Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:39804546-43254560

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421 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rev3l 10 39732118 to 39875211 143093 + protein coding gene REV3 like, DNA directed polymerase zeta catalytic subunit
Tssr93008 10 39822566 to 39822581 15 + TSS region transcription start site region 93008
Tssr93009 10 39823933 to 39823950 17 + TSS region transcription start site region 93009
A130048E20Rik 10 39856217 to 39858724 2507 unclassified gene RIKEN cDNA A130048E20 gene
Gm26824 10 39864859 to 39866332 1473 - lincRNA gene predicted gene, 26824
Mfsd4b4 10 39892760 to 39899238 6478 - protein coding gene major facilitator superfamily domain containing 4B4
Tssr97344 10 39894084 to 39894105 21 - TSS region transcription start site region 97344
Cpgi1449 10 39898719 to 39899431 712 CpG island CpG island 1449
Tssr97345 10 39899161 to 39899184 23 - TSS region transcription start site region 97345
Tssr97346 10 39899187 to 39899270 83 - TSS region transcription start site region 97346
4930547M16Rik 10 39899283 to 39907082 7799 + bidirectional promoter lncRNA gene RIKEN cDNA 4930547M16 gene
Tssr93010 10 39899304 to 39899352 48 + TSS region transcription start site region 93010
Gm8911 10 39911149 to 39911800 651 + pseudogene predicted gene 8911
Mfsd4b2-ps 10 39920382 to 39926923 6541 - pseudogene major facilitator superfamily domain containing 4B2, pseudogene
Cpgi1450 10 39926438 to 39927246 808 CpG island CpG island 1450
Tssr97347 10 39926928 to 39926944 16 - TSS region transcription start site region 97347
Gm31848 10 39936855 to 39939963 3108 + lncRNA gene predicted gene, 31848
Gm45962 10 39938944 to 39941938 2994 + pseudogene predicted gene, 45962
Mfsd4b3-ps 10 39946912 to 39960153 13241 - pseudogene major facilitator superfamily domain containing 4B3, pseudogene
Mfsd4b5 10 39958061 to 39986646 28585 - protein coding gene major facilitator superfamily domain containing 4B5
Cpgi1451 10 39959687 to 39960403 716 CpG island CpG island 1451
Tssr97348 10 39960144 to 39960162 18 - TSS region transcription start site region 97348
Tssr97349 10 39960172 to 39960187 15 - TSS region transcription start site region 97349
Tssr97350 10 39960195 to 39960233 38 - TSS region transcription start site region 97350
Tssr97351 10 39960243 to 39960283 40 - TSS region transcription start site region 97351
Tssr97352 10 39986595 to 39986608 13 - TSS region transcription start site region 97352
Tssr97353 10 39986614 to 39986623 9 - TSS region transcription start site region 97353
Tssr97354 10 39986625 to 39986648 23 - TSS region transcription start site region 97354
Mfsd4b1 10 40001575 to 40025268 23693 - protein coding gene major facilitator superfamily domain containing 4B1
Gm48839 10 40009555 to 40009936 381 + pseudogene predicted gene, 48839
Gm8055 10 40011866 to 40012873 1007 + pseudogene predicted pseudogene 8055
Cpgi1452 10 40024735 to 40025477 742 CpG island CpG island 1452
Tssr97355 10 40025154 to 40025171 17 - TSS region transcription start site region 97355
Tssr97356 10 40025177 to 40025194 17 - TSS region transcription start site region 97356
Tssr97357 10 40025206 to 40025218 12 - TSS region transcription start site region 97357
Tssr97358 10 40025253 to 40025286 33 - TSS region transcription start site region 97358
Tssr97359 10 40025291 to 40025302 11 - TSS region transcription start site region 97359
Tssr97360 10 40025385 to 40025402 17 - TSS region transcription start site region 97360
Slc16a10 10 40033532 to 40142258 108726 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 10
Tssr97361 10 40033966 to 40033991 25 - TSS region transcription start site region 97361
Gm31930 10 40060053 to 40083206 23153 + lncRNA gene predicted gene, 31930
Tssr97362 10 40072260 to 40072268 8 - TSS region transcription start site region 97362
Tssr97363 10 40072992 to 40072996 4 - TSS region transcription start site region 97363
D10Mit53 10 40081183 to 40081383 200 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 53
Tssr97364 10 40098887 to 40098905 18 - TSS region transcription start site region 97364
Tssr97365 10 40099430 to 40099441 11 - TSS region transcription start site region 97365
Gm25613 10 40109462 to 40109590 128 + snoRNA gene predicted gene, 25613
Tssr97366 10 40128221 to 40128260 39 - TSS region transcription start site region 97366
Tssr97367 10 40128313 to 40128345 32 - TSS region transcription start site region 97367
Tssr97368 10 40128450 to 40128461 11 - TSS region transcription start site region 97368
Tssr97369 10 40128961 to 40129005 44 - TSS region transcription start site region 97369
Tssr97370 10 40129214 to 40129228 14 - TSS region transcription start site region 97370
Tssr97371 10 40129302 to 40129306 4 - TSS region transcription start site region 97371
Tssr97372 10 40129575 to 40129604 29 - TSS region transcription start site region 97372
Tssr97373 10 40134128 to 40134132 4 - TSS region transcription start site region 97373
Tssr97374 10 40135021 to 40135035 14 - TSS region transcription start site region 97374
D10Ertd276e 10 40136326 to 40136542 216 DNA segment DNA segment, Chr 10, ERATO Doi 276, expressed
Cpgi1453 10 40141486 to 40142554 1068 CpG island CpG island 1453
Tssr97375 10 40142247 to 40142260 13 - TSS region transcription start site region 97375
Gm31992 10 40164110 to 40169759 5649 + lincRNA gene predicted gene, 31992
Gm47598 10 40180657 to 40183692 3035 - lincRNA gene predicted gene, 47598
Gm37786 10 40219583 to 40222807 3224 - unclassified gene predicted gene, 37786
Rpf2 10 40223246 to 40247036 23790 - protein coding gene ribosome production factor 2 homolog
Tssr97376 10 40227816 to 40227824 8 - TSS region transcription start site region 97376
Tssr97377 10 40227835 to 40227848 13 - TSS region transcription start site region 97377
Tssr97378 10 40233370 to 40233383 13 - TSS region transcription start site region 97378
Tssr97379 10 40234893 to 40234896 3 - TSS region transcription start site region 97379
Cpgi1454 10 40246625 to 40247273 648 CpG island CpG island 1454
Tssr97380 10 40246991 to 40247045 54 - TSS region transcription start site region 97380
Tssr97381 10 40247117 to 40247135 18 - TSS region transcription start site region 97381
Gtf3c6 10 40247701 to 40257856 10155 - protein coding gene general transcription factor IIIC, polypeptide 6, alpha
Cpgi1455 10 40257388 to 40257950 562 CpG island CpG island 1455
Tssr97382 10 40257648 to 40257687 39 - TSS region transcription start site region 97382
Tssr93011 10 40257708 to 40257735 27 + TSS region transcription start site region 93011
Tssr97383 10 40258082 to 40258092 10 - TSS region transcription start site region 97383
Tssr97384 10 40258112 to 40258132 20 - TSS region transcription start site region 97384
Tssr93012 10 40258463 to 40258470 7 + TSS region transcription start site region 93012
Rnu3a 10 40258576 to 40258679 103 + snRNA gene U3A small nuclear RNA
A930033M14Rik 10 40260934 to 40261333 399 + lincRNA gene RIKEN cDNA A930033M14 gene
Gm47867 10 40280683 to 40282053 1370 - pseudogene predicted gene, 47867
Tssr93013 10 40284019 to 40284024 5 + TSS region transcription start site region 93013
Amd1 10 40287458 to 40302186 14728 - protein coding gene S-adenosylmethionine decarboxylase 1
Cpgi1456 10 40300671 to 40301777 1106 CpG island CpG island 1456
Tssr93014 10 40300942 to 40300987 45 + TSS region transcription start site region 93014
Cpgi1457 10 40302160 to 40302882 722 CpG island CpG island 1457
Tssr97385 10 40302186 to 40302206 20 - TSS region transcription start site region 97385
Gm8948 10 40333951 to 40334320 369 + pseudogene predicted gene 8948
Cdk19os 10 40348508 to 40350103 1595 - antisense lncRNA gene cyclin-dependent kinase 19, opposite strand
Tssr97386 10 40348638 to 40348677 39 - TSS region transcription start site region 97386
Cpgi1458 10 40348758 to 40350245 1487 CpG island CpG island 1458
Tssr93015 10 40349265 to 40349387 122 + TSS region transcription start site region 93015
Cdk19 10 40349308 to 40483818 134510 + protein coding gene cyclin-dependent kinase 19
Tssr93016 10 40349474 to 40349518 44 + TSS region transcription start site region 93016
Tssr97387 10 40350002 to 40350009 7 - TSS region transcription start site region 97387
Tssr97388 10 40350027 to 40350101 74 - TSS region transcription start site region 97388
Tssr97389 10 40350111 to 40350120 9 - TSS region transcription start site region 97389
Gm8067 10 40383963 to 40384524 561 - pseudogene predicted gene 8067
Tssr93017 10 40386384 to 40386391 7 + TSS region transcription start site region 93017
Tssr3183 10 40421891 to 40421936 45 + TSS region transcription start site region 3183
Cpgi1459 10 40425465 to 40425620 155 CpG island CpG island 1459
Tssr93018 10 40426802 to 40426814 12 + TSS region transcription start site region 93018
Tssr93019 10 40433889 to 40433900 11 + TSS region transcription start site region 93019
Tssr93020 10 40444833 to 40444858 25 + TSS region transcription start site region 93020
Gm32234 10 40464674 to 40466627 1953 + protein coding gene predicted gene, 32234
Tssr93021 10 40477680 to 40477727 47 + TSS region transcription start site region 93021
Tssr97390 10 40502861 to 40502905 44 - TSS region transcription start site region 97390
Cpgi1460 10 40536937 to 40537389 452 CpG island CpG island 1460
Gm18671 10 40548892 to 40549574 682 + pseudogene predicted gene, 18671
Gm17795 10 40565916 to 40566672 756 - pseudogene predicted gene, 17795
Cpgi1461 10 40570275 to 40570589 314 CpG island CpG island 1461
Tssr93022 10 40570332 to 40570352 20 + TSS region transcription start site region 93022
Slc22a16 10 40570336 to 40604132 33796 + protein coding gene solute carrier family 22 (organic cation transporter), member 16
Tssr93023 10 40570357 to 40570362 5 + TSS region transcription start site region 93023
Tssr93024 10 40570371 to 40570390 19 + TSS region transcription start site region 93024
Tssr93025 10 40570609 to 40570618 9 + TSS region transcription start site region 93025
Tssr93026 10 40629987 to 40630053 66 + TSS region transcription start site region 93026
Ddo 10 40630011 to 40681847 51836 + protein coding gene D-aspartate oxidase
Tssr93027 10 40630057 to 40630063 6 + TSS region transcription start site region 93027
Tssr3184 10 40645320 to 40645322 2 + TSS region transcription start site region 3184
Tssr93028 10 40673069 to 40673110 41 + TSS region transcription start site region 93028
Cpgi1462 10 40682972 to 40683761 789 CpG island CpG island 1462
Tssr93029 10 40683253 to 40683267 14 + TSS region transcription start site region 93029
Mettl24 10 40683282 to 40811083 127801 + protein coding gene methyltransferase like 24
Tssr93030 10 40703678 to 40703696 18 + TSS region transcription start site region 93030
Cpgi1463 10 40810469 to 40810662 193 CpG island CpG island 1463
Cdc40 10 40831621 to 40883143 51522 - protein coding gene cell division cycle 40
Gm22948 10 40875640 to 40875882 242 - unclassified non-coding RNA gene predicted gene, 22948
Cpgi1464 10 40882739 to 40884730 1991 CpG island CpG island 1464
Tssr97391 10 40883073 to 40883130 57 - TSS region transcription start site region 97391
Tssr93031 10 40883469 to 40883483 14 + TSS region transcription start site region 93031
Tssr93032 10 40883493 to 40883508 15 + TSS region transcription start site region 93032
Tssr93033 10 40883520 to 40883598 78 + TSS region transcription start site region 93033
Wasf1 10 40883534 to 40938569 55035 + protein coding gene WAS protein family, member 1
Tssr93034 10 40883620 to 40883634 14 + TSS region transcription start site region 93034
Tssr93035 10 40883819 to 40883862 43 + TSS region transcription start site region 93035
Tssr93036 10 40931919 to 40931938 19 + TSS region transcription start site region 93036
Tssr93037 10 40936171 to 40936206 35 + TSS region transcription start site region 93037
Tssr97392 10 40936174 to 40936188 14 - TSS region transcription start site region 97392
Tssr93038 10 40936399 to 40936416 17 + TSS region transcription start site region 93038
Tssr93039 10 40938191 to 40938200 9 + TSS region transcription start site region 93039
Tssr97393 10 40985683 to 40985688 5 - TSS region transcription start site region 97393
Gm48057 10 41035195 to 41037214 2019 + lincRNA gene predicted gene, 48057
Gm19611 10 41046841 to 41049104 2263 - pseudogene predicted gene, 19611
Gpr6 10 41069977 to 41072285 2308 - protein coding gene G protein-coupled receptor 6
Cpgi1465 10 41070572 to 41071930 1358 CpG island CpG island 1465
Cpgi1466 10 41072049 to 41072429 380 CpG island CpG island 1466
Tssr97394 10 41072279 to 41072290 11 - TSS region transcription start site region 97394
Tssr97395 10 41072292 to 41072308 16 - TSS region transcription start site region 97395
Gm32284 10 41082816 to 41097910 15094 + lincRNA gene predicted gene, 32284
Tssr93040 10 41100967 to 41100968 1 + TSS region transcription start site region 93040
Gm32338 10 41102539 to 41135046 32507 - lincRNA gene predicted gene, 32338
Gm32411 10 41135153 to 41138185 3032 - lncRNA gene predicted gene, 32411
Cpgi1467 10 41151566 to 41151758 192 CpG island CpG island 1467
Fig4 10 41188172 to 41303241 115069 - protein coding gene FIG4 phosphoinositide 5-phosphatase
Gm25526 10 41216045 to 41216176 131 + snoRNA gene predicted gene, 25526
Tssr97396 10 41221320 to 41221332 12 - TSS region transcription start site region 97396
Tssr97397 10 41221397 to 41221402 5 - TSS region transcription start site region 97397
Tssr3185 10 41239865 to 41239866 1 + TSS region transcription start site region 3185
Cpgi1468 10 41302742 to 41303333 591 CpG island CpG island 1468
Tssr97398 10 41303095 to 41303140 45 - TSS region transcription start site region 97398
Tssr97399 10 41303171 to 41303250 79 - TSS region transcription start site region 97399
Ak9 10 41303432 to 41433569 130137 + protein coding gene adenylate kinase 9
Tssr93041 10 41303925 to 41303966 41 + TSS region transcription start site region 93041
Tssr93042 10 41303968 to 41303975 7 + TSS region transcription start site region 93042
Tssr93043 10 41343211 to 41343222 11 + TSS region transcription start site region 93043
Gm18305 10 41362837 to 41364964 2127 - pseudogene predicted gene, 18305
Gm18986 10 41378896 to 41380881 1985 - pseudogene predicted gene, 18986
Gm25626 10 41387900 to 41388006 106 + snRNA gene predicted gene, 25626
Gm47473 10 41403547 to 41403831 284 - pseudogene predicted gene, 47473
Gm27783 10 41408173 to 41408277 104 - rRNA gene predicted gene, 27783
Gm46221 10 41440918 to 41444303 3385 + protein coding gene predicted gene, 46221
Tssr97400 10 41450229 to 41450249 20 - TSS region transcription start site region 97400
Cpgi1469 10 41450268 to 41450894 626 CpG island CpG island 1469
Tssr93044 10 41450363 to 41450421 58 + TSS region transcription start site region 93044
Zbtb24 10 41450383 to 41465574 15191 + protein coding gene zinc finger and BTB domain containing 24
Cpgi1470 10 41475925 to 41476692 767 CpG island CpG island 1470
Mical1 10 41476314 to 41487032 10718 + protein coding gene microtubule associated monooxygenase, calponin and LIM domain containing 1
Tssr93045 10 41476326 to 41476392 66 + TSS region transcription start site region 93045
Tssr97401 10 41477202 to 41477234 32 - TSS region transcription start site region 97401
Cpgi1471 10 41477383 to 41477548 165 CpG island CpG island 1471
Tssr97402 10 41477577 to 41477580 3 - TSS region transcription start site region 97402
Smpd2 10 41487172 to 41490371 3199 - protein coding gene sphingomyelin phosphodiesterase 2, neutral
Tssr97403 10 41488886 to 41488917 31 - TSS region transcription start site region 97403
Cpgi1472 10 41489612 to 41490851 1239 CpG island CpG island 1472
Tssr3186 10 41490107 to 41490151 44 - TSS region transcription start site region 3186
Tssr97404 10 41490328 to 41490331 3 - TSS region transcription start site region 97404
Tssr97405 10 41490335 to 41490368 33 - TSS region transcription start site region 97405
Tssr97406 10 41490369 to 41490380 11 - TSS region transcription start site region 97406
Tssr93046 10 41490436 to 41490483 47 + TSS region transcription start site region 93046
Ppil6 10 41490439 to 41514286 23847 + protein coding gene peptidylprolyl isomerase (cyclophilin)-like 6
Tssr93047 10 41501276 to 41501325 49 + TSS region transcription start site region 93047
Cpgi1473 10 41518560 to 41520201 1641 CpG island CpG island 1473
Tssr97407 10 41519077 to 41519103 26 - TSS region transcription start site region 97407
Tssr97408 10 41519109 to 41519120 11 - TSS region transcription start site region 97408
Tssr93048 10 41519436 to 41519447 11 + TSS region transcription start site region 93048
Tssr93049 10 41519455 to 41519480 25 + TSS region transcription start site region 93049
Tssr93050 10 41519493 to 41519516 23 + TSS region transcription start site region 93050
Cd164 10 41519500 to 41531042 11542 + protein coding gene CD164 antigen
Tssr93051 10 41519730 to 41519743 13 + TSS region transcription start site region 93051
Tssr93052 10 41519817 to 41519833 16 + TSS region transcription start site region 93052