Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:34106907-38906921

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trappc3l 10 34037597 to 34109815 72218 + protein coding gene trafficking protein particle complex 3 like
Calhm6 10 34126067 to 34127972 1905 - protein coding gene calcium homeostasis modulator family member 6
Cpgi1432 10 34127324 to 34127994 670 CpG island CpG island 1432
Tssr97257 10 34127919 to 34127930 11 - TSS region transcription start site region 97257
Tssr97258 10 34127955 to 34127980 25 - TSS region transcription start site region 97258
Tssr97259 10 34127997 to 34128014 17 - TSS region transcription start site region 97259
Dse 10 34151393 to 34207715 56322 - protein coding gene dermatan sulfate epimerase
Tssr97260 10 34151912 to 34151916 4 - TSS region transcription start site region 97260
D10Mit252 10 34160550 to 34160821 271 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 252
Gm47445 10 34178235 to 34179928 1693 - unclassified gene predicted gene, 47445
Tssr97261 10 34178576 to 34178581 5 - TSS region transcription start site region 97261
Tssr97262 10 34186485 to 34186496 11 - TSS region transcription start site region 97262
Tssr97263 10 34197763 to 34197768 5 - TSS region transcription start site region 97263
Cpgi1433 10 34206556 to 34207547 991 CpG island CpG island 1433
Tssr97264 10 34207177 to 34207200 23 - TSS region transcription start site region 97264
Tssr97265 10 34207201 to 34207265 64 - TSS region transcription start site region 97265
Tssr97266 10 34207423 to 34207480 57 - TSS region transcription start site region 97266
Tssr97267 10 34207486 to 34207511 25 - TSS region transcription start site region 97267
Tssr97268 10 34207574 to 34207589 15 - TSS region transcription start site region 97268
Tssr97269 10 34207827 to 34207849 22 - TSS region transcription start site region 97269
Tssr97270 10 34208251 to 34208276 25 - TSS region transcription start site region 97270
Tssr97271 10 34208294 to 34208321 27 - TSS region transcription start site region 97271
Gm18346 10 34213754 to 34214078 324 - pseudogene predicted gene, 18346
Gm26564 10 34230907 to 34233531 2624 - lincRNA gene predicted gene, 26564
Tssr97272 10 34233559 to 34233573 14 - TSS region transcription start site region 97272
Tssr97273 10 34233593 to 34233596 3 - TSS region transcription start site region 97273
Gm47485 10 34242813 to 34245589 2776 - unclassified gene predicted gene, 47485
Cpgi1434 10 34281894 to 34282927 1033 CpG island CpG island 1434
Tssr92923 10 34282179 to 34282193 14 + TSS region transcription start site region 92923
Tspyl1 10 34282190 to 34284885 2695 + protein coding gene testis-specific protein, Y-encoded-like 1
Tssr92924 10 34282199 to 34282278 79 + TSS region transcription start site region 92924
Tssr92925 10 34283495 to 34283510 15 + TSS region transcription start site region 92925
Tssr92926 10 34283621 to 34283644 23 + TSS region transcription start site region 92926
Tssr92927 10 34283873 to 34283877 4 + TSS region transcription start site region 92927
Tssr92928 10 34284905 to 34284911 6 + TSS region transcription start site region 92928
Gm47508 10 34293558 to 34296573 3015 + unclassified gene predicted gene, 47508
Gm47512 10 34295912 to 34298907 2995 - antisense lncRNA gene predicted gene, 47512
Cpgi1435 10 34297327 to 34298150 823 CpG island CpG island 1435
Tssr92929 10 34297432 to 34297513 81 + TSS region transcription start site region 92929
Tspyl4 10 34297442 to 34301320 3878 + protein coding gene TSPY-like 4
Tssr92930 10 34297562 to 34297577 15 + TSS region transcription start site region 92930
Tssr92931 10 34299064 to 34299068 4 + TSS region transcription start site region 92931
Tssr92932 10 34300841 to 34300858 17 + TSS region transcription start site region 92932
Nt5dc1 10 34303609 to 34418589 114980 - protein coding gene 5'-nucleotidase domain containing 1
Tssr97274 10 34388810 to 34388814 4 - TSS region transcription start site region 97274
Tssr92933 10 34389974 to 34389990 16 + TSS region transcription start site region 92933
Col10a1 10 34389981 to 34397085 7104 + protein coding gene collagen, type X, alpha 1
Cpgi1436 10 34418192 to 34418771 579 CpG island CpG island 1436
Tssr97275 10 34418465 to 34418567 102 - TSS region transcription start site region 97275
Tssr92934 10 34456487 to 34456488 1 + TSS region transcription start site region 92934
Frk 10 34483400 to 34611232 127832 + protein coding gene fyn-related kinase
Tssr92935 10 34483415 to 34483445 30 + TSS region transcription start site region 92935
Tssr92936 10 34483450 to 34483479 29 + TSS region transcription start site region 92936
Tssr92937 10 34483517 to 34483533 16 + TSS region transcription start site region 92937
Tssr92938 10 34483546 to 34483599 53 + TSS region transcription start site region 92938
Tssr92939 10 34483630 to 34483644 14 + TSS region transcription start site region 92939
Tssr92940 10 34484846 to 34484850 4 + TSS region transcription start site region 92940
Gm19162 10 34646912 to 34647634 722 - pseudogene predicted gene, 19162
Tssr3175 10 34673597 to 34673603 6 + TSS region transcription start site region 3175
Tssr97276 10 34713524 to 34713526 2 - TSS region transcription start site region 97276
Tssr92941 10 34787754 to 34787757 3 + TSS region transcription start site region 92941
Gm18252 10 34881457 to 34882160 703 + pseudogene predicted gene, 18252
Tssr97277 10 34882406 to 34882410 4 - TSS region transcription start site region 97277
Tssr92942 10 34898222 to 34898229 7 + TSS region transcription start site region 92942
Gm8834 10 34898256 to 34898820 564 + pseudogene predicted gene 8834
Tssr92943 10 34898697 to 34898710 13 + TSS region transcription start site region 92943
Tssr92944 10 34898777 to 34898784 7 + TSS region transcription start site region 92944
Tssr92945 10 35102619 to 35102620 1 + TSS region transcription start site region 92945
Gm26341 10 35112198 to 35112331 133 + snoRNA gene predicted gene, 26341
Gm47044 10 35142313 to 35142578 265 + pseudogene predicted gene, 47044
Gm18729 10 35242123 to 35242743 620 - pseudogene predicted gene, 18729
1700054O05Rik 10 35478827 to 35485396 6569 - lincRNA gene RIKEN cDNA 1700054O05 gene
Tssr97278 10 35485353 to 35485363 10 - TSS region transcription start site region 97278
Amd2 10 35708691 to 35711891 3200 - protein coding gene S-adenosylmethionine decarboxylase 2
Gm49446 10 35838490 to 35854475 15985 + lincRNA gene predicted gene, 49446
Gm31016 10 35838517 to 35846401 7884 + lncRNA gene predicted gene, 31016
Gm40623 10 35846471 to 35854217 7746 + lncRNA gene predicted gene, 40623
Gm47046 10 35849310 to 35859450 10140 - pseudogene predicted gene, 47046
Tssr3176 10 35911189 to 35911192 3 + TSS region transcription start site region 3176
Chol16 10 36039047 to 36039047 0 QTL cholesterol 16
Gm47048 10 36095876 to 36096495 619 + pseudogene predicted gene, 47048
Tssr92946 10 36148965 to 36148969 4 + TSS region transcription start site region 92946
Gm47049 10 36391592 to 36396928 5336 + lincRNA gene predicted gene, 47049
D10Mit156 10 36455282 to 36455410 128 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 156
Cpgi1437 10 36506535 to 36507762 1227 CpG island CpG island 1437
Hs3st5 10 36506814 to 36834397 327583 + protein coding gene heparan sulfate (glucosamine) 3-O-sulfotransferase 5
Tssr92947 10 36506834 to 36506846 12 + TSS region transcription start site region 92947
Tssr92948 10 36506907 to 36506921 14 + TSS region transcription start site region 92948
Tssr92949 10 36506950 to 36506997 47 + TSS region transcription start site region 92949
Tssr92950 10 36507013 to 36507024 11 + TSS region transcription start site region 92950
Tssr92951 10 36525387 to 36525392 5 + TSS region transcription start site region 92951
Gm47054 10 36611900 to 36614074 2174 - unclassified gene predicted gene, 47054
Tssr92952 10 36628235 to 36628248 13 + TSS region transcription start site region 92952
Tssr92953 10 36628263 to 36628280 17 + TSS region transcription start site region 92953
Tssr92954 10 36641083 to 36641087 4 + TSS region transcription start site region 92954
Tssr97279 10 36750191 to 36750196 5 - TSS region transcription start site region 97279
Gm22554 10 36775785 to 36775931 146 - snoRNA gene predicted gene, 22554
D10Mit45 10 36910675 to 36910852 177 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 45
Cpgi1438 10 36973966 to 36975408 1442 CpG island CpG island 1438
Tssr3177 10 36974520 to 36974531 11 + TSS region transcription start site region 3177
Tssr92955 10 36974536 to 36974556 20 + TSS region transcription start site region 92955
Hdac2 10 36974544 to 37001889 27345 + protein coding gene histone deacetylase 2
Tssr92956 10 36974558 to 36974579 21 + TSS region transcription start site region 92956
Tssr92957 10 36974721 to 36974751 30 + TSS region transcription start site region 92957
Tssr92958 10 36975072 to 36975120 48 + TSS region transcription start site region 92958
Tssr92959 10 36997043 to 36997061 18 + TSS region transcription start site region 92959
Tssr3178 10 37075095 to 37075097 2 + TSS region transcription start site region 3178
Tssr92960 10 37078624 to 37078627 3 + TSS region transcription start site region 92960
Gm38231 10 37129744 to 37130090 346 + unclassified gene predicted gene, 38231
Marcks 10 37133375 to 37138920 5545 - protein coding gene myristoylated alanine rich protein kinase C substrate
Tssr97280 10 37135244 to 37135418 174 - TSS region transcription start site region 97280
Tssr97281 10 37135496 to 37135538 42 - TSS region transcription start site region 97281
Tssr97282 10 37135602 to 37135607 5 - TSS region transcription start site region 97282
Tssr3179 10 37135641 to 37135646 5 - TSS region transcription start site region 3179
Tssr97283 10 37135647 to 37135653 6 - TSS region transcription start site region 97283
Tssr97284 10 37135668 to 37135676 8 - TSS region transcription start site region 97284
Tssr97285 10 37135680 to 37135690 10 - TSS region transcription start site region 97285
Tssr97286 10 37135807 to 37135822 15 - TSS region transcription start site region 97286
Tssr97287 10 37135856 to 37135874 18 - TSS region transcription start site region 97287
Cpgi1439 10 37135867 to 37137842 1975 CpG island CpG island 1439
Tssr97288 10 37135928 to 37135942 14 - TSS region transcription start site region 97288
Tssr97289 10 37135975 to 37135987 12 - TSS region transcription start site region 97289
Tssr97290 10 37136003 to 37136011 8 - TSS region transcription start site region 97290
Tssr97291 10 37136015 to 37136052 37 - TSS region transcription start site region 97291
Tssr92961 10 37136015 to 37136049 34 + TSS region transcription start site region 92961
Tssr97292 10 37136055 to 37136060 5 - TSS region transcription start site region 97292
Tssr97293 10 37136063 to 37136077 14 - TSS region transcription start site region 97293
Tssr97294 10 37136092 to 37136101 9 - TSS region transcription start site region 97294
Tssr97295 10 37136106 to 37136120 14 - TSS region transcription start site region 97295
Tssr3180 10 37136129 to 37136136 7 - TSS region transcription start site region 3180
Tssr97296 10 37136140 to 37136183 43 - TSS region transcription start site region 97296
Tssr97297 10 37136192 to 37136219 27 - TSS region transcription start site region 97297
Tssr97298 10 37136227 to 37136289 62 - TSS region transcription start site region 97298
Tssr97299 10 37136585 to 37136600 15 - TSS region transcription start site region 97299
Tssr97300 10 37136625 to 37136649 24 - TSS region transcription start site region 97300
Tssr97301 10 37136796 to 37136808 12 - TSS region transcription start site region 97301
Tssr97302 10 37136948 to 37136972 24 - TSS region transcription start site region 97302
Tssr97303 10 37137021 to 37137047 26 - TSS region transcription start site region 97303
Tssr97304 10 37137274 to 37137293 19 - TSS region transcription start site region 97304
Tssr97305 10 37137312 to 37137335 23 - TSS region transcription start site region 97305
Tssr92962 10 37137526 to 37137530 4 + TSS region transcription start site region 92962
Cpgi1440 10 37138363 to 37139047 684 CpG island CpG island 1440
Tssr97306 10 37138496 to 37138502 6 - TSS region transcription start site region 97306
Tssr97307 10 37138545 to 37138552 7 - TSS region transcription start site region 97307
Tssr97308 10 37138553 to 37138572 19 - TSS region transcription start site region 97308
Tssr97309 10 37138573 to 37138574 1 - TSS region transcription start site region 97309
Tssr97310 10 37138583 to 37138588 5 - TSS region transcription start site region 97310
Tssr97311 10 37138602 to 37138636 34 - TSS region transcription start site region 97311
Tssr97312 10 37138647 to 37138660 13 - TSS region transcription start site region 97312
Tssr97313 10 37138666 to 37138677 11 - TSS region transcription start site region 97313
Tssr97314 10 37138757 to 37138761 4 - TSS region transcription start site region 97314
Tssr97315 10 37138780 to 37138794 14 - TSS region transcription start site region 97315
Tssr97316 10 37138800 to 37138814 14 - TSS region transcription start site region 97316
Tssr97317 10 37138819 to 37138830 11 - TSS region transcription start site region 97317
Tssr97318 10 37138863 to 37138937 74 - TSS region transcription start site region 97318
Tssr92963 10 37139525 to 37139540 15 + TSS region transcription start site region 92963
Cpgi1441 10 37140272 to 37140552 280 CpG island CpG island 1441
Cpgi1442 10 37140622 to 37141191 569 CpG island CpG island 1442
Tssr97319 10 37140733 to 37140761 28 - TSS region transcription start site region 97319
Tssr97320 10 37140802 to 37140831 29 - TSS region transcription start site region 97320
Tssr97321 10 37140937 to 37140981 44 - TSS region transcription start site region 97321
5930403N24Rik 10 37141078 to 37151317 10239 + lncRNA gene RIKEN cDNA 5930403N24 gene
Tssr97322 10 37141275 to 37141289 14 - TSS region transcription start site region 97322
Tssr97323 10 37141305 to 37141328 23 - TSS region transcription start site region 97323
Tssr97324 10 37160496 to 37160503 7 - TSS region transcription start site region 97324
Tssr97325 10 37233311 to 37233321 10 - TSS region transcription start site region 97325
Tssr92964 10 37239043 to 37239046 3 + TSS region transcription start site region 92964
4930543K20Rik 10 37263394 to 37263748 354 - lincRNA gene RIKEN cDNA 4930543K20 gene
Tssr92965 10 37315385 to 37315390 5 + TSS region transcription start site region 92965
Gm26535 10 37319505 to 37338948 19443 + lincRNA gene predicted gene, 26535
Tssr97326 10 37321318 to 37321338 20 - TSS region transcription start site region 97326
Gm31202 10 37360698 to 37364361 3663 - lncRNA gene predicted gene, 31202
Gm31330 10 37430435 to 37436975 6540 - lncRNA gene predicted gene, 31330
Gm48172 10 37452452 to 37452680 228 - pseudogene predicted gene, 48172
Gm24710 10 37931680 to 37931780 100 + miRNA gene predicted gene, 24710
Gm46220 10 38059341 to 38063357 4016 + lncRNA gene predicted gene, 46220
2210408O09Rik 10 38059545 to 38063355 3810 unclassified non-coding RNA gene RIKEN cDNA 2210408O09 gene
Gm31378 10 38116245 to 38122061 5816 - lincRNA gene predicted gene, 31378
Tssr3181 10 38169832 to 38169834 2 + TSS region transcription start site region 3181
4930591E09Rik 10 38175780 to 38181903 6123 + lincRNA gene RIKEN cDNA 4930591E09 gene
Gm24889 10 38179453 to 38179584 131 + snoRNA gene predicted gene, 24889
Gm24297 10 38213359 to 38213426 67 + snoRNA gene predicted gene, 24297
Gm48173 10 38216579 to 38216872 293 - pseudogene predicted gene, 48173
Gm48197 10 38295074 to 38313846 18772 - lincRNA gene predicted gene, 48197
Gm40624 10 38354784 to 38382402 27618 + lncRNA gene predicted gene, 40624
Gm48198 10 38433979 to 38434135 156 - pseudogene predicted gene, 48198
Gm22911 10 38615375 to 38615481 106 - snRNA gene predicted gene, 22911
Rfpl4b 10 38820541 to 38821779 1238 - protein coding gene ret finger protein-like 4B