Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:41487211-42017267

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smpd2 10 41487172 to 41490371 3199 - protein coding gene sphingomyelin phosphodiesterase 2, neutral
Tssr97403 10 41488886 to 41488917 31 - TSS region transcription start site region 97403
Cpgi1472 10 41489612 to 41490851 1239 CpG island CpG island 1472
Tssr3186 10 41490107 to 41490151 44 - TSS region transcription start site region 3186
Tssr97404 10 41490328 to 41490331 3 - TSS region transcription start site region 97404
Tssr97405 10 41490335 to 41490368 33 - TSS region transcription start site region 97405
Tssr97406 10 41490369 to 41490380 11 - TSS region transcription start site region 97406
Tssr93046 10 41490436 to 41490483 47 + TSS region transcription start site region 93046
Ppil6 10 41490439 to 41514286 23847 + protein coding gene peptidylprolyl isomerase (cyclophilin)-like 6
Tssr93047 10 41501276 to 41501325 49 + TSS region transcription start site region 93047
Cpgi1473 10 41518560 to 41520201 1641 CpG island CpG island 1473
Tssr97407 10 41519077 to 41519103 26 - TSS region transcription start site region 97407
Tssr97408 10 41519109 to 41519120 11 - TSS region transcription start site region 97408
Tssr93048 10 41519436 to 41519447 11 + TSS region transcription start site region 93048
Tssr93049 10 41519455 to 41519480 25 + TSS region transcription start site region 93049
Tssr93050 10 41519493 to 41519516 23 + TSS region transcription start site region 93050
Cd164 10 41519500 to 41531042 11542 + protein coding gene CD164 antigen
Tssr93051 10 41519730 to 41519743 13 + TSS region transcription start site region 93051
Tssr93052 10 41519817 to 41519833 16 + TSS region transcription start site region 93052
Tssr93053 10 41519850 to 41519859 9 + TSS region transcription start site region 93053
Tssr93054 10 41519874 to 41519927 53 + TSS region transcription start site region 93054
Tssr93055 10 41519948 to 41519961 13 + TSS region transcription start site region 93055
Tssr93056 10 41519980 to 41519989 9 + TSS region transcription start site region 93056
Tssr93057 10 41519990 to 41520000 10 + TSS region transcription start site region 93057
Tssr93058 10 41520529 to 41520534 5 + TSS region transcription start site region 93058
Tssr93059 10 41526818 to 41526854 36 + TSS region transcription start site region 93059
Tssr93060 10 41528748 to 41528759 11 + TSS region transcription start site region 93060
Tssr93061 10 41529546 to 41529560 14 + TSS region transcription start site region 93061
Ccdc162 10 41538844 to 41716537 177693 - protein coding gene coiled-coil domain containing 162
Gm17196 10 41553762 to 41556552 2790 + antisense lncRNA gene predicted gene 17196
5730435O14Rik 10 41568016 to 41576476 8460 + lncRNA gene RIKEN cDNA 5730435O14 gene
D10Mit109 10 41576455 to 41576602 147 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 109
Tssr97409 10 41606450 to 41606456 6 - TSS region transcription start site region 97409
Tssr97410 10 41633864 to 41633875 11 - TSS region transcription start site region 97410
Tssr97411 10 41634142 to 41634151 9 - TSS region transcription start site region 97411
Mir3473b 10 41670739 to 41670793 54 + miRNA gene microRNA 3473b
Cpgi1474 10 41684556 to 41684781 225 CpG island CpG island 1474
Gm47099 10 41685771 to 41686056 285 - pseudogene predicted gene, 47099
Tssr93062 10 41685914 to 41685963 49 + TSS region transcription start site region 93062
Tssr97412 10 41685938 to 41685952 14 - TSS region transcription start site region 97412
Tssr97413 10 41685970 to 41685981 11 - TSS region transcription start site region 97413
Tssr97414 10 41685985 to 41686002 17 - TSS region transcription start site region 97414
Tssr97415 10 41716433 to 41716463 30 - TSS region transcription start site region 97415
Cep57l1 10 41718840 to 41809868 91028 - protein coding gene centrosomal protein 57-like 1
Tssr97416 10 41746382 to 41746403 21 - TSS region transcription start site region 97416
Tssr97417 10 41746633 to 41746650 17 - TSS region transcription start site region 97417
Tssr93063 10 41746749 to 41746758 9 + TSS region transcription start site region 93063
Tssr97418 10 41752211 to 41752267 56 - TSS region transcription start site region 97418
Tssr97419 10 41754914 to 41754922 8 - TSS region transcription start site region 97419
BC048559 10 41774580 to 41780734 6154 + antisense lncRNA gene cDNA sequence BC048559
Gm46222 10 41797597 to 41805332 7735 - pseudogene predicted gene, 46222
Cpgi1475 10 41809470 to 41811087 1617 CpG island CpG island 1475
Tssr97420 10 41809620 to 41809654 34 - TSS region transcription start site region 97420
Tssr97421 10 41809880 to 41809915 35 - TSS region transcription start site region 97421
Tssr93064 10 41809948 to 41809963 15 + TSS region transcription start site region 93064
Tssr93065 10 41809998 to 41810013 15 + TSS region transcription start site region 93065
Tssr93066 10 41810173 to 41810245 72 + TSS region transcription start site region 93066
Tssr93067 10 41810528 to 41810580 52 + TSS region transcription start site region 93067
Sesn1 10 41810574 to 41908436 97862 + protein coding gene sestrin 1
Tssr93068 10 41810844 to 41810861 17 + TSS region transcription start site region 93068
9930024M15Rik 10 41826538 to 41829121 2583 + unclassified gene RIKEN cDNA 9930024M15 gene
9830137J09Rik 10 41874166 to 41876629 2463 unclassified non-coding RNA gene Riken cDNA 9830137J09 gene
Cpgi1476 10 41887081 to 41887866 785 CpG island CpG island 1476
Tssr93069 10 41887428 to 41887455 27 + TSS region transcription start site region 93069
Tssr93070 10 41887457 to 41887498 41 + TSS region transcription start site region 93070
Tssr93071 10 41893947 to 41893959 12 + TSS region transcription start site region 93071
Tssr93072 10 41893967 to 41893978 11 + TSS region transcription start site region 93072
Tssr93073 10 41910887 to 41910890 3 + TSS region transcription start site region 93073
Armc2 10 41914990 to 42018442 103452 - protein coding gene armadillo repeat containing 2
Tssr97422 10 41933759 to 41933770 11 - TSS region transcription start site region 97422
Gm17869 10 41943301 to 41943971 670 - pseudogene predicted gene, 17869
Gm33058 10 41958324 to 41975065 16741 + lncRNA gene predicted gene, 33058
Tssr93074 10 41959126 to 41959130 4 + TSS region transcription start site region 93074