Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:41958420-42658425

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Armc2 10 41914990 to 42018442 103452 - protein coding gene armadillo repeat containing 2
Gm33058 10 41958324 to 41975065 16741 + lncRNA gene predicted gene, 33058
Tssr93074 10 41959126 to 41959130 4 + TSS region transcription start site region 93074
Cpgi1477 10 42017880 to 42018627 747 CpG island CpG island 1477
Tssr93075 10 42018174 to 42018203 29 + TSS region transcription start site region 93075
1700016J18Rik 10 42018216 to 42018810 594 + bidirectional promoter lncRNA gene RIKEN cDNA 1700016J18 gene
Tssr97423 10 42018363 to 42018401 38 - TSS region transcription start site region 97423
D10Mit193 10 42029819 to 42029943 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 193
Cpgi1478 10 42031117 to 42031470 353 CpG island CpG island 1478
Gm40630 10 42041555 to 42081937 40382 - lncRNA gene predicted gene, 40630
Gm9855 10 42054113 to 42055306 1193 - pseudogene predicted pseudogene 9855
Tssr97424 10 42068606 to 42068617 11 - TSS region transcription start site region 97424
3110001L01Rik 10 42089609 to 42090200 591 unclassified gene RIKEN cDNA 3110001L01 gene
Tssr93076 10 42140937 to 42140952 15 + TSS region transcription start site region 93076
Foxo3 10 42181845 to 42276746 94901 - protein coding gene forkhead box O3
Tssr97425 10 42182228 to 42182252 24 - TSS region transcription start site region 97425
Tssr97426 10 42182447 to 42182451 4 - TSS region transcription start site region 97426
Tssr93077 10 42184372 to 42184373 1 + TSS region transcription start site region 93077
Tssr97427 10 42191999 to 42192015 16 - TSS region transcription start site region 97427
Tssr97428 10 42192019 to 42192038 19 - TSS region transcription start site region 97428
D10Mit255 10 42238875 to 42239012 137 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 255
Gm38485 10 42247436 to 42274809 27373 - lncRNA gene predicted gene, 38485
Tssr97429 10 42264202 to 42264212 10 - TSS region transcription start site region 97429
Tssr97430 10 42270341 to 42270346 5 - TSS region transcription start site region 97430
Tssr97431 10 42270921 to 42270941 20 - TSS region transcription start site region 97431
Tssr97432 10 42273921 to 42273943 22 - TSS region transcription start site region 97432
Tssr93078 10 42274080 to 42274098 18 + TSS region transcription start site region 93078
Cpgi1479 10 42274400 to 42278743 4343 CpG island CpG island 1479
Tssr97433 10 42275624 to 42275652 28 - TSS region transcription start site region 97433
Tssr97434 10 42276645 to 42276656 11 - TSS region transcription start site region 97434
Tssr97435 10 42276665 to 42276681 16 - TSS region transcription start site region 97435
Tssr97436 10 42276688 to 42276743 55 - TSS region transcription start site region 97436
Tssr97437 10 42276744 to 42276763 19 - TSS region transcription start site region 97437
Gm33333 10 42276824 to 42286320 9496 + lncRNA gene predicted gene, 33333
Tssr93079 10 42276892 to 42276900 8 + TSS region transcription start site region 93079
Tssr97438 10 42277600 to 42277614 14 - TSS region transcription start site region 97438
Tssr97439 10 42277635 to 42277640 5 - TSS region transcription start site region 97439
Tssr93080 10 42308420 to 42308425 5 + TSS region transcription start site region 93080
Gm23533 10 42309775 to 42310019 244 + unclassified non-coding RNA gene predicted gene, 23533
Afg1l 10 42312585 to 42478565 165980 - protein coding gene AFG1 like ATPase
Gm15197 10 42330786 to 42331263 477 - pseudogene predicted gene 15197
Tssr3187 10 42334169 to 42334174 5 + TSS region transcription start site region 3187
Tssr93081 10 42349875 to 42349876 1 + TSS region transcription start site region 93081
D10Mit254 10 42361495 to 42361618 123 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 254
D10Mit184 10 42368699 to 42368826 127 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 184
Tssr97440 10 42388327 to 42388331 4 - TSS region transcription start site region 97440
Gm15198 10 42435889 to 42436065 176 + pseudogene predicted gene 15198
Tssr97441 10 42475070 to 42475085 15 - TSS region transcription start site region 97441
Tssr97442 10 42475101 to 42475119 18 - TSS region transcription start site region 97442
Cpgi1480 10 42478070 to 42478732 662 CpG island CpG island 1480
Tssr97443 10 42478399 to 42478443 44 - TSS region transcription start site region 97443
Tssr97444 10 42478488 to 42478503 15 - TSS region transcription start site region 97444
Gm25277 10 42493423 to 42493746 323 - unclassified non-coding RNA gene predicted gene, 25277
Cpgi1481 10 42501621 to 42503099 1478 CpG island CpG island 1481
Tssr93082 10 42502036 to 42502041 5 + TSS region transcription start site region 93082
Tssr93083 10 42502048 to 42502055 7 + TSS region transcription start site region 93083
Snx3 10 42502054 to 42535369 33315 + protein coding gene sorting nexin 3
Tssr93084 10 42502060 to 42502083 23 + TSS region transcription start site region 93084
Tssr93085 10 42502102 to 42502113 11 + TSS region transcription start site region 93085
Tssr93086 10 42502125 to 42502136 11 + TSS region transcription start site region 93086
Tssr93087 10 42502184 to 42502195 11 + TSS region transcription start site region 93087
Tssr93088 10 42502197 to 42502282 85 + TSS region transcription start site region 93088
Tssr97445 10 42502827 to 42502846 19 - TSS region transcription start site region 97445
Tssr93089 10 42533143 to 42533166 23 + TSS region transcription start site region 93089
Tssr93090 10 42533202 to 42533216 14 + TSS region transcription start site region 93090
Tssr93091 10 42534642 to 42534669 27 + TSS region transcription start site region 93091
Tssr93092 10 42534809 to 42534828 19 + TSS region transcription start site region 93092
Tssr93093 10 42534859 to 42534875 16 + TSS region transcription start site region 93093
Tssr93094 10 42534904 to 42534927 23 + TSS region transcription start site region 93094
Tssr93095 10 42534990 to 42535019 29 + TSS region transcription start site region 93095
Tssr93096 10 42535042 to 42535053 11 + TSS region transcription start site region 93096
Tssr93097 10 42535096 to 42535120 24 + TSS region transcription start site region 93097
Nr2e1 10 42561963 to 42583588 21625 - protein coding gene nuclear receptor subfamily 2, group E, member 1
Cpgi1482 10 42572638 to 42573273 635 CpG island CpG island 1482
Tssr97446 10 42578302 to 42578313 11 - TSS region transcription start site region 97446
Cpgi1483 10 42579439 to 42580575 1136 CpG island CpG island 1483
Cpgi1484 10 42581967 to 42584951 2984 CpG island CpG island 1484
Tssr97447 10 42583579 to 42583595 16 - TSS region transcription start site region 97447
Tssr97448 10 42583604 to 42583616 12 - TSS region transcription start site region 97448
Tssr97449 10 42583628 to 42583639 11 - TSS region transcription start site region 97449
Tssr97450 10 42583646 to 42583664 18 - TSS region transcription start site region 97450
Gm38491 10 42583758 to 42587003 3245 + lncRNA gene predicted gene, 38491
Tssr93098 10 42583787 to 42583811 24 + TSS region transcription start site region 93098
Cpgi1485 10 42591254 to 42592530 1276 CpG island CpG island 1485
Gm5036 10 42591674 to 42593752 2078 - pseudogene predicted gene 5036
Cpgi1486 10 42614089 to 42614451 362 CpG island CpG island 1486
Tssr93099 10 42614235 to 42614258 23 + TSS region transcription start site region 93099
Cpgi1487 10 42631707 to 42632253 546 CpG island CpG island 1487
Cpgi1488 10 42632302 to 42632453 151 CpG island CpG island 1488
Cpgi1489 10 42633042 to 42633375 333 CpG island CpG island 1489
Cpgi1490 10 42633801 to 42634080 279 CpG island CpG island 1490
Cpgi1491 10 42635785 to 42636263 478 CpG island CpG island 1491
Cpgi1492 10 42636735 to 42637248 513 CpG island CpG island 1492
D10Dcr8 10 42653252 to 42653347 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 8