Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:34260353-36710363

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi1434 10 34281894 to 34282927 1033 CpG island CpG island 1434
Tssr92923 10 34282179 to 34282193 14 + TSS region transcription start site region 92923
Tspyl1 10 34282190 to 34284885 2695 + protein coding gene testis-specific protein, Y-encoded-like 1
Tssr92924 10 34282199 to 34282278 79 + TSS region transcription start site region 92924
Tssr92925 10 34283495 to 34283510 15 + TSS region transcription start site region 92925
Tssr92926 10 34283621 to 34283644 23 + TSS region transcription start site region 92926
Tssr92927 10 34283873 to 34283877 4 + TSS region transcription start site region 92927
Tssr92928 10 34284905 to 34284911 6 + TSS region transcription start site region 92928
Gm47508 10 34293558 to 34296573 3015 + unclassified gene predicted gene, 47508
Gm47512 10 34295912 to 34298907 2995 - antisense lncRNA gene predicted gene, 47512
Cpgi1435 10 34297327 to 34298150 823 CpG island CpG island 1435
Tssr92929 10 34297432 to 34297513 81 + TSS region transcription start site region 92929
Tspyl4 10 34297442 to 34301320 3878 + protein coding gene TSPY-like 4
Tssr92930 10 34297562 to 34297577 15 + TSS region transcription start site region 92930
Tssr92931 10 34299064 to 34299068 4 + TSS region transcription start site region 92931
Tssr92932 10 34300841 to 34300858 17 + TSS region transcription start site region 92932
Nt5dc1 10 34303609 to 34418589 114980 - protein coding gene 5'-nucleotidase domain containing 1
Tssr97274 10 34388810 to 34388814 4 - TSS region transcription start site region 97274
Tssr92933 10 34389974 to 34389990 16 + TSS region transcription start site region 92933
Col10a1 10 34389981 to 34397085 7104 + protein coding gene collagen, type X, alpha 1
Cpgi1436 10 34418192 to 34418771 579 CpG island CpG island 1436
Tssr97275 10 34418465 to 34418567 102 - TSS region transcription start site region 97275
Tssr92934 10 34456487 to 34456488 1 + TSS region transcription start site region 92934
Frk 10 34483400 to 34611232 127832 + protein coding gene fyn-related kinase
Tssr92935 10 34483415 to 34483445 30 + TSS region transcription start site region 92935
Tssr92936 10 34483450 to 34483479 29 + TSS region transcription start site region 92936
Tssr92937 10 34483517 to 34483533 16 + TSS region transcription start site region 92937
Tssr92938 10 34483546 to 34483599 53 + TSS region transcription start site region 92938
Tssr92939 10 34483630 to 34483644 14 + TSS region transcription start site region 92939
Tssr92940 10 34484846 to 34484850 4 + TSS region transcription start site region 92940
Gm19162 10 34646912 to 34647634 722 - pseudogene predicted gene, 19162
Tssr3175 10 34673597 to 34673603 6 + TSS region transcription start site region 3175
Tssr97276 10 34713524 to 34713526 2 - TSS region transcription start site region 97276
Tssr92941 10 34787754 to 34787757 3 + TSS region transcription start site region 92941
Gm18252 10 34881457 to 34882160 703 + pseudogene predicted gene, 18252
Tssr97277 10 34882406 to 34882410 4 - TSS region transcription start site region 97277
Tssr92942 10 34898222 to 34898229 7 + TSS region transcription start site region 92942
Gm8834 10 34898256 to 34898820 564 + pseudogene predicted gene 8834
Tssr92943 10 34898697 to 34898710 13 + TSS region transcription start site region 92943
Tssr92944 10 34898777 to 34898784 7 + TSS region transcription start site region 92944
Tssr92945 10 35102619 to 35102620 1 + TSS region transcription start site region 92945
Gm26341 10 35112198 to 35112331 133 + snoRNA gene predicted gene, 26341
Gm47044 10 35142313 to 35142578 265 + pseudogene predicted gene, 47044
Gm18729 10 35242123 to 35242743 620 - pseudogene predicted gene, 18729
1700054O05Rik 10 35478827 to 35485396 6569 - lincRNA gene RIKEN cDNA 1700054O05 gene
Tssr97278 10 35485353 to 35485363 10 - TSS region transcription start site region 97278
Amd2 10 35708691 to 35711891 3200 - protein coding gene S-adenosylmethionine decarboxylase 2
Gm49446 10 35838490 to 35854475 15985 + lincRNA gene predicted gene, 49446
Gm31016 10 35838517 to 35846401 7884 + lncRNA gene predicted gene, 31016
Gm40623 10 35846471 to 35854217 7746 + lncRNA gene predicted gene, 40623
Gm47046 10 35849310 to 35859450 10140 - pseudogene predicted gene, 47046
Tssr3176 10 35911189 to 35911192 3 + TSS region transcription start site region 3176
Chol16 10 36039047 to 36039047 0 QTL cholesterol 16
Gm47048 10 36095876 to 36096495 619 + pseudogene predicted gene, 47048
Tssr92946 10 36148965 to 36148969 4 + TSS region transcription start site region 92946
Gm47049 10 36391592 to 36396928 5336 + lincRNA gene predicted gene, 47049
D10Mit156 10 36455282 to 36455410 128 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 156
Cpgi1437 10 36506535 to 36507762 1227 CpG island CpG island 1437
Hs3st5 10 36506814 to 36834397 327583 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 5
Tssr92947 10 36506834 to 36506846 12 + TSS region transcription start site region 92947
Tssr92948 10 36506907 to 36506921 14 + TSS region transcription start site region 92948
Tssr92949 10 36506950 to 36506997 47 + TSS region transcription start site region 92949
Tssr92950 10 36507013 to 36507024 11 + TSS region transcription start site region 92950
Tssr92951 10 36525387 to 36525392 5 + TSS region transcription start site region 92951
Gm47054 10 36611900 to 36614074 2174 - unclassified gene predicted gene, 47054
Tssr92952 10 36628235 to 36628248 13 + TSS region transcription start site region 92952
Tssr92953 10 36628263 to 36628280 17 + TSS region transcription start site region 92953
Tssr92954 10 36641083 to 36641087 4 + TSS region transcription start site region 92954