Gm48065 10 44597889 to 44602174 4285 - lincRNA gene predicted gene, 48065
Gm35154 10 44599113 to 44689114 90001 + lincRNA gene predicted gene, 35154
Tssr93172 10 44599816 to 44599868 52 + TSS region transcription start site region 93172
Tssr93173 10 44599877 to 44599906 29 + TSS region transcription start site region 93173
Tssr97518 10 44602167 to 44602193 26 - TSS region transcription start site region 97518
Tssr93174 10 44611821 to 44611841 20 + TSS region transcription start site region 93174
Tssr93175 10 44612001 to 44612012 11 + TSS region transcription start site region 93175
Tssr97519 10 44631661 to 44631686 25 - TSS region transcription start site region 97519
Gm48066 10 44647518 to 44662496 14978 + lincRNA gene predicted gene, 48066
Gm27977 10 44668384 to 44668494 110 + rRNA gene predicted gene, 27977
Tssr93176 10 44686246 to 44686250 4 + TSS region transcription start site region 93176
Gm47388 10 44697180 to 44699931 2751 + unclassified gene predicted gene, 47388
Gm47389 10 44715558 to 44717165 1607 + lincRNA gene predicted gene, 47389
D10Jcs17 10 44716771 to 44717057 286 DNA segment DNA segment, Chr 10, John C. Schimenti 17
4930431F10Rik 10 44730777 to 44738900 8123 - lincRNA gene RIKEN cDNA 4930431F10 gene
Gm47392 10 44730940 to 44823886 92946 + lincRNA gene predicted gene, 47392
Tssr93177 10 44731007 to 44731016 9 + TSS region transcription start site region 93177
Gm22503 10 44732353 to 44732467 114 + snRNA gene predicted gene, 22503
Gm18250 10 44742713 to 44743412 699 pseudogene predicted gene, 18250
Gm47398 10 44851393 to 44866786 15393 - lincRNA gene predicted gene, 47398
Tssr93178 10 44852589 to 44852590 1 + TSS region transcription start site region 93178
Gm6983 10 44852614 to 44853241 627 + pseudogene predicted gene 6983
Tssr97520 10 44866794 to 44866799 5 - TSS region transcription start site region 97520
Gm40638 10 44902617 to 44943276 40659 - lincRNA gene predicted gene, 40638
Gm24271 10 44922067 to 44922177 110 - miRNA gene predicted gene, 24271
D10Mit148 10 44999904 to 45000035 131 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 148
Gm4795 10 45006110 to 45007117 1007 + pseudogene predicted pseudogene 4795
Gm40639 10 45024302 to 45028152 3850 + lincRNA gene predicted gene, 40639
D10Mit216 10 45041557 to 45041664 107 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 216
Tssr97521 10 45048696 to 45048705 9 - TSS region transcription start site region 97521
2310075K07Rik 10 45064937 to 45067332 2395 - unclassified non-coding RNA gene RIKEN cDNA 2310075K07 gene
Cpgi1515 10 45066585 to 45067986 1401 CpG island CpG island 1515
Tssr93179 10 45067035 to 45067042 7 + TSS region transcription start site region 93179
Tssr93180 10 45067073 to 45067088 15 + TSS region transcription start site region 93180
Tssr93181 10 45067167 to 45067279 112 + TSS region transcription start site region 93181
Prep 10 45067214 to 45159981 92767 + protein coding gene prolyl endopeptidase
Tssr93182 10 45067292 to 45067303 11 + TSS region transcription start site region 93182
Gm23766 10 45095629 to 45095708 79 - miRNA gene predicted gene, 23766
C87926 10 45101199 to 45101939 740 unclassified gene cDNA sequence, C87926
Tssr93183 10 45107513 to 45107522 9 + TSS region transcription start site region 93183
Tssr93184 10 45107532 to 45107573 41 + TSS region transcription start site region 93184
Tssr93185 10 45107581 to 45107588 7 + TSS region transcription start site region 93185
Gm27723 10 45247087 to 45247149 62 + snRNA gene predicted gene, 27723
Gm26016 10 45268603 to 45268731 128 - snoRNA gene predicted gene, 26016