Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:41023840-42504868

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48057 10 41035195 to 41037214 2019 + lincRNA gene predicted gene, 48057
Gm19611 10 41046841 to 41049104 2263 - pseudogene predicted gene, 19611
Gpr6 10 41069977 to 41072285 2308 - protein coding gene G protein-coupled receptor 6
Cpgi1465 10 41070572 to 41071930 1358 CpG island CpG island 1465
Cpgi1466 10 41072049 to 41072429 380 CpG island CpG island 1466
Tssr97394 10 41072279 to 41072290 11 - TSS region transcription start site region 97394
Tssr97395 10 41072292 to 41072308 16 - TSS region transcription start site region 97395
Gm32284 10 41082816 to 41097910 15094 + lincRNA gene predicted gene, 32284
Tssr93040 10 41100967 to 41100968 1 + TSS region transcription start site region 93040
Gm32338 10 41102539 to 41135046 32507 - lincRNA gene predicted gene, 32338
Gm32411 10 41135153 to 41138185 3032 - lncRNA gene predicted gene, 32411
Cpgi1467 10 41151566 to 41151758 192 CpG island CpG island 1467
Fig4 10 41188172 to 41303241 115069 - protein coding gene FIG4 phosphoinositide 5-phosphatase
Gm25526 10 41216045 to 41216176 131 + snoRNA gene predicted gene, 25526
Tssr97396 10 41221320 to 41221332 12 - TSS region transcription start site region 97396
Tssr97397 10 41221397 to 41221402 5 - TSS region transcription start site region 97397
Tssr3185 10 41239865 to 41239866 1 + TSS region transcription start site region 3185
Cpgi1468 10 41302742 to 41303333 591 CpG island CpG island 1468
Tssr97398 10 41303095 to 41303140 45 - TSS region transcription start site region 97398
Tssr97399 10 41303171 to 41303250 79 - TSS region transcription start site region 97399
Ak9 10 41303432 to 41433569 130137 + protein coding gene adenylate kinase 9
Tssr93041 10 41303925 to 41303966 41 + TSS region transcription start site region 93041
Tssr93042 10 41303968 to 41303975 7 + TSS region transcription start site region 93042
Tssr93043 10 41343211 to 41343222 11 + TSS region transcription start site region 93043
Gm18305 10 41362837 to 41364964 2127 - pseudogene predicted gene, 18305
Gm18986 10 41378896 to 41380881 1985 - pseudogene predicted gene, 18986
Gm25626 10 41387900 to 41388006 106 + snRNA gene predicted gene, 25626
Gm47473 10 41403547 to 41403831 284 - pseudogene predicted gene, 47473
Gm27783 10 41408173 to 41408277 104 - rRNA gene predicted gene, 27783
Gm46221 10 41440918 to 41444303 3385 + protein coding gene predicted gene, 46221
Tssr97400 10 41450229 to 41450249 20 - TSS region transcription start site region 97400
Cpgi1469 10 41450268 to 41450894 626 CpG island CpG island 1469
Tssr93044 10 41450363 to 41450421 58 + TSS region transcription start site region 93044
Zbtb24 10 41450383 to 41465574 15191 + protein coding gene zinc finger and BTB domain containing 24
Cpgi1470 10 41475925 to 41476692 767 CpG island CpG island 1470
Mical1 10 41476314 to 41487032 10718 + protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing 1
Tssr93045 10 41476326 to 41476392 66 + TSS region transcription start site region 93045
Tssr97401 10 41477202 to 41477234 32 - TSS region transcription start site region 97401
Cpgi1471 10 41477383 to 41477548 165 CpG island CpG island 1471
Tssr97402 10 41477577 to 41477580 3 - TSS region transcription start site region 97402
Smpd2 10 41487172 to 41490371 3199 - protein coding gene sphingomyelin phosphodiesterase 2, neutral
Tssr97403 10 41488886 to 41488917 31 - TSS region transcription start site region 97403
Cpgi1472 10 41489612 to 41490851 1239 CpG island CpG island 1472
Tssr3186 10 41490107 to 41490151 44 - TSS region transcription start site region 3186
Tssr97404 10 41490328 to 41490331 3 - TSS region transcription start site region 97404
Tssr97405 10 41490335 to 41490368 33 - TSS region transcription start site region 97405
Tssr97406 10 41490369 to 41490380 11 - TSS region transcription start site region 97406
Tssr93046 10 41490436 to 41490483 47 + TSS region transcription start site region 93046
Ppil6 10 41490439 to 41514286 23847 + protein coding gene peptidylprolyl isomerase (cyclophilin)-like 6
Tssr93047 10 41501276 to 41501325 49 + TSS region transcription start site region 93047
Cpgi1473 10 41518560 to 41520201 1641 CpG island CpG island 1473
Tssr97407 10 41519077 to 41519103 26 - TSS region transcription start site region 97407
Tssr97408 10 41519109 to 41519120 11 - TSS region transcription start site region 97408
Tssr93048 10 41519436 to 41519447 11 + TSS region transcription start site region 93048
Tssr93049 10 41519455 to 41519480 25 + TSS region transcription start site region 93049
Tssr93050 10 41519493 to 41519516 23 + TSS region transcription start site region 93050
Cd164 10 41519500 to 41531042 11542 + protein coding gene CD164 antigen
Tssr93051 10 41519730 to 41519743 13 + TSS region transcription start site region 93051
Tssr93052 10 41519817 to 41519833 16 + TSS region transcription start site region 93052
Tssr93053 10 41519850 to 41519859 9 + TSS region transcription start site region 93053
Tssr93054 10 41519874 to 41519927 53 + TSS region transcription start site region 93054
Tssr93055 10 41519948 to 41519961 13 + TSS region transcription start site region 93055
Tssr93056 10 41519980 to 41519989 9 + TSS region transcription start site region 93056
Tssr93057 10 41519990 to 41520000 10 + TSS region transcription start site region 93057
Tssr93058 10 41520529 to 41520534 5 + TSS region transcription start site region 93058
Tssr93059 10 41526818 to 41526854 36 + TSS region transcription start site region 93059
Tssr93060 10 41528748 to 41528759 11 + TSS region transcription start site region 93060
Tssr93061 10 41529546 to 41529560 14 + TSS region transcription start site region 93061
Ccdc162 10 41538844 to 41716537 177693 - protein coding gene coiled-coil domain containing 162
Gm17196 10 41553762 to 41556552 2790 + antisense lncRNA gene predicted gene 17196
5730435O14Rik 10 41568016 to 41576476 8460 + lncRNA gene RIKEN cDNA 5730435O14 gene
D10Mit109 10 41576455 to 41576602 147 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 109
Tssr97409 10 41606450 to 41606456 6 - TSS region transcription start site region 97409
Tssr97410 10 41633864 to 41633875 11 - TSS region transcription start site region 97410
Tssr97411 10 41634142 to 41634151 9 - TSS region transcription start site region 97411
Mir3473b 10 41670739 to 41670793 54 + miRNA gene microRNA 3473b
Cpgi1474 10 41684556 to 41684781 225 CpG island CpG island 1474
Gm47099 10 41685771 to 41686056 285 - pseudogene predicted gene, 47099
Tssr93062 10 41685914 to 41685963 49 + TSS region transcription start site region 93062
Tssr97412 10 41685938 to 41685952 14 - TSS region transcription start site region 97412
Tssr97413 10 41685970 to 41685981 11 - TSS region transcription start site region 97413
Tssr97414 10 41685985 to 41686002 17 - TSS region transcription start site region 97414
Tssr97415 10 41716433 to 41716463 30 - TSS region transcription start site region 97415
Cep57l1 10 41718840 to 41809868 91028 - protein coding gene centrosomal protein 57-like 1
Tssr97416 10 41746382 to 41746403 21 - TSS region transcription start site region 97416
Tssr97417 10 41746633 to 41746650 17 - TSS region transcription start site region 97417
Tssr93063 10 41746749 to 41746758 9 + TSS region transcription start site region 93063
Tssr97418 10 41752211 to 41752267 56 - TSS region transcription start site region 97418
Tssr97419 10 41754914 to 41754922 8 - TSS region transcription start site region 97419
BC048559 10 41774580 to 41780734 6154 + antisense lncRNA gene cDNA sequence BC048559
Gm46222 10 41797597 to 41805332 7735 - pseudogene predicted gene, 46222
Cpgi1475 10 41809470 to 41811087 1617 CpG island CpG island 1475
Tssr97420 10 41809620 to 41809654 34 - TSS region transcription start site region 97420
Tssr97421 10 41809880 to 41809915 35 - TSS region transcription start site region 97421
Tssr93064 10 41809948 to 41809963 15 + TSS region transcription start site region 93064
Tssr93065 10 41809998 to 41810013 15 + TSS region transcription start site region 93065
Tssr93066 10 41810173 to 41810245 72 + TSS region transcription start site region 93066
Tssr93067 10 41810528 to 41810580 52 + TSS region transcription start site region 93067
Sesn1 10 41810574 to 41908436 97862 + protein coding gene sestrin 1
Tssr93068 10 41810844 to 41810861 17 + TSS region transcription start site region 93068
9930024M15Rik 10 41826538 to 41829121 2583 + unclassified gene RIKEN cDNA 9930024M15 gene
9830137J09Rik 10 41874166 to 41876629 2463 unclassified non-coding RNA gene Riken cDNA 9830137J09 gene
Cpgi1476 10 41887081 to 41887866 785 CpG island CpG island 1476
Tssr93069 10 41887428 to 41887455 27 + TSS region transcription start site region 93069
Tssr93070 10 41887457 to 41887498 41 + TSS region transcription start site region 93070
Tssr93071 10 41893947 to 41893959 12 + TSS region transcription start site region 93071
Tssr93072 10 41893967 to 41893978 11 + TSS region transcription start site region 93072
Tssr93073 10 41910887 to 41910890 3 + TSS region transcription start site region 93073
Armc2 10 41914990 to 42018442 103452 - protein coding gene armadillo repeat containing 2
Tssr97422 10 41933759 to 41933770 11 - TSS region transcription start site region 97422
Gm17869 10 41943301 to 41943971 670 - pseudogene predicted gene, 17869
Gm33058 10 41958324 to 41975065 16741 + lncRNA gene predicted gene, 33058
Tssr93074 10 41959126 to 41959130 4 + TSS region transcription start site region 93074
Cpgi1477 10 42017880 to 42018627 747 CpG island CpG island 1477
Tssr93075 10 42018174 to 42018203 29 + TSS region transcription start site region 93075
1700016J18Rik 10 42018216 to 42018810 594 + bidirectional promoter lncRNA gene RIKEN cDNA 1700016J18 gene
Tssr97423 10 42018363 to 42018401 38 - TSS region transcription start site region 97423
D10Mit193 10 42029819 to 42029943 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 193
Cpgi1478 10 42031117 to 42031470 353 CpG island CpG island 1478
Gm40630 10 42041555 to 42081937 40382 - lncRNA gene predicted gene, 40630
Gm9855 10 42054113 to 42055306 1193 - pseudogene predicted pseudogene 9855
Tssr97424 10 42068606 to 42068617 11 - TSS region transcription start site region 97424
3110001L01Rik 10 42089609 to 42090200 591 unclassified gene RIKEN cDNA 3110001L01 gene
Tssr93076 10 42140937 to 42140952 15 + TSS region transcription start site region 93076
Foxo3 10 42181845 to 42276746 94901 - protein coding gene forkhead box O3
Tssr97425 10 42182228 to 42182252 24 - TSS region transcription start site region 97425
Tssr97426 10 42182447 to 42182451 4 - TSS region transcription start site region 97426
Tssr93077 10 42184372 to 42184373 1 + TSS region transcription start site region 93077
Tssr97427 10 42191999 to 42192015 16 - TSS region transcription start site region 97427
Tssr97428 10 42192019 to 42192038 19 - TSS region transcription start site region 97428
D10Mit255 10 42238875 to 42239012 137 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 255
Gm38485 10 42247436 to 42274809 27373 - lncRNA gene predicted gene, 38485
Tssr97429 10 42264202 to 42264212 10 - TSS region transcription start site region 97429
Tssr97430 10 42270341 to 42270346 5 - TSS region transcription start site region 97430
Tssr97431 10 42270921 to 42270941 20 - TSS region transcription start site region 97431
Tssr97432 10 42273921 to 42273943 22 - TSS region transcription start site region 97432
Tssr93078 10 42274080 to 42274098 18 + TSS region transcription start site region 93078
Cpgi1479 10 42274400 to 42278743 4343 CpG island CpG island 1479
Tssr97433 10 42275624 to 42275652 28 - TSS region transcription start site region 97433
Tssr97434 10 42276645 to 42276656 11 - TSS region transcription start site region 97434
Tssr97435 10 42276665 to 42276681 16 - TSS region transcription start site region 97435
Tssr97436 10 42276688 to 42276743 55 - TSS region transcription start site region 97436
Tssr97437 10 42276744 to 42276763 19 - TSS region transcription start site region 97437
Gm33333 10 42276824 to 42286320 9496 + lncRNA gene predicted gene, 33333
Tssr93079 10 42276892 to 42276900 8 + TSS region transcription start site region 93079
Tssr97438 10 42277600 to 42277614 14 - TSS region transcription start site region 97438
Tssr97439 10 42277635 to 42277640 5 - TSS region transcription start site region 97439
Tssr93080 10 42308420 to 42308425 5 + TSS region transcription start site region 93080
Gm23533 10 42309775 to 42310019 244 + unclassified non-coding RNA gene predicted gene, 23533
Afg1l 10 42312585 to 42478565 165980 - protein coding gene AFG1 like ATPase
Gm15197 10 42330786 to 42331263 477 - pseudogene predicted gene 15197
Tssr3187 10 42334169 to 42334174 5 + TSS region transcription start site region 3187
Tssr93081 10 42349875 to 42349876 1 + TSS region transcription start site region 93081
D10Mit254 10 42361495 to 42361618 123 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 254
D10Mit184 10 42368699 to 42368826 127 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 184
Tssr97440 10 42388327 to 42388331 4 - TSS region transcription start site region 97440
Gm15198 10 42435889 to 42436065 176 + pseudogene predicted gene 15198
Tssr97441 10 42475070 to 42475085 15 - TSS region transcription start site region 97441
Tssr97442 10 42475101 to 42475119 18 - TSS region transcription start site region 97442
Cpgi1480 10 42478070 to 42478732 662 CpG island CpG island 1480
Tssr97443 10 42478399 to 42478443 44 - TSS region transcription start site region 97443
Tssr97444 10 42478488 to 42478503 15 - TSS region transcription start site region 97444
Gm25277 10 42493423 to 42493746 323 - unclassified non-coding RNA gene predicted gene, 25277
Cpgi1481 10 42501621 to 42503099 1478 CpG island CpG island 1481
Tssr93082 10 42502036 to 42502041 5 + TSS region transcription start site region 93082
Tssr93083 10 42502048 to 42502055 7 + TSS region transcription start site region 93083
Snx3 10 42502054 to 42535369 33315 + protein coding gene sorting nexin 3
Tssr93084 10 42502060 to 42502083 23 + TSS region transcription start site region 93084
Tssr93085 10 42502102 to 42502113 11 + TSS region transcription start site region 93085
Tssr93086 10 42502125 to 42502136 11 + TSS region transcription start site region 93086
Tssr93087 10 42502184 to 42502195 11 + TSS region transcription start site region 93087
Tssr93088 10 42502197 to 42502282 85 + TSS region transcription start site region 93088
Tssr97445 10 42502827 to 42502846 19 - TSS region transcription start site region 97445