Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:43903392-44813398

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rtn4ip1 10 43901714 to 43947864 46150 + protein coding gene reticulon 4 interacting protein 1
Tssr93159 10 43927961 to 43927970 9 + TSS region transcription start site region 93159
Tssr93160 10 43947874 to 43947900 26 + TSS region transcription start site region 93160
Crybg1 10 43950636 to 44148853 198217 - protein coding gene crystallin beta-gamma domain containing 1
Gm40636 10 43968684 to 43985318 16634 + lncRNA gene predicted gene, 40636
Tssr97479 10 43971917 to 43971928 11 - TSS region transcription start site region 97479
Tssr97480 10 43971959 to 43971970 11 - TSS region transcription start site region 97480
Tssr97481 10 43972013 to 43972036 23 - TSS region transcription start site region 97481
Tssr97482 10 43980280 to 43980313 33 - TSS region transcription start site region 97482
Tssr97483 10 43996337 to 43996362 25 - TSS region transcription start site region 97483
Tssr97484 10 43997315 to 43997320 5 - TSS region transcription start site region 97484
Tssr97485 10 43997343 to 43997361 18 - TSS region transcription start site region 97485
Tssr97486 10 43997364 to 43997375 11 - TSS region transcription start site region 97486
Tssr97487 10 43997379 to 43997390 11 - TSS region transcription start site region 97487
Tssr97488 10 43997427 to 43997442 15 - TSS region transcription start site region 97488
Wght8 10 44000000 to 5000000 -39000000 QTL weight 8
Cpgi1507 10 44003378 to 44004721 1343 CpG island CpG island 1507
Tssr97489 10 44003576 to 44003587 11 - TSS region transcription start site region 97489
Tssr97490 10 44003590 to 44003644 54 - TSS region transcription start site region 97490
Tssr97491 10 44003813 to 44003818 5 - TSS region transcription start site region 97491
Tssr97492 10 44003832 to 44003898 66 - TSS region transcription start site region 97492
Gm10812 10 44004154 to 44004701 547 + pseudogene predicted gene 10812
Tssr97493 10 44004311 to 44004325 14 - TSS region transcription start site region 97493
Tssr97494 10 44004357 to 44004385 28 - TSS region transcription start site region 97494
Tssr97495 10 44004429 to 44004443 14 - TSS region transcription start site region 97495
Tssr97496 10 44004462 to 44004479 17 - TSS region transcription start site region 97496
Tssr97497 10 44004498 to 44004510 12 - TSS region transcription start site region 97497
Cpgi1508 10 44005677 to 44006119 442 CpG island CpG island 1508
Tssr93161 10 44016142 to 44016148 6 + TSS region transcription start site region 93161
Tssr97498 10 44022268 to 44022280 12 - TSS region transcription start site region 97498
Tssr97499 10 44022282 to 44022291 9 - TSS region transcription start site region 97499
Tssr3189 10 44058861 to 44058883 22 - TSS region transcription start site region 3189
Tssr97500 10 44058910 to 44058922 12 - TSS region transcription start site region 97500
D10Jpk3 10 44077431 to 44077562 131 DNA segment DNA segment, Chr 10, Japan, Kominami 3
Tssr97501 10 44099353 to 44099358 5 - TSS region transcription start site region 97501
repro3 10 44145937 to 46844387 2698450 heritable phenotypic marker reproductive mutation 3, JAX Reproductive Mutagenesis Program
D10Mit38 10 44145937 to 44146085 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 38
Cpgi1509 10 44148457 to 44149246 789 CpG island CpG island 1509
Tssr97502 10 44148787 to 44148804 17 - TSS region transcription start site region 97502
Tssr97503 10 44148816 to 44148834 18 - TSS region transcription start site region 97503
Tssr97504 10 44148847 to 44148858 11 - TSS region transcription start site region 97504
Tssr97505 10 44148941 to 44148950 9 - TSS region transcription start site region 97505
Tssr97506 10 44148962 to 44148969 7 - TSS region transcription start site region 97506
Gm5949 10 44153470 to 44154890 1420 + pseudogene predicted gene 5949
Gm18669 10 44169577 to 44170354 777 - pseudogene predicted gene, 18669
Tssr97507 10 44170303 to 44170351 48 - TSS region transcription start site region 97507
Tssr93162 10 44170442 to 44170467 25 + TSS region transcription start site region 93162
Speer5-ps1 10 44170447 to 44219585 49138 + pseudogene spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1
Tssr93163 10 44211376 to 44211380 4 + TSS region transcription start site region 93163
Gm40637 10 44267742 to 44268243 501 - lncRNA gene predicted gene, 40637
Cpgi1510 10 44267971 to 44268896 925 CpG island CpG island 1510
Tssr93164 10 44268328 to 44268379 51 + TSS region transcription start site region 93164
Atg5 10 44268358 to 44364291 95933 + protein coding gene autophagy related 5
Tssr93165 10 44268389 to 44268408 19 + TSS region transcription start site region 93165
Tssr93166 10 44268422 to 44268445 23 + TSS region transcription start site region 93166
Tssr93167 10 44268448 to 44268528 80 + TSS region transcription start site region 93167
Tssr93168 10 44270248 to 44270253 5 + TSS region transcription start site region 93168
Gm19229 10 44335782 to 44336301 519 - pseudogene predicted gene, 19229
Tssr93169 10 44358392 to 44358398 6 + TSS region transcription start site region 93169
Mir1929 10 44359676 to 44359768 92 + miRNA gene microRNA 1929
Gm35028 10 44418400 to 44424324 5924 - lincRNA gene predicted gene, 35028
Tssr97508 10 44423980 to 44423995 15 - TSS region transcription start site region 97508
Prdm1 10 44437177 to 44528501 91324 - protein coding gene PR domain containing 1, with ZNF domain
Tssr97509 10 44441223 to 44441257 34 - TSS region transcription start site region 97509
Cpgi1511 10 44457176 to 44457500 324 CpG island CpG island 1511
Cpgi1512 10 44458424 to 44459110 686 CpG island CpG island 1512
Tssr97510 10 44458569 to 44458584 15 - TSS region transcription start site region 97510
Tssr97511 10 44458668 to 44458681 13 - TSS region transcription start site region 97511
Tssr97512 10 44458687 to 44458714 27 - TSS region transcription start site region 97512
Tssr97513 10 44458715 to 44458751 36 - TSS region transcription start site region 97513
Tssr97514 10 44458769 to 44458784 15 - TSS region transcription start site region 97514
Tssr97515 10 44460960 to 44460967 7 - TSS region transcription start site region 97515
Tssr97516 10 44464195 to 44464215 20 - TSS region transcription start site region 97516
Tssr93170 10 44468839 to 44468848 9 + TSS region transcription start site region 93170
Tssr97517 10 44470709 to 44470721 12 - TSS region transcription start site region 97517
Tssr93171 10 44475987 to 44475996 9 + TSS region transcription start site region 93171
Cpgi1513 10 44527012 to 44527436 424 CpG island CpG island 1513
Cpgi1514 10 44529257 to 44529927 670 CpG island CpG island 1514
Gm48061 10 44580517 to 44590238 9721 - lincRNA gene predicted gene, 48061
Gm5950 10 44589928 to 44592573 2645 + pseudogene predicted gene 5950
Gm22087 10 44597240 to 44597327 87 - snRNA gene predicted gene, 22087
Gm48065 10 44597889 to 44602174 4285 - lincRNA gene predicted gene, 48065
Gm35154 10 44599113 to 44689114 90001 + lincRNA gene predicted gene, 35154
Tssr93172 10 44599816 to 44599868 52 + TSS region transcription start site region 93172
Tssr93173 10 44599877 to 44599906 29 + TSS region transcription start site region 93173
Tssr97518 10 44602167 to 44602193 26 - TSS region transcription start site region 97518
Tssr93174 10 44611821 to 44611841 20 + TSS region transcription start site region 93174
Tssr93175 10 44612001 to 44612012 11 + TSS region transcription start site region 93175
Tssr97519 10 44631661 to 44631686 25 - TSS region transcription start site region 97519
Gm48066 10 44647518 to 44662496 14978 + lincRNA gene predicted gene, 48066
Gm27977 10 44668384 to 44668494 110 + rRNA gene predicted gene, 27977
Tssr93176 10 44686246 to 44686250 4 + TSS region transcription start site region 93176
Gm47388 10 44697180 to 44699931 2751 + unclassified gene predicted gene, 47388
Gm47389 10 44715558 to 44717165 1607 + lincRNA gene predicted gene, 47389
D10Jcs17 10 44716771 to 44717057 286 DNA segment DNA segment, Chr 10, John C. Schimenti 17
4930431F10Rik 10 44730777 to 44738900 8123 - lincRNA gene RIKEN cDNA 4930431F10 gene
Gm47392 10 44730940 to 44823886 92946 + lincRNA gene predicted gene, 47392
Tssr93177 10 44731007 to 44731016 9 + TSS region transcription start site region 93177
Gm22503 10 44732353 to 44732467 114 + snRNA gene predicted gene, 22503
Gm18250 10 44742713 to 44743412 699 pseudogene predicted gene, 18250