Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:41539113-42570306

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc162 10 41538844 to 41716537 177693 - protein coding gene coiled-coil domain containing 162
Gm17196 10 41553762 to 41556552 2790 + antisense lncRNA gene predicted gene 17196
5730435O14Rik 10 41568016 to 41576476 8460 + lncRNA gene RIKEN cDNA 5730435O14 gene
D10Mit109 10 41576455 to 41576602 147 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 109
Tssr97409 10 41606450 to 41606456 6 - TSS region transcription start site region 97409
Tssr97410 10 41633864 to 41633875 11 - TSS region transcription start site region 97410
Tssr97411 10 41634142 to 41634151 9 - TSS region transcription start site region 97411
Mir3473b 10 41670739 to 41670793 54 + miRNA gene microRNA 3473b
Cpgi1474 10 41684556 to 41684781 225 CpG island CpG island 1474
Gm47099 10 41685771 to 41686056 285 - pseudogene predicted gene, 47099
Tssr93062 10 41685914 to 41685963 49 + TSS region transcription start site region 93062
Tssr97412 10 41685938 to 41685952 14 - TSS region transcription start site region 97412
Tssr97413 10 41685970 to 41685981 11 - TSS region transcription start site region 97413
Tssr97414 10 41685985 to 41686002 17 - TSS region transcription start site region 97414
Tssr97415 10 41716433 to 41716463 30 - TSS region transcription start site region 97415
Cep57l1 10 41718840 to 41809868 91028 - protein coding gene centrosomal protein 57-like 1
Tssr97416 10 41746382 to 41746403 21 - TSS region transcription start site region 97416
Tssr97417 10 41746633 to 41746650 17 - TSS region transcription start site region 97417
Tssr93063 10 41746749 to 41746758 9 + TSS region transcription start site region 93063
Tssr97418 10 41752211 to 41752267 56 - TSS region transcription start site region 97418
Tssr97419 10 41754914 to 41754922 8 - TSS region transcription start site region 97419
BC048559 10 41774580 to 41780734 6154 + antisense lncRNA gene cDNA sequence BC048559
Gm46222 10 41797597 to 41805332 7735 - pseudogene predicted gene, 46222
Cpgi1475 10 41809470 to 41811087 1617 CpG island CpG island 1475
Tssr97420 10 41809620 to 41809654 34 - TSS region transcription start site region 97420
Tssr97421 10 41809880 to 41809915 35 - TSS region transcription start site region 97421
Tssr93064 10 41809948 to 41809963 15 + TSS region transcription start site region 93064
Tssr93065 10 41809998 to 41810013 15 + TSS region transcription start site region 93065
Tssr93066 10 41810173 to 41810245 72 + TSS region transcription start site region 93066
Tssr93067 10 41810528 to 41810580 52 + TSS region transcription start site region 93067
Sesn1 10 41810574 to 41908436 97862 + protein coding gene sestrin 1
Tssr93068 10 41810844 to 41810861 17 + TSS region transcription start site region 93068
9930024M15Rik 10 41826538 to 41829121 2583 + unclassified gene RIKEN cDNA 9930024M15 gene
9830137J09Rik 10 41874166 to 41876629 2463 unclassified non-coding RNA gene Riken cDNA 9830137J09 gene
Cpgi1476 10 41887081 to 41887866 785 CpG island CpG island 1476
Tssr93069 10 41887428 to 41887455 27 + TSS region transcription start site region 93069
Tssr93070 10 41887457 to 41887498 41 + TSS region transcription start site region 93070
Tssr93071 10 41893947 to 41893959 12 + TSS region transcription start site region 93071
Tssr93072 10 41893967 to 41893978 11 + TSS region transcription start site region 93072
Tssr93073 10 41910887 to 41910890 3 + TSS region transcription start site region 93073
Armc2 10 41914990 to 42018442 103452 - protein coding gene armadillo repeat containing 2
Tssr97422 10 41933759 to 41933770 11 - TSS region transcription start site region 97422
Gm17869 10 41943301 to 41943971 670 - pseudogene predicted gene, 17869
Gm33058 10 41958324 to 41975065 16741 + lncRNA gene predicted gene, 33058
Tssr93074 10 41959126 to 41959130 4 + TSS region transcription start site region 93074
Cpgi1477 10 42017880 to 42018627 747 CpG island CpG island 1477
Tssr93075 10 42018174 to 42018203 29 + TSS region transcription start site region 93075
1700016J18Rik 10 42018216 to 42018810 594 + bidirectional promoter lncRNA gene RIKEN cDNA 1700016J18 gene
Tssr97423 10 42018363 to 42018401 38 - TSS region transcription start site region 97423
D10Mit193 10 42029819 to 42029943 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 193
Cpgi1478 10 42031117 to 42031470 353 CpG island CpG island 1478
Gm40630 10 42041555 to 42081937 40382 - lncRNA gene predicted gene, 40630
Gm9855 10 42054113 to 42055306 1193 - pseudogene predicted pseudogene 9855
Tssr97424 10 42068606 to 42068617 11 - TSS region transcription start site region 97424
3110001L01Rik 10 42089609 to 42090200 591 unclassified gene RIKEN cDNA 3110001L01 gene
Tssr93076 10 42140937 to 42140952 15 + TSS region transcription start site region 93076
Foxo3 10 42181845 to 42276746 94901 - protein coding gene forkhead box O3
Tssr97425 10 42182228 to 42182252 24 - TSS region transcription start site region 97425
Tssr97426 10 42182447 to 42182451 4 - TSS region transcription start site region 97426
Tssr93077 10 42184372 to 42184373 1 + TSS region transcription start site region 93077
Tssr97427 10 42191999 to 42192015 16 - TSS region transcription start site region 97427
Tssr97428 10 42192019 to 42192038 19 - TSS region transcription start site region 97428
D10Mit255 10 42238875 to 42239012 137 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 255
Gm38485 10 42247436 to 42274809 27373 - lncRNA gene predicted gene, 38485
Tssr97429 10 42264202 to 42264212 10 - TSS region transcription start site region 97429
Tssr97430 10 42270341 to 42270346 5 - TSS region transcription start site region 97430
Tssr97431 10 42270921 to 42270941 20 - TSS region transcription start site region 97431
Tssr97432 10 42273921 to 42273943 22 - TSS region transcription start site region 97432
Tssr93078 10 42274080 to 42274098 18 + TSS region transcription start site region 93078
Cpgi1479 10 42274400 to 42278743 4343 CpG island CpG island 1479
Tssr97433 10 42275624 to 42275652 28 - TSS region transcription start site region 97433
Tssr97434 10 42276645 to 42276656 11 - TSS region transcription start site region 97434
Tssr97435 10 42276665 to 42276681 16 - TSS region transcription start site region 97435
Tssr97436 10 42276688 to 42276743 55 - TSS region transcription start site region 97436
Tssr97437 10 42276744 to 42276763 19 - TSS region transcription start site region 97437
Gm33333 10 42276824 to 42286320 9496 + lncRNA gene predicted gene, 33333
Tssr93079 10 42276892 to 42276900 8 + TSS region transcription start site region 93079
Tssr97438 10 42277600 to 42277614 14 - TSS region transcription start site region 97438
Tssr97439 10 42277635 to 42277640 5 - TSS region transcription start site region 97439
Tssr93080 10 42308420 to 42308425 5 + TSS region transcription start site region 93080
Gm23533 10 42309775 to 42310019 244 + unclassified non-coding RNA gene predicted gene, 23533
Afg1l 10 42312585 to 42478565 165980 - protein coding gene AFG1 like ATPase
Gm15197 10 42330786 to 42331263 477 - pseudogene predicted gene 15197
Tssr3187 10 42334169 to 42334174 5 + TSS region transcription start site region 3187
Tssr93081 10 42349875 to 42349876 1 + TSS region transcription start site region 93081
D10Mit254 10 42361495 to 42361618 123 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 254
D10Mit184 10 42368699 to 42368826 127 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 184
Tssr97440 10 42388327 to 42388331 4 - TSS region transcription start site region 97440
Gm15198 10 42435889 to 42436065 176 + pseudogene predicted gene 15198
Tssr97441 10 42475070 to 42475085 15 - TSS region transcription start site region 97441
Tssr97442 10 42475101 to 42475119 18 - TSS region transcription start site region 97442
Cpgi1480 10 42478070 to 42478732 662 CpG island CpG island 1480
Tssr97443 10 42478399 to 42478443 44 - TSS region transcription start site region 97443
Tssr97444 10 42478488 to 42478503 15 - TSS region transcription start site region 97444
Gm25277 10 42493423 to 42493746 323 - unclassified non-coding RNA gene predicted gene, 25277
Cpgi1481 10 42501621 to 42503099 1478 CpG island CpG island 1481
Tssr93082 10 42502036 to 42502041 5 + TSS region transcription start site region 93082
Tssr93083 10 42502048 to 42502055 7 + TSS region transcription start site region 93083
Snx3 10 42502054 to 42535369 33315 + protein coding gene sorting nexin 3
Tssr93084 10 42502060 to 42502083 23 + TSS region transcription start site region 93084
Tssr93085 10 42502102 to 42502113 11 + TSS region transcription start site region 93085
Tssr93086 10 42502125 to 42502136 11 + TSS region transcription start site region 93086
Tssr93087 10 42502184 to 42502195 11 + TSS region transcription start site region 93087
Tssr93088 10 42502197 to 42502282 85 + TSS region transcription start site region 93088
Tssr97445 10 42502827 to 42502846 19 - TSS region transcription start site region 97445
Tssr93089 10 42533143 to 42533166 23 + TSS region transcription start site region 93089
Tssr93090 10 42533202 to 42533216 14 + TSS region transcription start site region 93090
Tssr93091 10 42534642 to 42534669 27 + TSS region transcription start site region 93091
Tssr93092 10 42534809 to 42534828 19 + TSS region transcription start site region 93092
Tssr93093 10 42534859 to 42534875 16 + TSS region transcription start site region 93093
Tssr93094 10 42534904 to 42534927 23 + TSS region transcription start site region 93094
Tssr93095 10 42534990 to 42535019 29 + TSS region transcription start site region 93095
Tssr93096 10 42535042 to 42535053 11 + TSS region transcription start site region 93096
Tssr93097 10 42535096 to 42535120 24 + TSS region transcription start site region 93097
Nr2e1 10 42561963 to 42583588 21625 - protein coding gene nuclear receptor subfamily 2, group E, member 1