Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:4355112-6745964

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Akap12 10 4266380 to 4359470 93090 + protein coding gene A kinase (PRKA) anchor protein (gravin) 12
Tssr92253 10 4355435 to 4355470 35 + TSS region transcription start site region 92253
Tssr92254 10 4355680 to 4355685 5 + TSS region transcription start site region 92254
Tssr3116 10 4358628 to 4358646 18 + TSS region transcription start site region 3116
Zbtb2 10 4367075 to 4388108 21033 - protein coding gene zinc finger and BTB domain containing 2
Cpgi1265 10 4386538 to 4388821 2283 CpG island CpG island 1265
Tssr96505 10 4386986 to 4386995 9 - TSS region transcription start site region 96505
Tssr92255 10 4387126 to 4387175 49 + TSS region transcription start site region 92255
Tssr92256 10 4387181 to 4387205 24 + TSS region transcription start site region 92256
Tssr96506 10 4387436 to 4387479 43 - TSS region transcription start site region 96506
Tssr92257 10 4387507 to 4387551 44 + TSS region transcription start site region 92257
Tssr96507 10 4387972 to 4388002 30 - TSS region transcription start site region 96507
Tssr96508 10 4388037 to 4388063 26 - TSS region transcription start site region 96508
Gm21781 10 4391587 to 4396424 4837 + lincRNA gene predicted gene, 21781
Rmnd1 10 4403168 to 4432404 29236 - protein coding gene required for meiotic nuclear division 1 homolog
Gm16153 10 4409033 to 4423369 14336 + unclassified non-coding RNA gene predicted gene 16153
Tssr96509 10 4409860 to 4409906 46 - TSS region transcription start site region 96509
Tssr96510 10 4409957 to 4409992 35 - TSS region transcription start site region 96510
9430013L17Rik 10 4424526 to 4425697 1171 unclassified gene RIKEN cDNA 9430013L17 gene
Tssr96511 10 4429159 to 4429191 32 - TSS region transcription start site region 96511
Tssr92258 10 4429265 to 4429279 14 + TSS region transcription start site region 92258
Tssr92259 10 4429287 to 4429302 15 + TSS region transcription start site region 92259
Cpgi1264 10 4431940 to 4433247 1307 CpG island CpG island 1264
Tssr96512 10 4432256 to 4432269 13 - TSS region transcription start site region 96512
Tssr96513 10 4432285 to 4432302 17 - TSS region transcription start site region 96513
Tssr96514 10 4432312 to 4432341 29 - TSS region transcription start site region 96514
Armt1 10 4432467 to 4455141 22674 + protein coding gene acidic residue methyltransferase 1
Tssr92260 10 4432586 to 4432661 75 + TSS region transcription start site region 92260
Tssr92261 10 4482502 to 4482520 18 + TSS region transcription start site region 92261
Ccdc170 10 4482502 to 4562231 79729 + protein coding gene coiled-coil domain containing 170
Gm22739 10 4484234 to 4484393 159 + snRNA gene predicted gene, 22739
Tssr96515 10 4568210 to 4568215 5 - TSS region transcription start site region 96515
Gm3266 10 4569633 to 4570223 590 - pseudogene predicted gene 3266
Tssr92262 10 4605830 to 4605875 45 + TSS region transcription start site region 92262
Tssr92263 10 4611620 to 4611633 13 + TSS region transcription start site region 92263
Tssr92264 10 4611813 to 4611823 10 + TSS region transcription start site region 92264
Tssr92265 10 4611838 to 4611863 25 + TSS region transcription start site region 92265
Tssr92266 10 4611870 to 4611880 10 + TSS region transcription start site region 92266
Tssr92267 10 4611945 to 4611958 13 + TSS region transcription start site region 92267
Tssr92268 10 4611971 to 4612015 44 + TSS region transcription start site region 92268
Esr1 10 4611989 to 5005633 393644 + protein coding gene estrogen receptor 1 (alpha)
Tssr92269 10 4612051 to 4612067 16 + TSS region transcription start site region 92269
Tssr92270 10 4709815 to 4709862 47 + TSS region transcription start site region 92270
Cpgi1263 10 4709999 to 4710306 307 CpG island CpG island 1263
Tssr92271 10 4710119 to 4710166 47 + TSS region transcription start site region 92271
Tssr92272 10 4710167 to 4710186 19 + TSS region transcription start site region 92272
Tssr92273 10 4710193 to 4710204 11 + TSS region transcription start site region 92273
Tssr92274 10 4711674 to 4711685 11 + TSS region transcription start site region 92274
Cpgi1262 10 4712030 to 4713084 1054 CpG island CpG island 1262
Tssr92275 10 4819487 to 4819491 4 + TSS region transcription start site region 92275
Tssr92276 10 4862315 to 4862319 4 + TSS region transcription start site region 92276
Tssr92277 10 4863445 to 4863457 12 + TSS region transcription start site region 92277
Tssr92278 10 4959586 to 4959591 5 + TSS region transcription start site region 92278
Tssr92279 10 4981518 to 4981534 16 + TSS region transcription start site region 92279
Tssr92280 10 5003430 to 5003435 5 + TSS region transcription start site region 92280
Syne1 10 5020192 to 5550692 530500 - protein coding gene spectrin repeat containing, nuclear envelope 1
5330421C15Rik 10 5023496 to 5029002 5506 unclassified gene RIKEN cDNA 5330421C15 gene
Tssr3117 10 5032271 to 5032276 5 + TSS region transcription start site region 3117
Gm25694 10 5036175 to 5036456 281 - ribozyme gene predicted gene, 25694
Tssr96516 10 5068914 to 5068958 44 - TSS region transcription start site region 96516
Tssr96517 10 5069044 to 5069079 35 - TSS region transcription start site region 96517
Gm10097 10 5069192 to 5071975 2783 + protein coding gene predicted gene 10097
Gm48836 10 5091006 to 5091286 280 - pseudogene predicted gene, 48836
Tssr3118 10 5149015 to 5149019 4 + TSS region transcription start site region 3118
Tssr92281 10 5185279 to 5185282 3 + TSS region transcription start site region 92281
Tssr96518 10 5185526 to 5185546 20 - TSS region transcription start site region 96518
Tssr96519 10 5185549 to 5185578 29 - TSS region transcription start site region 96519
Cpgi1261 10 5194446 to 5194850 404 CpG island CpG island 1261
Tssr96520 10 5194700 to 5194763 63 - TSS region transcription start site region 96520
Tssr96521 10 5194783 to 5194812 29 - TSS region transcription start site region 96521
Tssr96522 10 5194859 to 5194871 12 - TSS region transcription start site region 96522
Tssr96523 10 5195036 to 5195054 18 - TSS region transcription start site region 96523
Tssr96524 10 5289377 to 5289391 14 - TSS region transcription start site region 96524
Tssr96525 10 5289397 to 5289436 39 - TSS region transcription start site region 96525
Tssr96526 10 5289456 to 5289467 11 - TSS region transcription start site region 96526
Tssr96527 10 5299012 to 5299026 14 - TSS region transcription start site region 96527
Tssr96528 10 5309404 to 5309451 47 - TSS region transcription start site region 96528
Tssr3119 10 5310006 to 5310009 3 + TSS region transcription start site region 3119
Tssr96529 10 5312530 to 5312571 41 - TSS region transcription start site region 96529
Tssr96530 10 5338883 to 5338897 14 - TSS region transcription start site region 96530
Gm23573 10 5357173 to 5357279 106 + snRNA gene predicted gene, 23573
Tssr96531 10 5367636 to 5367659 23 - TSS region transcription start site region 96531
Tssr96532 10 5367688 to 5367700 12 - TSS region transcription start site region 96532
Tssr96533 10 5367706 to 5367723 17 - TSS region transcription start site region 96533
Tssr96534 10 5367724 to 5367770 46 - TSS region transcription start site region 96534
Tssr3120 10 5367835 to 5367868 33 - TSS region transcription start site region 3120
Tssr96535 10 5368273 to 5368287 14 - TSS region transcription start site region 96535
Tssr96536 10 5368373 to 5368399 26 - TSS region transcription start site region 96536
Tssr96537 10 5368450 to 5368462 12 - TSS region transcription start site region 96537
Tssr96538 10 5368485 to 5368497 12 - TSS region transcription start site region 96538
Tssr96539 10 5368505 to 5368527 22 - TSS region transcription start site region 96539
Tssr96540 10 5424331 to 5424356 25 - TSS region transcription start site region 96540
Tssr96541 10 5424372 to 5424382 10 - TSS region transcription start site region 96541
Gm40594 10 5468718 to 5472634 3916 + lncRNA gene predicted gene, 40594
Tssr96542 10 5488188 to 5488195 7 - TSS region transcription start site region 96542
Tssr96543 10 5488200 to 5488237 37 - TSS region transcription start site region 96543
Tssr96544 10 5488243 to 5488255 12 - TSS region transcription start site region 96544
Tssr96545 10 5488267 to 5488289 22 - TSS region transcription start site region 96545
Tssr96546 10 5514120 to 5514124 4 - TSS region transcription start site region 96546
Tssr96547 10 5548684 to 5548723 39 - TSS region transcription start site region 96547
Tssr92282 10 5548716 to 5548718 2 + TSS region transcription start site region 92282
Tssr92283 10 5548799 to 5548833 34 + TSS region transcription start site region 92283
Cpgi1260 10 5550112 to 5550964 852 CpG island CpG island 1260
Tssr96548 10 5550128 to 5550138 10 - TSS region transcription start site region 96548
Tssr96549 10 5550141 to 5550163 22 - TSS region transcription start site region 96549
Tssr96550 10 5550549 to 5550562 13 - TSS region transcription start site region 96550
Tssr96551 10 5550565 to 5550598 33 - TSS region transcription start site region 96551
Tssr96552 10 5550599 to 5550613 14 - TSS region transcription start site region 96552
Tssr96553 10 5550615 to 5550631 16 - TSS region transcription start site region 96553
Tssr96554 10 5550636 to 5550706 70 - TSS region transcription start site region 96554
Tssr96555 10 5550708 to 5550735 27 - TSS region transcription start site region 96555
Tssr96556 10 5550798 to 5550807 9 - TSS region transcription start site region 96556
Tssr96557 10 5550809 to 5550835 26 - TSS region transcription start site region 96557
Tssr3121 10 5550851 to 5550868 17 - TSS region transcription start site region 3121
Tssr164703 10 5557246 to 5557247 1 - TSS region transcription start site region 164703
Tssr96558 10 5593517 to 5593524 7 - TSS region transcription start site region 96558
Tssr3122 10 5593541 to 5593550 9 - TSS region transcription start site region 3122
Tssr92284 10 5593718 to 5593739 21 + TSS region transcription start site region 92284
Myct1 10 5593728 to 5606789 13061 + protein coding gene myc target 1
Tssr92285 10 5593764 to 5593809 45 + TSS region transcription start site region 92285
Tssr92286 10 5593810 to 5593821 11 + TSS region transcription start site region 92286
Tssr92287 10 5593823 to 5593855 32 + TSS region transcription start site region 92287
Tssr92288 10 5594772 to 5594775 3 + TSS region transcription start site region 92288
Tssr92289 10 5639210 to 5639225 15 + TSS region transcription start site region 92289
Vip 10 5639218 to 5647617 8399 + protein coding gene vasoactive intestinal polypeptide
Tssr92290 10 5664195 to 5664198 3 + TSS region transcription start site region 92290
Tssr96559 10 5712002 to 5712009 7 - TSS region transcription start site region 96559
Gm40595 10 5721485 to 5724198 2713 + protein coding gene predicted gene, 40595
Gm47679 10 5735819 to 5736938 1119 + pseudogene predicted gene, 47679
Gm30617 10 5784832 to 5791511 6679 - lncRNA gene predicted gene, 30617
Fbxo5 10 5799158 to 5805465 6307 - protein coding gene F-box protein 5
Tssr96560 10 5804598 to 5804623 25 - TSS region transcription start site region 96560
Cpgi1259 10 5804673 to 5806230 1557 CpG island CpG island 1259
Tssr96561 10 5805353 to 5805364 11 - TSS region transcription start site region 96561
Tssr96562 10 5805394 to 5805408 14 - TSS region transcription start site region 96562
Tssr96563 10 5805412 to 5805454 42 - TSS region transcription start site region 96563
D10Mit1009 10 5807258 to 5807352 94 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1009
Mtrf1l 10 5811887 to 5823910 12023 - protein coding gene mitochondrial translational release factor 1-like
Cpgi1258 10 5823344 to 5824493 1149 CpG island CpG island 1258
Tssr96564 10 5823819 to 5823873 54 - TSS region transcription start site region 96564
Tssr96565 10 5823880 to 5823937 57 - TSS region transcription start site region 96565
Rgs17 10 5825663 to 5922400 96737 - protein coding gene regulator of G-protein signaling 17
Tssr96566 10 5828020 to 5828034 14 - TSS region transcription start site region 96566
Tssr96567 10 5828097 to 5828108 11 - TSS region transcription start site region 96567
Gm18902 10 5848464 to 5849565 1101 - pseudogene predicted gene, 18902
Cpgi1257 10 5921375 to 5922806 1431 CpG island CpG island 1257
Tssr96568 10 5922325 to 5922328 3 - TSS region transcription start site region 96568
Tssr96569 10 5922341 to 5922384 43 - TSS region transcription start site region 96569
Tssr96570 10 5922385 to 5922407 22 - TSS region transcription start site region 96570
Cpgi1256 10 6035834 to 6036134 300 CpG island CpG island 1256
D10Mit49 10 6201945 to 6202049 104 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 49
Gm3213 10 6367676 to 6368484 808 + protein coding gene predicted gene 3213
Gm46187 10 6401565 to 6404977 3412 + pseudogene predicted gene, 46187
Gm47755 10 6422698 to 6422884 186 + pseudogene predicted gene, 47755
Gm4921 10 6525883 to 6526874 991 - pseudogene predicted gene 4921
Gm10945 10 6740629 to 6761761 21132 - protein coding gene predicted gene 10945
Wght8 10 44000000 to 5000000 -39000000 QTL weight 8
Ath11 10 58857699 to 6201945 -52655754 QTL atherosclerosis 11