Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 10:40249287-40583818

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45 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gtf3c6 10 40247701 to 40257712 10011 - protein coding gene general transcription factor IIIC, polypeptide 6, alpha
Cpgi1455 10 40257388 to 40257950 562 CpG island CpG island 1455
Tssr97382 10 40257648 to 40257687 39 - TSS region transcription start site region 97382
Tssr93011 10 40257708 to 40257735 27 + TSS region transcription start site region 93011
Tssr97383 10 40258082 to 40258092 10 - TSS region transcription start site region 97383
Tssr97384 10 40258112 to 40258132 20 - TSS region transcription start site region 97384
Tssr93012 10 40258463 to 40258470 7 + TSS region transcription start site region 93012
Snord3a 10 40258468 to 40258679 211 + snoRNA gene small nucleolar RNA, C/D box 3A
A930033M14Rik 10 40260934 to 40261333 399 + lncRNA gene RIKEN cDNA A930033M14 gene
Gm47867 10 40280683 to 40282053 1370 - pseudogene predicted gene, 47867
Tssr93013 10 40284019 to 40284024 5 + TSS region transcription start site region 93013
Amd1 10 40287458 to 40302188 14730 - protein coding gene S-adenosylmethionine decarboxylase 1
Cpgi1456 10 40300671 to 40301777 1106 CpG island CpG island 1456
Tssr93014 10 40300942 to 40300987 45 + TSS region transcription start site region 93014
Cpgi1457 10 40302160 to 40302882 722 CpG island CpG island 1457
Tssr97385 10 40302186 to 40302206 20 - TSS region transcription start site region 97385
Gm8948 10 40333951 to 40334320 369 + pseudogene predicted gene 8948
Cdk19os 10 40348508 to 40350103 1595 - antisense lncRNA gene cyclin-dependent kinase 19, opposite strand
Tssr97386 10 40348638 to 40348677 39 - TSS region transcription start site region 97386
Cpgi1458 10 40348758 to 40350245 1487 CpG island CpG island 1458
Tssr93015 10 40349265 to 40349387 122 + TSS region transcription start site region 93015
Cdk19 10 40349287 to 40483818 134531 + protein coding gene cyclin-dependent kinase 19
Tssr93016 10 40349474 to 40349518 44 + TSS region transcription start site region 93016
Tssr97387 10 40350002 to 40350009 7 - TSS region transcription start site region 97387
Tssr97388 10 40350027 to 40350101 74 - TSS region transcription start site region 97388
Tssr97389 10 40350111 to 40350120 9 - TSS region transcription start site region 97389
Gm8067 10 40383963 to 40384524 561 - pseudogene predicted gene 8067
Tssr93017 10 40386384 to 40386391 7 + TSS region transcription start site region 93017
Tssr3183 10 40421891 to 40421936 45 + TSS region transcription start site region 3183
Cpgi1459 10 40425465 to 40425620 155 CpG island CpG island 1459
Tssr93018 10 40426802 to 40426814 12 + TSS region transcription start site region 93018
Tssr93019 10 40433889 to 40433900 11 + TSS region transcription start site region 93019
Tssr93020 10 40444833 to 40444858 25 + TSS region transcription start site region 93020
Gm32234 10 40454082 to 40466627 12545 + protein coding gene predicted gene, 32234
Tssr93021 10 40477680 to 40477727 47 + TSS region transcription start site region 93021
Tssr97390 10 40502861 to 40502905 44 - TSS region transcription start site region 97390
Cpgi1460 10 40536937 to 40537389 452 CpG island CpG island 1460
Gm18671 10 40548892 to 40549574 682 + pseudogene predicted gene, 18671
Gm17795 10 40565916 to 40566672 756 - pseudogene predicted gene, 17795
Cpgi1461 10 40570275 to 40570589 314 CpG island CpG island 1461
Tssr93022 10 40570332 to 40570352 20 + TSS region transcription start site region 93022
Slc22a16 10 40570336 to 40604132 33796 + protein coding gene solute carrier family 22 (organic cation transporter), member 16
Tssr93023 10 40570357 to 40570362 5 + TSS region transcription start site region 93023
Tssr93024 10 40570371 to 40570390 19 + TSS region transcription start site region 93024
Tssr93025 10 40570609 to 40570618 9 + TSS region transcription start site region 93025