Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:43039344-43919354

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sobp 10 43002500 to 43174530 172030 - protein coding gene sine oculis binding protein
Gm47815 10 43034993 to 43050219 15226 + antisense lncRNA gene predicted gene, 47815
Tssr97460 10 43108854 to 43108858 4 - TSS region transcription start site region 97460
Gm29245 10 43154216 to 43155631 1415 + antisense lncRNA gene predicted gene 29245
Cpgi1498 10 43173072 to 43175664 2592 CpG island CpG island 1498
Gm29246 10 43173263 to 43173958 695 + antisense lncRNA gene predicted gene 29246
Tssr97461 10 43174453 to 43174476 23 - TSS region transcription start site region 97461
Tssr97462 10 43174496 to 43174516 20 - TSS region transcription start site region 97462
Tssr97463 10 43174521 to 43174569 48 - TSS region transcription start site region 97463
Tssr97464 10 43174577 to 43174580 3 - TSS region transcription start site region 97464
Tssr97465 10 43174589 to 43174615 26 - TSS region transcription start site region 97465
9030612E09Rik 10 43174704 to 43176562 1858 + unclassified gene RIKEN cDNA 9030612E09 gene
5430427G11Rik 10 43220218 to 43221381 1163 unclassified gene RIKEN cDNA 5430427G11 gene
Cpgi1499 10 43221011 to 43222112 1101 CpG island CpG island 1499
Tssr97466 10 43221311 to 43221333 22 - TSS region transcription start site region 97466
Tssr97467 10 43221356 to 43221369 13 - TSS region transcription start site region 97467
Tssr97468 10 43221372 to 43221388 16 - TSS region transcription start site region 97468
Tssr93128 10 43221466 to 43221501 35 + TSS region transcription start site region 93128
Pdss2 10 43221486 to 43464882 243396 + protein coding gene prenyl (solanesyl) diphosphate synthase, subunit 2
Tssr93129 10 43221505 to 43221529 24 + TSS region transcription start site region 93129
Tssr93130 10 43319308 to 43319314 6 + TSS region transcription start site region 93130
Gm16546 10 43319360 to 43319714 354 + pseudogene predicted gene 16546
Gm40631 10 43320306 to 43344041 23735 - lncRNA gene predicted gene, 40631
Gm47857 10 43363010 to 43366888 3878 + unclassified gene predicted gene, 47857
Rps19-ps11 10 43373488 to 43373920 432 - pseudogene ribosomal protein S19, pseudogene 11
Tssr97469 10 43373949 to 43373954 5 - TSS region transcription start site region 97469
Gm47856 10 43412531 to 43413762 1231 + unclassified gene predicted gene, 47856
Tssr3188 10 43438473 to 43438474 1 + TSS region transcription start site region 3188
Gm3699 10 43456427 to 43456501 74 - pseudogene predicted gene 3699
Tssr97470 10 43456540 to 43456549 9 - TSS region transcription start site region 97470
Cpgi1500 10 43478355 to 43480142 1787 CpG island CpG island 1500
Tssr93131 10 43478622 to 43478651 29 + TSS region transcription start site region 93131
Tssr93132 10 43478812 to 43478863 51 + TSS region transcription start site region 93132
Bend3 10 43479140 to 43515417 36277 + protein coding gene BEN domain containing 3
Tssr93133 10 43479141 to 43479194 53 + TSS region transcription start site region 93133
Tssr93134 10 43479201 to 43479249 48 + TSS region transcription start site region 93134
Tssr93135 10 43479282 to 43479329 47 + TSS region transcription start site region 93135
Tssr93136 10 43479344 to 43479354 10 + TSS region transcription start site region 93136
Cpgi1501 10 43511230 to 43511799 569 CpG island CpG island 1501
Tssr93137 10 43518566 to 43518581 15 + TSS region transcription start site region 93137
Gm47889 10 43518571 to 43555817 37246 + lincRNA gene predicted gene, 47889
Tssr93138 10 43518586 to 43518600 14 + TSS region transcription start site region 93138
Tssr93139 10 43524080 to 43524093 13 + TSS region transcription start site region 93139
Gm9803 10 43524084 to 43524617 533 + pseudogene predicted gene 9803
Tssr93140 10 43524134 to 43524158 24 + TSS region transcription start site region 93140
1700021F05Rik 10 43525133 to 43540994 15861 - protein coding gene RIKEN cDNA 1700021F05 gene
Tssr97471 10 43530832 to 43530863 31 - TSS region transcription start site region 97471
Tssr97472 10 43533164 to 43533169 5 - TSS region transcription start site region 97472
Cpgi1502 10 43540331 to 43541234 903 CpG island CpG island 1502
Tssr97473 10 43540945 to 43541024 79 - TSS region transcription start site region 97473
Cpgi1503 10 43578313 to 43580139 1826 CpG island CpG island 1503
Tssr93141 10 43579161 to 43579178 17 + TSS region transcription start site region 93141
Cd24a 10 43579169 to 43584265 5096 + protein coding gene CD24a antigen
Tssr93142 10 43579923 to 43579945 22 + TSS region transcription start site region 93142
Cpgi1504 10 43580798 to 43581030 232 CpG island CpG island 1504
D10Mit107 10 43581643 to 43581744 101 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 107
Tssr93143 10 43582689 to 43582731 42 + TSS region transcription start site region 93143
Tssr93144 10 43583896 to 43583900 4 + TSS region transcription start site region 93144
Tssr93145 10 43593392 to 43593403 11 + TSS region transcription start site region 93145
Tssr93146 10 43593417 to 43593446 29 + TSS region transcription start site region 93146
F930017D23Rik 10 43593427 to 43630914 37487 + lincRNA gene RIKEN cDNA F930017D23 gene
Tssr93147 10 43603382 to 43603387 5 + TSS region transcription start site region 93147
Tssr93148 10 43610468 to 43610477 9 + TSS region transcription start site region 93148
Tssr93149 10 43610509 to 43610518 9 + TSS region transcription start site region 93149
Rpl26-ps1 10 43639223 to 43639648 425 + pseudogene ribosomal protein L26, pseudogene 1
D10Mit215 10 43645003 to 43645126 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 215
fsq 10 43656132 to 53772211 10116079 heritable phenotypic marker flying squirrel
D10Mit54 10 43656132 to 43656235 103 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 54
Tssr97474 10 43656329 to 43656332 3 - TSS region transcription start site region 97474
Tssr93150 10 43656470 to 43656476 6 + TSS region transcription start site region 93150
Gm34481 10 43658852 to 43662397 3545 + lincRNA gene predicted gene, 34481
Gm40632 10 43675768 to 43682850 7082 + lncRNA gene predicted gene, 40632
Gm47927 10 43681001 to 43687302 6301 - lincRNA gene predicted gene, 47927
Gm47926 10 43690726 to 43691828 1102 - lincRNA gene predicted gene, 47926
Tssr93151 10 43695450 to 43695469 19 + TSS region transcription start site region 93151
Tssr93152 10 43719632 to 43719634 2 + TSS region transcription start site region 93152
Cpgi1505 10 43723518 to 43723770 252 CpG island CpG island 1505
Gm40634 10 43741309 to 43743064 1755 - lincRNA gene predicted gene, 40634
1700027J07Rik 10 43746158 to 43765836 19678 + lincRNA gene RIKEN cDNA 1700027J07 gene
Tssr93153 10 43746540 to 43746556 16 + TSS region transcription start site region 93153
D10Mit55 10 43783590 to 43783690 100 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 55
Gm40635 10 43792585 to 43801108 8523 - lncRNA gene predicted gene, 40635
Gm9034 10 43821231 to 43822235 1004 + pseudogene predicted pseudogene 9034
Tssr93154 10 43825887 to 43825918 31 + TSS region transcription start site region 93154
4933404K13Rik 10 43825907 to 43833301 7394 + lincRNA gene RIKEN cDNA 4933404K13 gene
Tssr93155 10 43828786 to 43828790 4 + TSS region transcription start site region 93155
Tssr97475 10 43829194 to 43829197 3 - TSS region transcription start site region 97475
Tssr97476 10 43829200 to 43829215 15 - TSS region transcription start site region 97476
Qrsl1 10 43874188 to 43901739 27551 - protein coding gene glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
Cpgi1506 10 43901292 to 43901932 640 CpG island CpG island 1506
Tssr97477 10 43901670 to 43901702 32 - TSS region transcription start site region 97477
Tssr97478 10 43901712 to 43901752 40 - TSS region transcription start site region 97478
Rtn4ip1 10 43901714 to 43947864 46150 + protein coding gene reticulon 4 interacting protein 1
Tssr93156 10 43901782 to 43901845 63 + TSS region transcription start site region 93156
Tssr93157 10 43901855 to 43901867 12 + TSS region transcription start site region 93157
Tssr93158 10 43902231 to 43902237 6 + TSS region transcription start site region 93158