Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:42938786-44718790

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scml4 10 42860370 to 42960780 100410 + protein coding gene Scm polycomb group protein like 4
Tssr93126 10 42940412 to 42940444 32 + TSS region transcription start site region 93126
Tssr93127 10 42940454 to 42940484 30 + TSS region transcription start site region 93127
Gm5079 10 42975770 to 42986086 10316 - lncRNA gene predicted gene 5079
Tssr97458 10 42999148 to 42999161 13 - TSS region transcription start site region 97458
Sobp 10 43002500 to 43174530 172030 - protein coding gene sine oculis binding protein
Tssr97459 10 43002691 to 43002715 24 - TSS region transcription start site region 97459
Cpgi1497 10 43020842 to 43022670 1828 CpG island CpG island 1497
Gm47815 10 43034993 to 43050219 15226 + antisense lncRNA gene predicted gene, 47815
Tssr97460 10 43108854 to 43108858 4 - TSS region transcription start site region 97460
Gm29245 10 43154216 to 43155631 1415 + antisense lncRNA gene predicted gene 29245
Cpgi1498 10 43173072 to 43175664 2592 CpG island CpG island 1498
Gm29246 10 43173263 to 43173958 695 + antisense lncRNA gene predicted gene 29246
Tssr97461 10 43174453 to 43174476 23 - TSS region transcription start site region 97461
Tssr97462 10 43174496 to 43174516 20 - TSS region transcription start site region 97462
Tssr97463 10 43174521 to 43174569 48 - TSS region transcription start site region 97463
Tssr97464 10 43174577 to 43174580 3 - TSS region transcription start site region 97464
Tssr97465 10 43174589 to 43174615 26 - TSS region transcription start site region 97465
9030612E09Rik 10 43174704 to 43176562 1858 + unclassified gene RIKEN cDNA 9030612E09 gene
5430427G11Rik 10 43220218 to 43221381 1163 unclassified gene RIKEN cDNA 5430427G11 gene
Cpgi1499 10 43221011 to 43222112 1101 CpG island CpG island 1499
Tssr97466 10 43221311 to 43221333 22 - TSS region transcription start site region 97466
Tssr97467 10 43221356 to 43221369 13 - TSS region transcription start site region 97467
Tssr97468 10 43221372 to 43221388 16 - TSS region transcription start site region 97468
Tssr93128 10 43221466 to 43221501 35 + TSS region transcription start site region 93128
Pdss2 10 43221486 to 43464882 243396 + protein coding gene prenyl (solanesyl) diphosphate synthase, subunit 2
Tssr93129 10 43221505 to 43221529 24 + TSS region transcription start site region 93129
Tssr93130 10 43319308 to 43319314 6 + TSS region transcription start site region 93130
Gm16546 10 43319360 to 43319714 354 + pseudogene predicted gene 16546
Gm40631 10 43320306 to 43344041 23735 - lncRNA gene predicted gene, 40631
Gm47857 10 43363010 to 43366888 3878 + unclassified gene predicted gene, 47857
Rps19-ps11 10 43373488 to 43373920 432 - pseudogene ribosomal protein S19, pseudogene 11
Tssr97469 10 43373949 to 43373954 5 - TSS region transcription start site region 97469
Gm47856 10 43412531 to 43413762 1231 + unclassified gene predicted gene, 47856
Tssr3188 10 43438473 to 43438474 1 + TSS region transcription start site region 3188
Gm3699 10 43456427 to 43456501 74 - pseudogene predicted gene 3699
Tssr97470 10 43456540 to 43456549 9 - TSS region transcription start site region 97470
Cpgi1500 10 43478355 to 43480142 1787 CpG island CpG island 1500
Tssr93131 10 43478622 to 43478651 29 + TSS region transcription start site region 93131
Tssr93132 10 43478812 to 43478863 51 + TSS region transcription start site region 93132
Bend3 10 43479140 to 43515417 36277 + protein coding gene BEN domain containing 3
Tssr93133 10 43479141 to 43479194 53 + TSS region transcription start site region 93133
Tssr93134 10 43479201 to 43479249 48 + TSS region transcription start site region 93134
Tssr93135 10 43479282 to 43479329 47 + TSS region transcription start site region 93135
Tssr93136 10 43479344 to 43479354 10 + TSS region transcription start site region 93136
Cpgi1501 10 43511230 to 43511799 569 CpG island CpG island 1501
Tssr93137 10 43518566 to 43518581 15 + TSS region transcription start site region 93137
Gm47889 10 43518571 to 43555817 37246 + lincRNA gene predicted gene, 47889
Tssr93138 10 43518586 to 43518600 14 + TSS region transcription start site region 93138
Tssr93139 10 43524080 to 43524093 13 + TSS region transcription start site region 93139
Gm9803 10 43524084 to 43524617 533 + pseudogene predicted gene 9803
Tssr93140 10 43524134 to 43524158 24 + TSS region transcription start site region 93140
1700021F05Rik 10 43525133 to 43540994 15861 - protein coding gene RIKEN cDNA 1700021F05 gene
Tssr97471 10 43530832 to 43530863 31 - TSS region transcription start site region 97471
Tssr97472 10 43533164 to 43533169 5 - TSS region transcription start site region 97472
Cpgi1502 10 43540331 to 43541234 903 CpG island CpG island 1502
Tssr97473 10 43540945 to 43541024 79 - TSS region transcription start site region 97473
Cpgi1503 10 43578313 to 43580139 1826 CpG island CpG island 1503
Tssr93141 10 43579161 to 43579178 17 + TSS region transcription start site region 93141
Cd24a 10 43579169 to 43584265 5096 + protein coding gene CD24a antigen
Tssr93142 10 43579923 to 43579945 22 + TSS region transcription start site region 93142
Cpgi1504 10 43580798 to 43581030 232 CpG island CpG island 1504
D10Mit107 10 43581643 to 43581744 101 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 107
Tssr93143 10 43582689 to 43582731 42 + TSS region transcription start site region 93143
Tssr93144 10 43583896 to 43583900 4 + TSS region transcription start site region 93144
Tssr93145 10 43593392 to 43593403 11 + TSS region transcription start site region 93145
Tssr93146 10 43593417 to 43593446 29 + TSS region transcription start site region 93146
F930017D23Rik 10 43593427 to 43630914 37487 + lincRNA gene RIKEN cDNA F930017D23 gene
Tssr93147 10 43603382 to 43603387 5 + TSS region transcription start site region 93147
Tssr93148 10 43610468 to 43610477 9 + TSS region transcription start site region 93148
Tssr93149 10 43610509 to 43610518 9 + TSS region transcription start site region 93149
Rpl26-ps1 10 43639223 to 43639648 425 + pseudogene ribosomal protein L26, pseudogene 1
D10Mit215 10 43645003 to 43645126 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 215
D10Mit54 10 43656132 to 43656235 103 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 54
fsq 10 43656132 to 53772211 10116079 heritable phenotypic marker flying squirrel
Tssr97474 10 43656329 to 43656332 3 - TSS region transcription start site region 97474
Tssr93150 10 43656470 to 43656476 6 + TSS region transcription start site region 93150
Gm34481 10 43658852 to 43662397 3545 + lincRNA gene predicted gene, 34481
Gm40632 10 43675768 to 43682850 7082 + lncRNA gene predicted gene, 40632
Gm47927 10 43681001 to 43687302 6301 - lincRNA gene predicted gene, 47927
Gm47926 10 43690726 to 43691828 1102 - lincRNA gene predicted gene, 47926
Tssr93151 10 43695450 to 43695469 19 + TSS region transcription start site region 93151
Tssr93152 10 43719632 to 43719634 2 + TSS region transcription start site region 93152
Cpgi1505 10 43723518 to 43723770 252 CpG island CpG island 1505
Gm40634 10 43741309 to 43743064 1755 - lincRNA gene predicted gene, 40634
1700027J07Rik 10 43746158 to 43765836 19678 + lincRNA gene RIKEN cDNA 1700027J07 gene
Tssr93153 10 43746540 to 43746556 16 + TSS region transcription start site region 93153
D10Mit55 10 43783590 to 43783690 100 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 55
Gm40635 10 43792585 to 43801108 8523 - lncRNA gene predicted gene, 40635
Gm9034 10 43821231 to 43822235 1004 + pseudogene predicted pseudogene 9034
Tssr93154 10 43825887 to 43825918 31 + TSS region transcription start site region 93154
4933404K13Rik 10 43825907 to 43833301 7394 + lincRNA gene RIKEN cDNA 4933404K13 gene
Tssr93155 10 43828786 to 43828790 4 + TSS region transcription start site region 93155
Tssr97475 10 43829194 to 43829197 3 - TSS region transcription start site region 97475
Tssr97476 10 43829200 to 43829215 15 - TSS region transcription start site region 97476
Qrsl1 10 43874188 to 43901739 27551 - protein coding gene glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
Cpgi1506 10 43901292 to 43901932 640 CpG island CpG island 1506
Tssr97477 10 43901670 to 43901702 32 - TSS region transcription start site region 97477
Tssr97478 10 43901712 to 43901752 40 - TSS region transcription start site region 97478
Rtn4ip1 10 43901714 to 43947864 46150 + protein coding gene reticulon 4 interacting protein 1
Tssr93156 10 43901782 to 43901845 63 + TSS region transcription start site region 93156
Tssr93157 10 43901855 to 43901867 12 + TSS region transcription start site region 93157
Tssr93158 10 43902231 to 43902237 6 + TSS region transcription start site region 93158
Tssr93159 10 43927961 to 43927970 9 + TSS region transcription start site region 93159
Tssr93160 10 43947874 to 43947900 26 + TSS region transcription start site region 93160
Crybg1 10 43950636 to 44148853 198217 - protein coding gene crystallin beta-gamma domain containing 1
Gm40636 10 43968684 to 43985318 16634 + lncRNA gene predicted gene, 40636
Tssr97479 10 43971917 to 43971928 11 - TSS region transcription start site region 97479
Tssr97480 10 43971959 to 43971970 11 - TSS region transcription start site region 97480
Tssr97481 10 43972013 to 43972036 23 - TSS region transcription start site region 97481
Tssr97482 10 43980280 to 43980313 33 - TSS region transcription start site region 97482
Tssr97483 10 43996337 to 43996362 25 - TSS region transcription start site region 97483
Tssr97484 10 43997315 to 43997320 5 - TSS region transcription start site region 97484
Tssr97485 10 43997343 to 43997361 18 - TSS region transcription start site region 97485
Tssr97486 10 43997364 to 43997375 11 - TSS region transcription start site region 97486
Tssr97487 10 43997379 to 43997390 11 - TSS region transcription start site region 97487
Tssr97488 10 43997427 to 43997442 15 - TSS region transcription start site region 97488
Wght8 10 44000000 to 5000000 -39000000 QTL weight 8
Cpgi1507 10 44003378 to 44004721 1343 CpG island CpG island 1507
Tssr97489 10 44003576 to 44003587 11 - TSS region transcription start site region 97489
Tssr97490 10 44003590 to 44003644 54 - TSS region transcription start site region 97490
Tssr97491 10 44003813 to 44003818 5 - TSS region transcription start site region 97491
Tssr97492 10 44003832 to 44003898 66 - TSS region transcription start site region 97492
Gm10812 10 44004154 to 44004701 547 + pseudogene predicted gene 10812
Tssr97493 10 44004311 to 44004325 14 - TSS region transcription start site region 97493
Tssr97494 10 44004357 to 44004385 28 - TSS region transcription start site region 97494
Tssr97495 10 44004429 to 44004443 14 - TSS region transcription start site region 97495
Tssr97496 10 44004462 to 44004479 17 - TSS region transcription start site region 97496
Tssr97497 10 44004498 to 44004510 12 - TSS region transcription start site region 97497
Cpgi1508 10 44005677 to 44006119 442 CpG island CpG island 1508
Tssr93161 10 44016142 to 44016148 6 + TSS region transcription start site region 93161
Tssr97498 10 44022268 to 44022280 12 - TSS region transcription start site region 97498
Tssr97499 10 44022282 to 44022291 9 - TSS region transcription start site region 97499
Tssr3189 10 44058861 to 44058883 22 - TSS region transcription start site region 3189
Tssr97500 10 44058910 to 44058922 12 - TSS region transcription start site region 97500
D10Jpk3 10 44077431 to 44077562 131 DNA segment DNA segment, Chr 10, Japan, Kominami 3
Tssr97501 10 44099353 to 44099358 5 - TSS region transcription start site region 97501
repro3 10 44145937 to 46844387 2698450 heritable phenotypic marker reproductive mutation 3, JAX Reproductive Mutagenesis Program
D10Mit38 10 44145937 to 44146085 148 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 38
Cpgi1509 10 44148457 to 44149246 789 CpG island CpG island 1509
Tssr97502 10 44148787 to 44148804 17 - TSS region transcription start site region 97502
Tssr97503 10 44148816 to 44148834 18 - TSS region transcription start site region 97503
Tssr97504 10 44148847 to 44148858 11 - TSS region transcription start site region 97504
Tssr97505 10 44148941 to 44148950 9 - TSS region transcription start site region 97505
Tssr97506 10 44148962 to 44148969 7 - TSS region transcription start site region 97506
Gm5949 10 44153470 to 44154890 1420 + pseudogene predicted gene 5949
Gm18669 10 44169577 to 44170354 777 - pseudogene predicted gene, 18669
Tssr97507 10 44170303 to 44170351 48 - TSS region transcription start site region 97507
Tssr93162 10 44170442 to 44170467 25 + TSS region transcription start site region 93162
Speer5-ps1 10 44170447 to 44219585 49138 + pseudogene spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1
Tssr93163 10 44211376 to 44211380 4 + TSS region transcription start site region 93163
Gm40637 10 44267742 to 44268243 501 - lncRNA gene predicted gene, 40637
Cpgi1510 10 44267971 to 44268896 925 CpG island CpG island 1510
Tssr93164 10 44268328 to 44268379 51 + TSS region transcription start site region 93164
Atg5 10 44268358 to 44364291 95933 + protein coding gene autophagy related 5
Tssr93165 10 44268389 to 44268408 19 + TSS region transcription start site region 93165
Tssr93166 10 44268422 to 44268445 23 + TSS region transcription start site region 93166
Tssr93167 10 44268448 to 44268528 80 + TSS region transcription start site region 93167
Tssr93168 10 44270248 to 44270253 5 + TSS region transcription start site region 93168
Gm19229 10 44335782 to 44336301 519 - pseudogene predicted gene, 19229
Tssr93169 10 44358392 to 44358398 6 + TSS region transcription start site region 93169
Mir1929 10 44359676 to 44359768 92 + miRNA gene microRNA 1929
Gm35028 10 44418400 to 44424324 5924 - lincRNA gene predicted gene, 35028
Tssr97508 10 44423980 to 44423995 15 - TSS region transcription start site region 97508
Prdm1 10 44437177 to 44528501 91324 - protein coding gene PR domain containing 1, with ZNF domain
Tssr97509 10 44441223 to 44441257 34 - TSS region transcription start site region 97509
Cpgi1511 10 44457176 to 44457500 324 CpG island CpG island 1511
Cpgi1512 10 44458424 to 44459110 686 CpG island CpG island 1512
Tssr97510 10 44458569 to 44458584 15 - TSS region transcription start site region 97510
Tssr97511 10 44458668 to 44458681 13 - TSS region transcription start site region 97511
Tssr97512 10 44458687 to 44458714 27 - TSS region transcription start site region 97512
Tssr97513 10 44458715 to 44458751 36 - TSS region transcription start site region 97513
Tssr97514 10 44458769 to 44458784 15 - TSS region transcription start site region 97514
Tssr97515 10 44460960 to 44460967 7 - TSS region transcription start site region 97515
Tssr97516 10 44464195 to 44464215 20 - TSS region transcription start site region 97516
Tssr93170 10 44468839 to 44468848 9 + TSS region transcription start site region 93170
Tssr97517 10 44470709 to 44470721 12 - TSS region transcription start site region 97517
Tssr93171 10 44475987 to 44475996 9 + TSS region transcription start site region 93171
Cpgi1513 10 44527012 to 44527436 424 CpG island CpG island 1513
Cpgi1514 10 44529257 to 44529927 670 CpG island CpG island 1514
Gm48061 10 44580517 to 44590238 9721 - lincRNA gene predicted gene, 48061
Gm5950 10 44589928 to 44592573 2645 + pseudogene predicted gene 5950
Gm22087 10 44597240 to 44597327 87 - snRNA gene predicted gene, 22087
Gm48065 10 44597889 to 44602174 4285 - lincRNA gene predicted gene, 48065
Gm35154 10 44599113 to 44689114 90001 + lincRNA gene predicted gene, 35154
Tssr93172 10 44599816 to 44599868 52 + TSS region transcription start site region 93172
Tssr93173 10 44599877 to 44599906 29 + TSS region transcription start site region 93173
Tssr97518 10 44602167 to 44602193 26 - TSS region transcription start site region 97518
Tssr93174 10 44611821 to 44611841 20 + TSS region transcription start site region 93174
Tssr93175 10 44612001 to 44612012 11 + TSS region transcription start site region 93175
Tssr97519 10 44631661 to 44631686 25 - TSS region transcription start site region 97519
Gm48066 10 44647518 to 44662496 14978 + lincRNA gene predicted gene, 48066
Gm27977 10 44668384 to 44668494 110 + rRNA gene predicted gene, 27977
Tssr93176 10 44686246 to 44686250 4 + TSS region transcription start site region 93176
Gm47388 10 44697180 to 44699931 2751 + unclassified gene predicted gene, 47388
Gm47389 10 44715558 to 44717165 1607 + lincRNA gene predicted gene, 47389
D10Jcs17 10 44716771 to 44717057 286 DNA segment DNA segment, Chr 10, John C. Schimenti 17