Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:42545348-43175377

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nr2e1 10 42561963 to 42583588 21625 - protein coding gene nuclear receptor subfamily 2, group E, member 1
Cpgi1482 10 42572638 to 42573273 635 CpG island CpG island 1482
Tssr97446 10 42578302 to 42578313 11 - TSS region transcription start site region 97446
Cpgi1483 10 42579439 to 42580575 1136 CpG island CpG island 1483
Cpgi1484 10 42581967 to 42584951 2984 CpG island CpG island 1484
Tssr97447 10 42583579 to 42583595 16 - TSS region transcription start site region 97447
Tssr97448 10 42583604 to 42583616 12 - TSS region transcription start site region 97448
Tssr97449 10 42583628 to 42583639 11 - TSS region transcription start site region 97449
Tssr97450 10 42583646 to 42583664 18 - TSS region transcription start site region 97450
Gm38491 10 42583758 to 42587003 3245 + lncRNA gene predicted gene, 38491
Tssr93098 10 42583787 to 42583811 24 + TSS region transcription start site region 93098
Cpgi1485 10 42591254 to 42592530 1276 CpG island CpG island 1485
Gm5036 10 42591674 to 42593752 2078 - pseudogene predicted gene 5036
Cpgi1486 10 42614089 to 42614451 362 CpG island CpG island 1486
Tssr93099 10 42614235 to 42614258 23 + TSS region transcription start site region 93099
Cpgi1487 10 42631707 to 42632253 546 CpG island CpG island 1487
Cpgi1488 10 42632302 to 42632453 151 CpG island CpG island 1488
Cpgi1489 10 42633042 to 42633375 333 CpG island CpG island 1489
Cpgi1490 10 42633801 to 42634080 279 CpG island CpG island 1490
Cpgi1491 10 42635785 to 42636263 478 CpG island CpG island 1491
Cpgi1492 10 42636735 to 42637248 513 CpG island CpG island 1492
D10Dcr8 10 42653252 to 42653347 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 8
Cpgi1493 10 42678628 to 42679414 786 CpG island CpG island 1493
Tssr93100 10 42678890 to 42678948 58 + TSS region transcription start site region 93100
Ostm1 10 42678916 to 42702462 23546 + protein coding gene osteopetrosis associated transmembrane protein 1
Tssr93101 10 42678951 to 42678975 24 + TSS region transcription start site region 93101
Gm15200 10 42698036 to 42698518 482 - antisense lncRNA gene predicted gene 15200
Tssr97451 10 42699079 to 42699090 11 - TSS region transcription start site region 97451
Tssr93102 10 42700726 to 42700729 3 + TSS region transcription start site region 93102
D10Mit108 10 42733710 to 42733851 141 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 108
Gm15199 10 42740539 to 42758660 18121 - antisense lncRNA gene predicted gene 15199
Cpgi1494 10 42761176 to 42762487 1311 CpG island CpG island 1494
Tssr93103 10 42761483 to 42761490 7 + TSS region transcription start site region 93103
Sec63 10 42761496 to 42832514 71018 + protein coding gene SEC63-like (S. cerevisiae)
Tssr93104 10 42761540 to 42761607 67 + TSS region transcription start site region 93104
Gm26860 10 42761596 to 42763635 2039 - lincRNA gene predicted gene, 26860
Tssr93105 10 42761609 to 42761663 54 + TSS region transcription start site region 93105
Tssr97452 10 42762340 to 42762351 11 - TSS region transcription start site region 97452
Tssr93106 10 42767103 to 42767113 10 + TSS region transcription start site region 93106
Tssr97453 10 42768232 to 42768233 1 - TSS region transcription start site region 97453
Tssr93107 10 42782530 to 42782546 16 + TSS region transcription start site region 93107
Tssr93108 10 42806612 to 42806641 29 + TSS region transcription start site region 93108
Tssr93109 10 42812431 to 42812460 29 + TSS region transcription start site region 93109
Gm26464 10 42820463 to 42820767 304 - ribozyme gene predicted gene, 26464
Tssr93110 10 42827851 to 42827864 13 + TSS region transcription start site region 93110
Tssr93111 10 42827873 to 42827885 12 + TSS region transcription start site region 93111
4921519G19Rik 10 42854867 to 42856682 1815 unclassified gene RIKEN cDNA 4921519G19 gene
Gm33916 10 42856411 to 42858897 2486 + lncRNA gene predicted gene, 33916
Tssr93112 10 42860348 to 42860377 29 + TSS region transcription start site region 93112
Scml4 10 42860370 to 42960780 100410 + protein coding gene Scm polycomb group protein like 4
Tssr93113 10 42860624 to 42860627 3 + TSS region transcription start site region 93113
Tssr93114 10 42860648 to 42860676 28 + TSS region transcription start site region 93114
Tssr93115 10 42860682 to 42860692 10 + TSS region transcription start site region 93115
Tssr93116 10 42860695 to 42860714 19 + TSS region transcription start site region 93116
Tssr93117 10 42860741 to 42860746 5 + TSS region transcription start site region 93117
Tssr93118 10 42860748 to 42860759 11 + TSS region transcription start site region 93118
Tssr93119 10 42860776 to 42860810 34 + TSS region transcription start site region 93119
Gm34006 10 42861382 to 42864699 3317 - antisense lncRNA gene predicted gene, 34006
Tssr93120 10 42861578 to 42861588 10 + TSS region transcription start site region 93120
Tssr97454 10 42863997 to 42864000 3 - TSS region transcription start site region 97454
Cpgi1495 10 42864101 to 42864457 356 CpG island CpG island 1495
Tssr97455 10 42864221 to 42864240 19 - TSS region transcription start site region 97455
Gm48671 10 42886705 to 42888797 2092 - lincRNA gene predicted gene, 48671
Gm48670 10 42886892 to 42887465 573 + pseudogene predicted gene, 48670
Tssr97456 10 42888459 to 42888471 12 - TSS region transcription start site region 97456
Tssr97457 10 42888474 to 42888486 12 - TSS region transcription start site region 97457
Tssr93121 10 42897867 to 42897888 21 + TSS region transcription start site region 93121
Tssr93122 10 42897919 to 42897931 12 + TSS region transcription start site region 93122
Tssr93123 10 42901620 to 42901637 17 + TSS region transcription start site region 93123
Tssr93124 10 42901650 to 42901669 19 + TSS region transcription start site region 93124
Cpgi1496 10 42930305 to 42930620 315 CpG island CpG island 1496
Tssr93125 10 42934910 to 42934917 7 + TSS region transcription start site region 93125
Tssr93126 10 42940412 to 42940444 32 + TSS region transcription start site region 93126
Tssr93127 10 42940454 to 42940484 30 + TSS region transcription start site region 93127
Gm5079 10 42975770 to 42986086 10316 - lncRNA gene predicted gene 5079
Tssr97458 10 42999148 to 42999161 13 - TSS region transcription start site region 97458
Sobp 10 43002500 to 43174530 172030 - protein coding gene sine oculis binding protein
Tssr97459 10 43002691 to 43002715 24 - TSS region transcription start site region 97459
Cpgi1497 10 43020842 to 43022670 1828 CpG island CpG island 1497
Gm47815 10 43034993 to 43050219 15226 + antisense lncRNA gene predicted gene, 47815
Tssr97460 10 43108854 to 43108858 4 - TSS region transcription start site region 97460
Gm29245 10 43154216 to 43155631 1415 + antisense lncRNA gene predicted gene 29245
Cpgi1498 10 43173072 to 43175664 2592 CpG island CpG island 1498
Gm29246 10 43173263 to 43173958 695 + antisense lncRNA gene predicted gene 29246
Tssr97461 10 43174453 to 43174476 23 - TSS region transcription start site region 97461
Tssr97462 10 43174496 to 43174516 20 - TSS region transcription start site region 97462
Tssr97463 10 43174521 to 43174569 48 - TSS region transcription start site region 97463
Tssr97464 10 43174577 to 43174580 3 - TSS region transcription start site region 97464
Tssr97465 10 43174589 to 43174615 26 - TSS region transcription start site region 97465
9030612E09Rik 10 43174704 to 43176562 1858 + unclassified gene RIKEN cDNA 9030612E09 gene