Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:39046284-39856325

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lama4 10 38965515 to 39110188 144673 + protein coding gene laminin, alpha 4
Fam229b 10 39118804 to 39133914 15110 - protein coding gene family with sequence similarity 229, member B
Tssr97327 10 39122213 to 39122260 47 - TSS region transcription start site region 97327
Tssr97328 10 39122277 to 39122279 2 - TSS region transcription start site region 97328
Cpgi1445 10 39133771 to 39134357 586 CpG island CpG island 1445
Tssr97329 10 39133855 to 39133912 57 - TSS region transcription start site region 97329
Tssr97330 10 39133914 to 39133927 13 - TSS region transcription start site region 97330
Tssr92973 10 39133958 to 39133980 22 + TSS region transcription start site region 92973
Tube1 10 39133978 to 39151058 17080 + protein coding gene epsilon-tubulin 1
Tssr92974 10 39133981 to 39134031 50 + TSS region transcription start site region 92974
Tssr92975 10 39134050 to 39134066 16 + TSS region transcription start site region 92975
Tssr92976 10 39136937 to 39136963 26 + TSS region transcription start site region 92976
Ccn6 10 39150971 to 39163794 12823 - protein coding gene cellular communication network factor 6
Gm40625 10 39153231 to 39156244 3013 + lncRNA gene predicted gene, 40625
D030034A15Rik 10 39169300 to 39173252 3952 - lincRNA gene RIKEN cDNA D030034A15 gene
Cpgi1446 10 39171197 to 39171513 316 CpG island CpG island 1446
Tssr92977 10 39198433 to 39198442 9 + TSS region transcription start site region 92977
Gm6477 10 39198538 to 39199301 763 + pseudogene predicted gene 6477
Gm40626 10 39220646 to 39229693 9047 + lncRNA gene predicted gene, 40626
Tssr97331 10 39227764 to 39227765 1 - TSS region transcription start site region 97331
Gm31562 10 39245046 to 39255100 10054 + lincRNA gene predicted gene, 31562
Gm48486 10 39282341 to 39323417 41076 - lincRNA gene predicted gene, 48486
Gm31616 10 39368342 to 39369631 1289 - lncRNA gene predicted gene, 31616
Tssr92978 10 39369017 to 39369051 34 + TSS region transcription start site region 92978
Cpgi1447 10 39369333 to 39370660 1327 CpG island CpG island 1447
Tssr97332 10 39369560 to 39369595 35 - TSS region transcription start site region 97332
Tssr92979 10 39369728 to 39369739 11 + TSS region transcription start site region 92979
Tssr92980 10 39369750 to 39369804 54 + TSS region transcription start site region 92980
Fyn 10 39369769 to 39565381 195612 + protein coding gene Fyn proto-oncogene
Tssr92981 10 39369915 to 39369926 11 + TSS region transcription start site region 92981
Tssr92982 10 39369933 to 39369945 12 + TSS region transcription start site region 92982
Tssr92983 10 39413526 to 39413536 10 + TSS region transcription start site region 92983
Tssr92984 10 39420048 to 39420074 26 + TSS region transcription start site region 92984
Gm6963 10 39424618 to 39424996 378 - pseudogene predicted gene 6963
Tssr92985 10 39451284 to 39451325 41 + TSS region transcription start site region 92985
Tssr92986 10 39451487 to 39451495 8 + TSS region transcription start site region 92986
Tssr92987 10 39465461 to 39465485 24 + TSS region transcription start site region 92987
Tssr97333 10 39526108 to 39526111 3 - TSS region transcription start site region 97333
Tssr92988 10 39527558 to 39527606 48 + TSS region transcription start site region 92988
Tssr92989 10 39531845 to 39531884 39 + TSS region transcription start site region 92989
Tssr92990 10 39532096 to 39532102 6 + TSS region transcription start site region 92990
Tssr92991 10 39532987 to 39533014 27 + TSS region transcription start site region 92991
Tssr92992 10 39533136 to 39533147 11 + TSS region transcription start site region 92992
Tssr3182 10 39533260 to 39533273 13 + TSS region transcription start site region 3182
Tssr97334 10 39534760 to 39534775 15 - TSS region transcription start site region 97334
Tssr92993 10 39550988 to 39550994 6 + TSS region transcription start site region 92993
Tssr92994 10 39551457 to 39551484 27 + TSS region transcription start site region 92994
Gm16364 10 39556070 to 39558769 2699 - antisense lncRNA gene predicted gene 16364
Tssr92995 10 39558167 to 39558179 12 + TSS region transcription start site region 92995
Gm40627 10 39590365 to 39601694 11329 + lncRNA gene predicted gene, 40627
Traf3ip2 10 39612934 to 39655307 42373 + protein coding gene TRAF3 interacting protein 2
Tssr92996 10 39613135 to 39613154 19 + TSS region transcription start site region 92996
Tssr92997 10 39613187 to 39613249 62 + TSS region transcription start site region 92997
Tssr97335 10 39613635 to 39613686 51 - TSS region transcription start site region 97335
Tssr97336 10 39618577 to 39618595 18 - TSS region transcription start site region 97336
E130307A14Rik 10 39621412 to 39732007 110595 - antisense lncRNA gene RIKEN cDNA E130307A14 gene
Tssr97337 10 39638762 to 39638765 3 - TSS region transcription start site region 97337
Tssr92998 10 39641111 to 39641124 13 + TSS region transcription start site region 92998
Tssr92999 10 39641155 to 39641168 13 + TSS region transcription start site region 92999
2900078I11Rik 10 39657428 to 39658426 998 - unclassified gene RIKEN cDNA 2900078I11 gene
Gm8899 10 39662089 to 39663420 1331 + pseudogene predicted gene 8899
Tssr97338 10 39692316 to 39692319 3 - TSS region transcription start site region 97338
Tssr97339 10 39729839 to 39729844 5 - TSS region transcription start site region 97339
Cpgi1448 10 39731055 to 39733312 2257 CpG island CpG island 1448
Tssr97340 10 39731802 to 39731882 80 - TSS region transcription start site region 97340
Tssr97341 10 39731918 to 39731929 11 - TSS region transcription start site region 97341
Tssr97342 10 39731974 to 39732011 37 - TSS region transcription start site region 97342
Tssr93000 10 39732099 to 39732140 41 + TSS region transcription start site region 93000
Rev3l 10 39732118 to 39875211 143093 + protein coding gene REV3 like, DNA directed polymerase zeta catalytic subunit
Tssr93001 10 39732161 to 39732176 15 + TSS region transcription start site region 93001
Tssr93002 10 39732194 to 39732203 9 + TSS region transcription start site region 93002
Tssr93003 10 39732383 to 39732450 67 + TSS region transcription start site region 93003
Tssr93004 10 39736849 to 39736857 8 + TSS region transcription start site region 93004
Gm22105 10 39749317 to 39749432 115 + snRNA gene predicted gene, 22105
Gm16210 10 39752259 to 39752868 609 - pseudogene predicted gene 16210
Tssr97343 10 39752901 to 39752917 16 - TSS region transcription start site region 97343
Tssr93005 10 39777587 to 39777590 3 + TSS region transcription start site region 93005
Tssr93006 10 39794922 to 39794932 10 + TSS region transcription start site region 93006
Tssr93007 10 39801359 to 39801362 3 + TSS region transcription start site region 93007
Tssr93008 10 39822566 to 39822581 15 + TSS region transcription start site region 93008
Tssr93009 10 39823933 to 39823950 17 + TSS region transcription start site region 93009
A130048E20Rik 10 39856217 to 39858724 2507 unclassified gene RIKEN cDNA A130048E20 gene