Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:3866316-4346327

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plekhg1 10 3740364 to 3967303 226939 + protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 1
Gm16149 10 3869299 to 3869607 308 - pseudogene predicted gene 16149
Tssr92229 10 3872780 to 3872788 8 + TSS region transcription start site region 92229
Tssr92230 10 3872806 to 3872818 12 + TSS region transcription start site region 92230
Tssr92231 10 3874659 to 3874668 9 + TSS region transcription start site region 92231
D10Mit166 10 3887960 to 3888068 108 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 166
Gm23023 10 3934769 to 3934877 108 - rRNA gene predicted gene, 23023
Gm16148 10 3946191 to 3947066 875 - pseudogene predicted gene 16148
Cpgi1269 10 3972917 to 3974077 1160 CpG island CpG island 1269
Tssr92232 10 3973086 to 3973157 71 + TSS region transcription start site region 92232
Mthfd1l 10 3973118 to 4167081 193963 + protein coding gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
Tssr92233 10 3973166 to 3973178 12 + TSS region transcription start site region 92233
Tssr92234 10 3973187 to 3973208 21 + TSS region transcription start site region 92234
Tssr92235 10 3973215 to 3973245 30 + TSS region transcription start site region 92235
Gm16074 10 3992371 to 3992814 443 + pseudogene predicted gene 16074
Gm40591 10 4075497 to 4083812 8315 - lncRNA gene predicted gene, 40591
Tssr92236 10 4089944 to 4089950 6 + TSS region transcription start site region 92236
Gm25515 10 4104313 to 4104469 156 + snRNA gene predicted gene, 25515
Tssr92237 10 4106316 to 4106327 11 + TSS region transcription start site region 92237
Tssr3112 10 4156355 to 4156358 3 + TSS region transcription start site region 3112
Gm25369 10 4169887 to 4170018 131 + snoRNA gene predicted gene, 25369
Gm30570 10 4206426 to 4213114 6688 - lincRNA gene predicted gene, 30570
Tssr92238 10 4242467 to 4242498 31 + TSS region transcription start site region 92238
Tssr92239 10 4243906 to 4243912 6 + TSS region transcription start site region 92239
Cpgi1268 10 4265577 to 4265829 252 CpG island CpG island 1268
Tssr3113 10 4266117 to 4266135 18 + TSS region transcription start site region 3113
Cpgi1267 10 4266302 to 4267142 840 CpG island CpG island 1267
Tssr92240 10 4266323 to 4266341 18 + TSS region transcription start site region 92240
Tssr92241 10 4266353 to 4266374 21 + TSS region transcription start site region 92241
Akap12 10 4266380 to 4359470 93090 + protein coding gene A kinase (PRKA) anchor protein (gravin) 12
Tssr3114 10 4266530 to 4266531 1 + TSS region transcription start site region 3114
Tssr92242 10 4268475 to 4268484 9 + TSS region transcription start site region 92242
Gm40592 10 4277338 to 4310737 33399 - lncRNA gene predicted gene, 40592
Tssr92243 10 4314612 to 4314624 12 + TSS region transcription start site region 92243
Tssr92244 10 4320699 to 4320703 4 + TSS region transcription start site region 92244
Tssr92245 10 4334536 to 4334553 17 + TSS region transcription start site region 92245
Tssr92246 10 4339918 to 4339921 3 + TSS region transcription start site region 92246
Tssr92247 10 4341197 to 4341199 2 + TSS region transcription start site region 92247
D10Mit1000 10 4344823 to 4344913 90 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 1000