Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:36683359-39743426

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177 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hs3st5 10 36506814 to 36834397 327583 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 5
Tssr97279 10 36750191 to 36750196 5 - TSS region transcription start site region 97279
Gm22554 10 36775785 to 36775931 146 - snoRNA gene predicted gene, 22554
D10Mit45 10 36910675 to 36910852 177 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 45
Cpgi1438 10 36973966 to 36975408 1442 CpG island CpG island 1438
Tssr3177 10 36974520 to 36974531 11 + TSS region transcription start site region 3177
Tssr92955 10 36974536 to 36974556 20 + TSS region transcription start site region 92955
Hdac2 10 36974544 to 37001889 27345 + protein coding gene histone deacetylase 2
Tssr92956 10 36974558 to 36974579 21 + TSS region transcription start site region 92956
Tssr92957 10 36974721 to 36974751 30 + TSS region transcription start site region 92957
Tssr92958 10 36975072 to 36975120 48 + TSS region transcription start site region 92958
Tssr92959 10 36997043 to 36997061 18 + TSS region transcription start site region 92959
Tssr3178 10 37075095 to 37075097 2 + TSS region transcription start site region 3178
Tssr92960 10 37078624 to 37078627 3 + TSS region transcription start site region 92960
Gm38231 10 37129744 to 37130090 346 + unclassified gene predicted gene, 38231
Marcks 10 37133375 to 37138920 5545 - protein coding gene myristoylated alanine rich protein kinase C substrate
Tssr97280 10 37135244 to 37135418 174 - TSS region transcription start site region 97280
Tssr97281 10 37135496 to 37135538 42 - TSS region transcription start site region 97281
Tssr97282 10 37135602 to 37135607 5 - TSS region transcription start site region 97282
Tssr3179 10 37135641 to 37135646 5 - TSS region transcription start site region 3179
Tssr97283 10 37135647 to 37135653 6 - TSS region transcription start site region 97283
Tssr97284 10 37135668 to 37135676 8 - TSS region transcription start site region 97284
Tssr97285 10 37135680 to 37135690 10 - TSS region transcription start site region 97285
Tssr97286 10 37135807 to 37135822 15 - TSS region transcription start site region 97286
Tssr97287 10 37135856 to 37135874 18 - TSS region transcription start site region 97287
Cpgi1439 10 37135867 to 37137842 1975 CpG island CpG island 1439
Tssr97288 10 37135928 to 37135942 14 - TSS region transcription start site region 97288
Tssr97289 10 37135975 to 37135987 12 - TSS region transcription start site region 97289
Tssr97290 10 37136003 to 37136011 8 - TSS region transcription start site region 97290
Tssr97291 10 37136015 to 37136052 37 - TSS region transcription start site region 97291
Tssr92961 10 37136015 to 37136049 34 + TSS region transcription start site region 92961
Tssr97292 10 37136055 to 37136060 5 - TSS region transcription start site region 97292
Tssr97293 10 37136063 to 37136077 14 - TSS region transcription start site region 97293
Tssr97294 10 37136092 to 37136101 9 - TSS region transcription start site region 97294
Tssr97295 10 37136106 to 37136120 14 - TSS region transcription start site region 97295
Tssr3180 10 37136129 to 37136136 7 - TSS region transcription start site region 3180
Tssr97296 10 37136140 to 37136183 43 - TSS region transcription start site region 97296
Tssr97297 10 37136192 to 37136219 27 - TSS region transcription start site region 97297
Tssr97298 10 37136227 to 37136289 62 - TSS region transcription start site region 97298
Tssr97299 10 37136585 to 37136600 15 - TSS region transcription start site region 97299
Tssr97300 10 37136625 to 37136649 24 - TSS region transcription start site region 97300
Tssr97301 10 37136796 to 37136808 12 - TSS region transcription start site region 97301
Tssr97302 10 37136948 to 37136972 24 - TSS region transcription start site region 97302
Tssr97303 10 37137021 to 37137047 26 - TSS region transcription start site region 97303
Tssr97304 10 37137274 to 37137293 19 - TSS region transcription start site region 97304
Tssr97305 10 37137312 to 37137335 23 - TSS region transcription start site region 97305
Tssr92962 10 37137526 to 37137530 4 + TSS region transcription start site region 92962
Cpgi1440 10 37138363 to 37139047 684 CpG island CpG island 1440
Tssr97306 10 37138496 to 37138502 6 - TSS region transcription start site region 97306
Tssr97307 10 37138545 to 37138552 7 - TSS region transcription start site region 97307
Tssr97308 10 37138553 to 37138572 19 - TSS region transcription start site region 97308
Tssr97309 10 37138573 to 37138574 1 - TSS region transcription start site region 97309
Tssr97310 10 37138583 to 37138588 5 - TSS region transcription start site region 97310
Tssr97311 10 37138602 to 37138636 34 - TSS region transcription start site region 97311
Tssr97312 10 37138647 to 37138660 13 - TSS region transcription start site region 97312
Tssr97313 10 37138666 to 37138677 11 - TSS region transcription start site region 97313
Tssr97314 10 37138757 to 37138761 4 - TSS region transcription start site region 97314
Tssr97315 10 37138780 to 37138794 14 - TSS region transcription start site region 97315
Tssr97316 10 37138800 to 37138814 14 - TSS region transcription start site region 97316
Tssr97317 10 37138819 to 37138830 11 - TSS region transcription start site region 97317
Tssr97318 10 37138863 to 37138937 74 - TSS region transcription start site region 97318
Tssr92963 10 37139525 to 37139540 15 + TSS region transcription start site region 92963
Cpgi1441 10 37140272 to 37140552 280 CpG island CpG island 1441
Cpgi1442 10 37140622 to 37141191 569 CpG island CpG island 1442
Tssr97319 10 37140733 to 37140761 28 - TSS region transcription start site region 97319
Tssr97320 10 37140802 to 37140831 29 - TSS region transcription start site region 97320
Tssr97321 10 37140937 to 37140981 44 - TSS region transcription start site region 97321
5930403N24Rik 10 37141078 to 37151317 10239 + lncRNA gene RIKEN cDNA 5930403N24 gene
Tssr97322 10 37141275 to 37141289 14 - TSS region transcription start site region 97322
Tssr97323 10 37141305 to 37141328 23 - TSS region transcription start site region 97323
Tssr97324 10 37160496 to 37160503 7 - TSS region transcription start site region 97324
Tssr97325 10 37233311 to 37233321 10 - TSS region transcription start site region 97325
Tssr92964 10 37239043 to 37239046 3 + TSS region transcription start site region 92964
4930543K20Rik 10 37263394 to 37263748 354 - lincRNA gene RIKEN cDNA 4930543K20 gene
Tssr92965 10 37315385 to 37315390 5 + TSS region transcription start site region 92965
Gm26535 10 37319505 to 37338948 19443 + lincRNA gene predicted gene, 26535
Tssr97326 10 37321318 to 37321338 20 - TSS region transcription start site region 97326
Gm31202 10 37360698 to 37364361 3663 - lncRNA gene predicted gene, 31202
Gm31330 10 37430435 to 37436975 6540 - lncRNA gene predicted gene, 31330
Gm48172 10 37452452 to 37452680 228 - pseudogene predicted gene, 48172
Gm24710 10 37931680 to 37931780 100 + miRNA gene predicted gene, 24710
Gm46220 10 38059341 to 38063357 4016 + lncRNA gene predicted gene, 46220
2210408O09Rik 10 38059545 to 38063355 3810 unclassified non-coding RNA gene RIKEN cDNA 2210408O09 gene
Gm31378 10 38116245 to 38122061 5816 - lincRNA gene predicted gene, 31378
Tssr3181 10 38169832 to 38169834 2 + TSS region transcription start site region 3181
4930591E09Rik 10 38175780 to 38181903 6123 + lincRNA gene RIKEN cDNA 4930591E09 gene
Gm24889 10 38179453 to 38179584 131 + snoRNA gene predicted gene, 24889
Gm24297 10 38213359 to 38213426 67 + snoRNA gene predicted gene, 24297
Gm48173 10 38216579 to 38216872 293 - pseudogene predicted gene, 48173
Gm48197 10 38295074 to 38313846 18772 - lincRNA gene predicted gene, 48197
Gm40624 10 38354784 to 38382402 27618 + lncRNA gene predicted gene, 40624
Gm48198 10 38433979 to 38434135 156 - pseudogene predicted gene, 48198
Gm22911 10 38615375 to 38615481 106 - snRNA gene predicted gene, 22911
Rfpl4b 10 38820541 to 38821779 1238 - protein coding gene ret finger protein-like 4B
Gm17779 10 38928289 to 38928682 393 + pseudogene predicted gene, 17779
Tssr92966 10 38965192 to 38965201 9 + TSS region transcription start site region 92966
Cpgi1443 10 38965439 to 38966265 826 CpG island CpG island 1443
Lama4 10 38965515 to 39110188 144673 + protein coding gene laminin, alpha 4
Tssr92967 10 38965547 to 38965558 11 + TSS region transcription start site region 92967
Tssr92968 10 38965559 to 38965576 17 + TSS region transcription start site region 92968
Tssr92969 10 38965589 to 38965598 9 + TSS region transcription start site region 92969
Tssr92970 10 38965616 to 38965630 14 + TSS region transcription start site region 92970
Tssr92971 10 38966920 to 38966951 31 + TSS region transcription start site region 92971
Cpgi1444 10 39030442 to 39030600 158 CpG island CpG island 1444
Tssr92972 10 39043610 to 39043613 3 + TSS region transcription start site region 92972
Fam229b 10 39118804 to 39133914 15110 - protein coding gene family with sequence similarity 229, member B
Tssr97327 10 39122213 to 39122260 47 - TSS region transcription start site region 97327
Tssr97328 10 39122277 to 39122279 2 - TSS region transcription start site region 97328
Cpgi1445 10 39133771 to 39134357 586 CpG island CpG island 1445
Tssr97329 10 39133855 to 39133912 57 - TSS region transcription start site region 97329
Tssr97330 10 39133914 to 39133927 13 - TSS region transcription start site region 97330
Tssr92973 10 39133958 to 39133980 22 + TSS region transcription start site region 92973
Tube1 10 39133978 to 39151058 17080 + protein coding gene epsilon-tubulin 1
Tssr92974 10 39133981 to 39134031 50 + TSS region transcription start site region 92974
Tssr92975 10 39134050 to 39134066 16 + TSS region transcription start site region 92975
Tssr92976 10 39136937 to 39136963 26 + TSS region transcription start site region 92976
Ccn6 10 39150971 to 39163794 12823 - protein coding gene cellular communication network factor 6
Gm40625 10 39153231 to 39156244 3013 + lncRNA gene predicted gene, 40625
D030034A15Rik 10 39169300 to 39173252 3952 - lincRNA gene RIKEN cDNA D030034A15 gene
Cpgi1446 10 39171197 to 39171513 316 CpG island CpG island 1446
Tssr92977 10 39198433 to 39198442 9 + TSS region transcription start site region 92977
Gm6477 10 39198538 to 39199301 763 + pseudogene predicted gene 6477
Gm40626 10 39220646 to 39229693 9047 + lncRNA gene predicted gene, 40626
Tssr97331 10 39227764 to 39227765 1 - TSS region transcription start site region 97331
Gm31562 10 39245046 to 39255100 10054 + lincRNA gene predicted gene, 31562
Gm48486 10 39282341 to 39323417 41076 - lincRNA gene predicted gene, 48486
Gm31616 10 39368342 to 39369631 1289 - lncRNA gene predicted gene, 31616
Tssr92978 10 39369017 to 39369051 34 + TSS region transcription start site region 92978
Cpgi1447 10 39369333 to 39370660 1327 CpG island CpG island 1447
Tssr97332 10 39369560 to 39369595 35 - TSS region transcription start site region 97332
Tssr92979 10 39369728 to 39369739 11 + TSS region transcription start site region 92979
Tssr92980 10 39369750 to 39369804 54 + TSS region transcription start site region 92980
Fyn 10 39369769 to 39565381 195612 + protein coding gene Fyn proto-oncogene
Tssr92981 10 39369915 to 39369926 11 + TSS region transcription start site region 92981
Tssr92982 10 39369933 to 39369945 12 + TSS region transcription start site region 92982
Tssr92983 10 39413526 to 39413536 10 + TSS region transcription start site region 92983
Tssr92984 10 39420048 to 39420074 26 + TSS region transcription start site region 92984
Gm6963 10 39424618 to 39424996 378 - pseudogene predicted gene 6963
Tssr92985 10 39451284 to 39451325 41 + TSS region transcription start site region 92985
Tssr92986 10 39451487 to 39451495 8 + TSS region transcription start site region 92986
Tssr92987 10 39465461 to 39465485 24 + TSS region transcription start site region 92987
Tssr97333 10 39526108 to 39526111 3 - TSS region transcription start site region 97333
Tssr92988 10 39527558 to 39527606 48 + TSS region transcription start site region 92988
Tssr92989 10 39531845 to 39531884 39 + TSS region transcription start site region 92989
Tssr92990 10 39532096 to 39532102 6 + TSS region transcription start site region 92990
Tssr92991 10 39532987 to 39533014 27 + TSS region transcription start site region 92991
Tssr92992 10 39533136 to 39533147 11 + TSS region transcription start site region 92992
Tssr3182 10 39533260 to 39533273 13 + TSS region transcription start site region 3182
Tssr97334 10 39534760 to 39534775 15 - TSS region transcription start site region 97334
Tssr92993 10 39550988 to 39550994 6 + TSS region transcription start site region 92993
Tssr92994 10 39551457 to 39551484 27 + TSS region transcription start site region 92994
Gm16364 10 39556070 to 39558769 2699 - antisense lncRNA gene predicted gene 16364
Tssr92995 10 39558167 to 39558179 12 + TSS region transcription start site region 92995
Gm40627 10 39590365 to 39601694 11329 + lncRNA gene predicted gene, 40627
Traf3ip2 10 39612934 to 39655307 42373 + protein coding gene TRAF3 interacting protein 2
Tssr92996 10 39613135 to 39613154 19 + TSS region transcription start site region 92996
Tssr92997 10 39613187 to 39613249 62 + TSS region transcription start site region 92997
Tssr97335 10 39613635 to 39613686 51 - TSS region transcription start site region 97335
Tssr97336 10 39618577 to 39618595 18 - TSS region transcription start site region 97336
E130307A14Rik 10 39621412 to 39732007 110595 - antisense lncRNA gene RIKEN cDNA E130307A14 gene
Tssr97337 10 39638762 to 39638765 3 - TSS region transcription start site region 97337
Tssr92998 10 39641111 to 39641124 13 + TSS region transcription start site region 92998
Tssr92999 10 39641155 to 39641168 13 + TSS region transcription start site region 92999
2900078I11Rik 10 39657428 to 39658426 998 - unclassified gene RIKEN cDNA 2900078I11 gene
Gm8899 10 39662089 to 39663420 1331 + pseudogene predicted gene 8899
Tssr97338 10 39692316 to 39692319 3 - TSS region transcription start site region 97338
Tssr97339 10 39729839 to 39729844 5 - TSS region transcription start site region 97339
Cpgi1448 10 39731055 to 39733312 2257 CpG island CpG island 1448
Tssr97340 10 39731802 to 39731882 80 - TSS region transcription start site region 97340
Tssr97341 10 39731918 to 39731929 11 - TSS region transcription start site region 97341
Tssr97342 10 39731974 to 39732011 37 - TSS region transcription start site region 97342
Tssr93000 10 39732099 to 39732140 41 + TSS region transcription start site region 93000
Rev3l 10 39732118 to 39875211 143093 + protein coding gene REV3 like, DNA directed polymerase zeta catalytic subunit
Tssr93001 10 39732161 to 39732176 15 + TSS region transcription start site region 93001
Tssr93002 10 39732194 to 39732203 9 + TSS region transcription start site region 93002
Tssr93003 10 39732383 to 39732450 67 + TSS region transcription start site region 93003
Tssr93004 10 39736849 to 39736857 8 + TSS region transcription start site region 93004