Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:39148221-41108260

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218 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tube1 10 39133978 to 39151058 17080 + protein coding gene epsilon-tubulin 1
Ccn6 10 39150971 to 39163794 12823 - protein coding gene cellular communication network factor 6
Gm40625 10 39153231 to 39156244 3013 + lncRNA gene predicted gene, 40625
D030034A15Rik 10 39169300 to 39173252 3952 - lincRNA gene RIKEN cDNA D030034A15 gene
Cpgi1446 10 39171197 to 39171513 316 CpG island CpG island 1446
Tssr92977 10 39198433 to 39198442 9 + TSS region transcription start site region 92977
Gm6477 10 39198538 to 39199301 763 + pseudogene predicted gene 6477
Gm40626 10 39220646 to 39229693 9047 + lncRNA gene predicted gene, 40626
Tssr97331 10 39227764 to 39227765 1 - TSS region transcription start site region 97331
Gm31562 10 39245046 to 39255100 10054 + lincRNA gene predicted gene, 31562
Gm48486 10 39282341 to 39323417 41076 - lincRNA gene predicted gene, 48486
Gm31616 10 39368342 to 39369631 1289 - lncRNA gene predicted gene, 31616
Tssr92978 10 39369017 to 39369051 34 + TSS region transcription start site region 92978
Cpgi1447 10 39369333 to 39370660 1327 CpG island CpG island 1447
Tssr97332 10 39369560 to 39369595 35 - TSS region transcription start site region 97332
Tssr92979 10 39369728 to 39369739 11 + TSS region transcription start site region 92979
Tssr92980 10 39369750 to 39369804 54 + TSS region transcription start site region 92980
Fyn 10 39369769 to 39565381 195612 + protein coding gene Fyn proto-oncogene
Tssr92981 10 39369915 to 39369926 11 + TSS region transcription start site region 92981
Tssr92982 10 39369933 to 39369945 12 + TSS region transcription start site region 92982
Tssr92983 10 39413526 to 39413536 10 + TSS region transcription start site region 92983
Tssr92984 10 39420048 to 39420074 26 + TSS region transcription start site region 92984
Gm6963 10 39424618 to 39424996 378 - pseudogene predicted gene 6963
Tssr92985 10 39451284 to 39451325 41 + TSS region transcription start site region 92985
Tssr92986 10 39451487 to 39451495 8 + TSS region transcription start site region 92986
Tssr92987 10 39465461 to 39465485 24 + TSS region transcription start site region 92987
Tssr97333 10 39526108 to 39526111 3 - TSS region transcription start site region 97333
Tssr92988 10 39527558 to 39527606 48 + TSS region transcription start site region 92988
Tssr92989 10 39531845 to 39531884 39 + TSS region transcription start site region 92989
Tssr92990 10 39532096 to 39532102 6 + TSS region transcription start site region 92990
Tssr92991 10 39532987 to 39533014 27 + TSS region transcription start site region 92991
Tssr92992 10 39533136 to 39533147 11 + TSS region transcription start site region 92992
Tssr3182 10 39533260 to 39533273 13 + TSS region transcription start site region 3182
Tssr97334 10 39534760 to 39534775 15 - TSS region transcription start site region 97334
Tssr92993 10 39550988 to 39550994 6 + TSS region transcription start site region 92993
Tssr92994 10 39551457 to 39551484 27 + TSS region transcription start site region 92994
Gm16364 10 39556070 to 39558769 2699 - antisense lncRNA gene predicted gene 16364
Tssr92995 10 39558167 to 39558179 12 + TSS region transcription start site region 92995
Gm40627 10 39590365 to 39601694 11329 + lncRNA gene predicted gene, 40627
Traf3ip2 10 39612934 to 39655307 42373 + protein coding gene TRAF3 interacting protein 2
Tssr92996 10 39613135 to 39613154 19 + TSS region transcription start site region 92996
Tssr92997 10 39613187 to 39613249 62 + TSS region transcription start site region 92997
Tssr97335 10 39613635 to 39613686 51 - TSS region transcription start site region 97335
Tssr97336 10 39618577 to 39618595 18 - TSS region transcription start site region 97336
E130307A14Rik 10 39621412 to 39732007 110595 - antisense lncRNA gene RIKEN cDNA E130307A14 gene
Tssr97337 10 39638762 to 39638765 3 - TSS region transcription start site region 97337
Tssr92998 10 39641111 to 39641124 13 + TSS region transcription start site region 92998
Tssr92999 10 39641155 to 39641168 13 + TSS region transcription start site region 92999
2900078I11Rik 10 39657428 to 39658426 998 - unclassified gene RIKEN cDNA 2900078I11 gene
Gm8899 10 39662089 to 39663420 1331 + pseudogene predicted gene 8899
Tssr97338 10 39692316 to 39692319 3 - TSS region transcription start site region 97338
Tssr97339 10 39729839 to 39729844 5 - TSS region transcription start site region 97339
Cpgi1448 10 39731055 to 39733312 2257 CpG island CpG island 1448
Tssr97340 10 39731802 to 39731882 80 - TSS region transcription start site region 97340
Tssr97341 10 39731918 to 39731929 11 - TSS region transcription start site region 97341
Tssr97342 10 39731974 to 39732011 37 - TSS region transcription start site region 97342
Tssr93000 10 39732099 to 39732140 41 + TSS region transcription start site region 93000
Rev3l 10 39732118 to 39875211 143093 + protein coding gene REV3 like, DNA directed polymerase zeta catalytic subunit
Tssr93001 10 39732161 to 39732176 15 + TSS region transcription start site region 93001
Tssr93002 10 39732194 to 39732203 9 + TSS region transcription start site region 93002
Tssr93003 10 39732383 to 39732450 67 + TSS region transcription start site region 93003
Tssr93004 10 39736849 to 39736857 8 + TSS region transcription start site region 93004
Gm22105 10 39749317 to 39749432 115 + snRNA gene predicted gene, 22105
Gm16210 10 39752259 to 39752868 609 - pseudogene predicted gene 16210
Tssr97343 10 39752901 to 39752917 16 - TSS region transcription start site region 97343
Tssr93005 10 39777587 to 39777590 3 + TSS region transcription start site region 93005
Tssr93006 10 39794922 to 39794932 10 + TSS region transcription start site region 93006
Tssr93007 10 39801359 to 39801362 3 + TSS region transcription start site region 93007
Tssr93008 10 39822566 to 39822581 15 + TSS region transcription start site region 93008
Tssr93009 10 39823933 to 39823950 17 + TSS region transcription start site region 93009
A130048E20Rik 10 39856217 to 39858724 2507 unclassified gene RIKEN cDNA A130048E20 gene
Gm26824 10 39864859 to 39866332 1473 - lincRNA gene predicted gene, 26824
Mfsd4b4 10 39892760 to 39899238 6478 - protein coding gene major facilitator superfamily domain containing 4B4
Tssr97344 10 39894084 to 39894105 21 - TSS region transcription start site region 97344
Cpgi1449 10 39898719 to 39899431 712 CpG island CpG island 1449
Tssr97345 10 39899161 to 39899184 23 - TSS region transcription start site region 97345
Tssr97346 10 39899187 to 39899270 83 - TSS region transcription start site region 97346
4930547M16Rik 10 39899283 to 39907082 7799 + bidirectional promoter lncRNA gene RIKEN cDNA 4930547M16 gene
Tssr93010 10 39899304 to 39899352 48 + TSS region transcription start site region 93010
Gm8911 10 39911149 to 39911800 651 + pseudogene predicted gene 8911
Mfsd4b2-ps 10 39920382 to 39926923 6541 - pseudogene major facilitator superfamily domain containing 4B2, pseudogene
Cpgi1450 10 39926438 to 39927246 808 CpG island CpG island 1450
Tssr97347 10 39926928 to 39926944 16 - TSS region transcription start site region 97347
Gm31848 10 39936855 to 39939963 3108 + lncRNA gene predicted gene, 31848
Gm45962 10 39938944 to 39941938 2994 + pseudogene predicted gene, 45962
Mfsd4b3-ps 10 39946912 to 39960153 13241 - pseudogene major facilitator superfamily domain containing 4B3, pseudogene
Mfsd4b5 10 39958061 to 39986646 28585 - protein coding gene major facilitator superfamily domain containing 4B5
Cpgi1451 10 39959687 to 39960403 716 CpG island CpG island 1451
Tssr97348 10 39960144 to 39960162 18 - TSS region transcription start site region 97348
Tssr97349 10 39960172 to 39960187 15 - TSS region transcription start site region 97349
Tssr97350 10 39960195 to 39960233 38 - TSS region transcription start site region 97350
Tssr97351 10 39960243 to 39960283 40 - TSS region transcription start site region 97351
Tssr97352 10 39986595 to 39986608 13 - TSS region transcription start site region 97352
Tssr97353 10 39986614 to 39986623 9 - TSS region transcription start site region 97353
Tssr97354 10 39986625 to 39986648 23 - TSS region transcription start site region 97354
Mfsd4b1 10 40001575 to 40025268 23693 - protein coding gene major facilitator superfamily domain containing 4B1
Gm48839 10 40009555 to 40009936 381 + pseudogene predicted gene, 48839
Gm8055 10 40011866 to 40012873 1007 + pseudogene predicted pseudogene 8055
Cpgi1452 10 40024735 to 40025477 742 CpG island CpG island 1452
Tssr97355 10 40025154 to 40025171 17 - TSS region transcription start site region 97355
Tssr97356 10 40025177 to 40025194 17 - TSS region transcription start site region 97356
Tssr97357 10 40025206 to 40025218 12 - TSS region transcription start site region 97357
Tssr97358 10 40025253 to 40025286 33 - TSS region transcription start site region 97358
Tssr97359 10 40025291 to 40025302 11 - TSS region transcription start site region 97359
Tssr97360 10 40025385 to 40025402 17 - TSS region transcription start site region 97360
Slc16a10 10 40033532 to 40142258 108726 - protein coding gene solute carrier family 16 (monocarboxylic acid transporters), member 10
Tssr97361 10 40033966 to 40033991 25 - TSS region transcription start site region 97361
Gm31930 10 40060053 to 40083206 23153 + lncRNA gene predicted gene, 31930
Tssr97362 10 40072260 to 40072268 8 - TSS region transcription start site region 97362
Tssr97363 10 40072992 to 40072996 4 - TSS region transcription start site region 97363
D10Mit53 10 40081183 to 40081383 200 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 53
Tssr97364 10 40098887 to 40098905 18 - TSS region transcription start site region 97364
Tssr97365 10 40099430 to 40099441 11 - TSS region transcription start site region 97365
Gm25613 10 40109462 to 40109590 128 + snoRNA gene predicted gene, 25613
Tssr97366 10 40128221 to 40128260 39 - TSS region transcription start site region 97366
Tssr97367 10 40128313 to 40128345 32 - TSS region transcription start site region 97367
Tssr97368 10 40128450 to 40128461 11 - TSS region transcription start site region 97368
Tssr97369 10 40128961 to 40129005 44 - TSS region transcription start site region 97369
Tssr97370 10 40129214 to 40129228 14 - TSS region transcription start site region 97370
Tssr97371 10 40129302 to 40129306 4 - TSS region transcription start site region 97371
Tssr97372 10 40129575 to 40129604 29 - TSS region transcription start site region 97372
Tssr97373 10 40134128 to 40134132 4 - TSS region transcription start site region 97373
Tssr97374 10 40135021 to 40135035 14 - TSS region transcription start site region 97374
D10Ertd276e 10 40136326 to 40136542 216 DNA segment DNA segment, Chr 10, ERATO Doi 276, expressed
Cpgi1453 10 40141486 to 40142554 1068 CpG island CpG island 1453
Tssr97375 10 40142247 to 40142260 13 - TSS region transcription start site region 97375
Gm31992 10 40164110 to 40169759 5649 + lincRNA gene predicted gene, 31992
Gm47598 10 40180657 to 40183692 3035 - lincRNA gene predicted gene, 47598
Gm37786 10 40219583 to 40222807 3224 - unclassified gene predicted gene, 37786
Rpf2 10 40223246 to 40247036 23790 - protein coding gene ribosome production factor 2 homolog
Tssr97376 10 40227816 to 40227824 8 - TSS region transcription start site region 97376
Tssr97377 10 40227835 to 40227848 13 - TSS region transcription start site region 97377
Tssr97378 10 40233370 to 40233383 13 - TSS region transcription start site region 97378
Tssr97379 10 40234893 to 40234896 3 - TSS region transcription start site region 97379
Cpgi1454 10 40246625 to 40247273 648 CpG island CpG island 1454
Tssr97380 10 40246991 to 40247045 54 - TSS region transcription start site region 97380
Tssr97381 10 40247117 to 40247135 18 - TSS region transcription start site region 97381
Gtf3c6 10 40247701 to 40257856 10155 - protein coding gene general transcription factor IIIC, polypeptide 6, alpha
Cpgi1455 10 40257388 to 40257950 562 CpG island CpG island 1455
Tssr97382 10 40257648 to 40257687 39 - TSS region transcription start site region 97382
Tssr93011 10 40257708 to 40257735 27 + TSS region transcription start site region 93011
Tssr97383 10 40258082 to 40258092 10 - TSS region transcription start site region 97383
Tssr97384 10 40258112 to 40258132 20 - TSS region transcription start site region 97384
Tssr93012 10 40258463 to 40258470 7 + TSS region transcription start site region 93012
Rnu3a 10 40258576 to 40258679 103 + snRNA gene U3A small nuclear RNA
A930033M14Rik 10 40260934 to 40261333 399 + lincRNA gene RIKEN cDNA A930033M14 gene
Gm47867 10 40280683 to 40282053 1370 - pseudogene predicted gene, 47867
Tssr93013 10 40284019 to 40284024 5 + TSS region transcription start site region 93013
Amd1 10 40287458 to 40302186 14728 - protein coding gene S-adenosylmethionine decarboxylase 1
Cpgi1456 10 40300671 to 40301777 1106 CpG island CpG island 1456
Tssr93014 10 40300942 to 40300987 45 + TSS region transcription start site region 93014
Cpgi1457 10 40302160 to 40302882 722 CpG island CpG island 1457
Tssr97385 10 40302186 to 40302206 20 - TSS region transcription start site region 97385
Gm8948 10 40333951 to 40334320 369 + pseudogene predicted gene 8948
Cdk19os 10 40348508 to 40350103 1595 - antisense lncRNA gene cyclin-dependent kinase 19, opposite strand
Tssr97386 10 40348638 to 40348677 39 - TSS region transcription start site region 97386
Cpgi1458 10 40348758 to 40350245 1487 CpG island CpG island 1458
Tssr93015 10 40349265 to 40349387 122 + TSS region transcription start site region 93015
Cdk19 10 40349308 to 40483818 134510 + protein coding gene cyclin-dependent kinase 19
Tssr93016 10 40349474 to 40349518 44 + TSS region transcription start site region 93016
Tssr97387 10 40350002 to 40350009 7 - TSS region transcription start site region 97387
Tssr97388 10 40350027 to 40350101 74 - TSS region transcription start site region 97388
Tssr97389 10 40350111 to 40350120 9 - TSS region transcription start site region 97389
Gm8067 10 40383963 to 40384524 561 - pseudogene predicted gene 8067
Tssr93017 10 40386384 to 40386391 7 + TSS region transcription start site region 93017
Tssr3183 10 40421891 to 40421936 45 + TSS region transcription start site region 3183
Cpgi1459 10 40425465 to 40425620 155 CpG island CpG island 1459
Tssr93018 10 40426802 to 40426814 12 + TSS region transcription start site region 93018
Tssr93019 10 40433889 to 40433900 11 + TSS region transcription start site region 93019
Tssr93020 10 40444833 to 40444858 25 + TSS region transcription start site region 93020
Gm32234 10 40464674 to 40466627 1953 + protein coding gene predicted gene, 32234
Tssr93021 10 40477680 to 40477727 47 + TSS region transcription start site region 93021
Tssr97390 10 40502861 to 40502905 44 - TSS region transcription start site region 97390
Cpgi1460 10 40536937 to 40537389 452 CpG island CpG island 1460
Gm18671 10 40548892 to 40549574 682 + pseudogene predicted gene, 18671
Gm17795 10 40565916 to 40566672 756 - pseudogene predicted gene, 17795
Cpgi1461 10 40570275 to 40570589 314 CpG island CpG island 1461
Tssr93022 10 40570332 to 40570352 20 + TSS region transcription start site region 93022
Slc22a16 10 40570336 to 40604132 33796 + protein coding gene solute carrier family 22 (organic cation transporter), member 16
Tssr93023 10 40570357 to 40570362 5 + TSS region transcription start site region 93023
Tssr93024 10 40570371 to 40570390 19 + TSS region transcription start site region 93024
Tssr93025 10 40570609 to 40570618 9 + TSS region transcription start site region 93025
Tssr93026 10 40629987 to 40630053 66 + TSS region transcription start site region 93026
Ddo 10 40630011 to 40681847 51836 + protein coding gene D-aspartate oxidase
Tssr93027 10 40630057 to 40630063 6 + TSS region transcription start site region 93027
Tssr3184 10 40645320 to 40645322 2 + TSS region transcription start site region 3184
Tssr93028 10 40673069 to 40673110 41 + TSS region transcription start site region 93028
Cpgi1462 10 40682972 to 40683761 789 CpG island CpG island 1462
Tssr93029 10 40683253 to 40683267 14 + TSS region transcription start site region 93029
Mettl24 10 40683282 to 40811083 127801 + protein coding gene methyltransferase like 24
Tssr93030 10 40703678 to 40703696 18 + TSS region transcription start site region 93030
Cpgi1463 10 40810469 to 40810662 193 CpG island CpG island 1463
Cdc40 10 40831621 to 40883143 51522 - protein coding gene cell division cycle 40
Gm22948 10 40875640 to 40875882 242 - unclassified non-coding RNA gene predicted gene, 22948
Cpgi1464 10 40882739 to 40884730 1991 CpG island CpG island 1464
Tssr97391 10 40883073 to 40883130 57 - TSS region transcription start site region 97391
Tssr93031 10 40883469 to 40883483 14 + TSS region transcription start site region 93031
Tssr93032 10 40883493 to 40883508 15 + TSS region transcription start site region 93032
Tssr93033 10 40883520 to 40883598 78 + TSS region transcription start site region 93033
Wasf1 10 40883534 to 40938569 55035 + protein coding gene WAS protein family, member 1