Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:42273916-43107462

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Foxo3 10 42181845 to 42276746 94901 - protein coding gene forkhead box O3
Gm38485 10 42247436 to 42274809 27373 - lncRNA gene predicted gene, 38485
Tssr97432 10 42273921 to 42273943 22 - TSS region transcription start site region 97432
Tssr93078 10 42274080 to 42274098 18 + TSS region transcription start site region 93078
Cpgi1479 10 42274400 to 42278743 4343 CpG island CpG island 1479
Tssr97433 10 42275624 to 42275652 28 - TSS region transcription start site region 97433
Tssr97434 10 42276645 to 42276656 11 - TSS region transcription start site region 97434
Tssr97435 10 42276665 to 42276681 16 - TSS region transcription start site region 97435
Tssr97436 10 42276688 to 42276743 55 - TSS region transcription start site region 97436
Tssr97437 10 42276744 to 42276763 19 - TSS region transcription start site region 97437
Gm33333 10 42276824 to 42286320 9496 + lncRNA gene predicted gene, 33333
Tssr93079 10 42276892 to 42276900 8 + TSS region transcription start site region 93079
Tssr97438 10 42277600 to 42277614 14 - TSS region transcription start site region 97438
Tssr97439 10 42277635 to 42277640 5 - TSS region transcription start site region 97439
Tssr93080 10 42308420 to 42308425 5 + TSS region transcription start site region 93080
Gm23533 10 42309775 to 42310019 244 + unclassified non-coding RNA gene predicted gene, 23533
Afg1l 10 42312585 to 42478565 165980 - protein coding gene AFG1 like ATPase
Gm15197 10 42330786 to 42331263 477 - pseudogene predicted gene 15197
Tssr3187 10 42334169 to 42334174 5 + TSS region transcription start site region 3187
Tssr93081 10 42349875 to 42349876 1 + TSS region transcription start site region 93081
D10Mit254 10 42361495 to 42361618 123 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 254
D10Mit184 10 42368699 to 42368826 127 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 184
Tssr97440 10 42388327 to 42388331 4 - TSS region transcription start site region 97440
Gm15198 10 42435889 to 42436065 176 + pseudogene predicted gene 15198
Tssr97441 10 42475070 to 42475085 15 - TSS region transcription start site region 97441
Tssr97442 10 42475101 to 42475119 18 - TSS region transcription start site region 97442
Cpgi1480 10 42478070 to 42478732 662 CpG island CpG island 1480
Tssr97443 10 42478399 to 42478443 44 - TSS region transcription start site region 97443
Tssr97444 10 42478488 to 42478503 15 - TSS region transcription start site region 97444
Gm25277 10 42493423 to 42493746 323 - unclassified non-coding RNA gene predicted gene, 25277
Cpgi1481 10 42501621 to 42503099 1478 CpG island CpG island 1481
Tssr93082 10 42502036 to 42502041 5 + TSS region transcription start site region 93082
Tssr93083 10 42502048 to 42502055 7 + TSS region transcription start site region 93083
Snx3 10 42502054 to 42535369 33315 + protein coding gene sorting nexin 3
Tssr93084 10 42502060 to 42502083 23 + TSS region transcription start site region 93084
Tssr93085 10 42502102 to 42502113 11 + TSS region transcription start site region 93085
Tssr93086 10 42502125 to 42502136 11 + TSS region transcription start site region 93086
Tssr93087 10 42502184 to 42502195 11 + TSS region transcription start site region 93087
Tssr93088 10 42502197 to 42502282 85 + TSS region transcription start site region 93088
Tssr97445 10 42502827 to 42502846 19 - TSS region transcription start site region 97445
Tssr93089 10 42533143 to 42533166 23 + TSS region transcription start site region 93089
Tssr93090 10 42533202 to 42533216 14 + TSS region transcription start site region 93090
Tssr93091 10 42534642 to 42534669 27 + TSS region transcription start site region 93091
Tssr93092 10 42534809 to 42534828 19 + TSS region transcription start site region 93092
Tssr93093 10 42534859 to 42534875 16 + TSS region transcription start site region 93093
Tssr93094 10 42534904 to 42534927 23 + TSS region transcription start site region 93094
Tssr93095 10 42534990 to 42535019 29 + TSS region transcription start site region 93095
Tssr93096 10 42535042 to 42535053 11 + TSS region transcription start site region 93096
Tssr93097 10 42535096 to 42535120 24 + TSS region transcription start site region 93097
Nr2e1 10 42561963 to 42583588 21625 - protein coding gene nuclear receptor subfamily 2, group E, member 1
Cpgi1482 10 42572638 to 42573273 635 CpG island CpG island 1482
Tssr97446 10 42578302 to 42578313 11 - TSS region transcription start site region 97446
Cpgi1483 10 42579439 to 42580575 1136 CpG island CpG island 1483
Cpgi1484 10 42581967 to 42584951 2984 CpG island CpG island 1484
Tssr97447 10 42583579 to 42583595 16 - TSS region transcription start site region 97447
Tssr97448 10 42583604 to 42583616 12 - TSS region transcription start site region 97448
Tssr97449 10 42583628 to 42583639 11 - TSS region transcription start site region 97449
Tssr97450 10 42583646 to 42583664 18 - TSS region transcription start site region 97450
Gm38491 10 42583758 to 42587003 3245 + lncRNA gene predicted gene, 38491
Tssr93098 10 42583787 to 42583811 24 + TSS region transcription start site region 93098
Cpgi1485 10 42591254 to 42592530 1276 CpG island CpG island 1485
Gm5036 10 42591674 to 42593752 2078 - pseudogene predicted gene 5036
Cpgi1486 10 42614089 to 42614451 362 CpG island CpG island 1486
Tssr93099 10 42614235 to 42614258 23 + TSS region transcription start site region 93099
Cpgi1487 10 42631707 to 42632253 546 CpG island CpG island 1487
Cpgi1488 10 42632302 to 42632453 151 CpG island CpG island 1488
Cpgi1489 10 42633042 to 42633375 333 CpG island CpG island 1489
Cpgi1490 10 42633801 to 42634080 279 CpG island CpG island 1490
Cpgi1491 10 42635785 to 42636263 478 CpG island CpG island 1491
Cpgi1492 10 42636735 to 42637248 513 CpG island CpG island 1492
D10Dcr8 10 42653252 to 42653347 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 8
Cpgi1493 10 42678628 to 42679414 786 CpG island CpG island 1493
Tssr93100 10 42678890 to 42678948 58 + TSS region transcription start site region 93100
Ostm1 10 42678916 to 42702462 23546 + protein coding gene osteopetrosis associated transmembrane protein 1
Tssr93101 10 42678951 to 42678975 24 + TSS region transcription start site region 93101
Gm15200 10 42698036 to 42698518 482 - antisense lncRNA gene predicted gene 15200
Tssr97451 10 42699079 to 42699090 11 - TSS region transcription start site region 97451
Tssr93102 10 42700726 to 42700729 3 + TSS region transcription start site region 93102
D10Mit108 10 42733710 to 42733851 141 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 108
Gm15199 10 42740539 to 42758660 18121 - antisense lncRNA gene predicted gene 15199
Cpgi1494 10 42761176 to 42762487 1311 CpG island CpG island 1494
Tssr93103 10 42761483 to 42761490 7 + TSS region transcription start site region 93103
Sec63 10 42761496 to 42832514 71018 + protein coding gene SEC63-like (S. cerevisiae)
Tssr93104 10 42761540 to 42761607 67 + TSS region transcription start site region 93104
Gm26860 10 42761596 to 42763635 2039 - lincRNA gene predicted gene, 26860
Tssr93105 10 42761609 to 42761663 54 + TSS region transcription start site region 93105
Tssr97452 10 42762340 to 42762351 11 - TSS region transcription start site region 97452
Tssr93106 10 42767103 to 42767113 10 + TSS region transcription start site region 93106
Tssr97453 10 42768232 to 42768233 1 - TSS region transcription start site region 97453
Tssr93107 10 42782530 to 42782546 16 + TSS region transcription start site region 93107
Tssr93108 10 42806612 to 42806641 29 + TSS region transcription start site region 93108
Tssr93109 10 42812431 to 42812460 29 + TSS region transcription start site region 93109
Gm26464 10 42820463 to 42820767 304 - ribozyme gene predicted gene, 26464
Tssr93110 10 42827851 to 42827864 13 + TSS region transcription start site region 93110
Tssr93111 10 42827873 to 42827885 12 + TSS region transcription start site region 93111
4921519G19Rik 10 42854867 to 42856682 1815 unclassified gene RIKEN cDNA 4921519G19 gene
Gm33916 10 42856411 to 42858897 2486 + lncRNA gene predicted gene, 33916
Tssr93112 10 42860348 to 42860377 29 + TSS region transcription start site region 93112
Scml4 10 42860370 to 42960780 100410 + protein coding gene Scm polycomb group protein like 4
Tssr93113 10 42860624 to 42860627 3 + TSS region transcription start site region 93113
Tssr93114 10 42860648 to 42860676 28 + TSS region transcription start site region 93114
Tssr93115 10 42860682 to 42860692 10 + TSS region transcription start site region 93115
Tssr93116 10 42860695 to 42860714 19 + TSS region transcription start site region 93116
Tssr93117 10 42860741 to 42860746 5 + TSS region transcription start site region 93117
Tssr93118 10 42860748 to 42860759 11 + TSS region transcription start site region 93118
Tssr93119 10 42860776 to 42860810 34 + TSS region transcription start site region 93119
Gm34006 10 42861382 to 42864699 3317 - antisense lncRNA gene predicted gene, 34006
Tssr93120 10 42861578 to 42861588 10 + TSS region transcription start site region 93120
Tssr97454 10 42863997 to 42864000 3 - TSS region transcription start site region 97454
Cpgi1495 10 42864101 to 42864457 356 CpG island CpG island 1495
Tssr97455 10 42864221 to 42864240 19 - TSS region transcription start site region 97455
Gm48671 10 42886705 to 42888797 2092 - lincRNA gene predicted gene, 48671
Gm48670 10 42886892 to 42887465 573 + pseudogene predicted gene, 48670
Tssr97456 10 42888459 to 42888471 12 - TSS region transcription start site region 97456
Tssr97457 10 42888474 to 42888486 12 - TSS region transcription start site region 97457
Tssr93121 10 42897867 to 42897888 21 + TSS region transcription start site region 93121
Tssr93122 10 42897919 to 42897931 12 + TSS region transcription start site region 93122
Tssr93123 10 42901620 to 42901637 17 + TSS region transcription start site region 93123
Tssr93124 10 42901650 to 42901669 19 + TSS region transcription start site region 93124
Cpgi1496 10 42930305 to 42930620 315 CpG island CpG island 1496
Tssr93125 10 42934910 to 42934917 7 + TSS region transcription start site region 93125
Tssr93126 10 42940412 to 42940444 32 + TSS region transcription start site region 93126
Tssr93127 10 42940454 to 42940484 30 + TSS region transcription start site region 93127
Gm5079 10 42975770 to 42986086 10316 - lncRNA gene predicted gene 5079
Tssr97458 10 42999148 to 42999161 13 - TSS region transcription start site region 97458
Sobp 10 43002500 to 43174530 172030 - protein coding gene sine oculis binding protein
Tssr97459 10 43002691 to 43002715 24 - TSS region transcription start site region 97459
Cpgi1497 10 43020842 to 43022670 1828 CpG island CpG island 1497
Gm47815 10 43034993 to 43050219 15226 + antisense lncRNA gene predicted gene, 47815