Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:33877216-34105055

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sult3a1 10 33857721 to 33879532 21811 + protein coding gene sulfotransferase family 3A, member 1
Gm47940 10 33894093 to 33894256 163 - pseudogene predicted gene, 47940
Tssr92922 10 33905015 to 33905047 32 + TSS region transcription start site region 92922
Rsph4a 10 33905111 to 33916021 10910 + protein coding gene radial spoke head 4 homolog A (Chlamydomonas)
Zup1 10 33919142 to 33951269 32127 - protein coding gene zinc finger containing ubiquitin peptidase 1
Tssr97232 10 33924662 to 33924677 15 - TSS region transcription start site region 97232
Tssr97233 10 33927027 to 33927041 14 - TSS region transcription start site region 97233
Tssr97234 10 33933068 to 33933088 20 - TSS region transcription start site region 97234
Tssr97235 10 33933131 to 33933148 17 - TSS region transcription start site region 97235
Tssr97236 10 33933159 to 33933170 11 - TSS region transcription start site region 97236
Tssr97237 10 33933177 to 33933189 12 - TSS region transcription start site region 97237
Tssr97238 10 33933201 to 33933222 21 - TSS region transcription start site region 97238
Tssr97239 10 33933394 to 33933406 12 - TSS region transcription start site region 97239
Tssr97240 10 33936627 to 33936651 24 - TSS region transcription start site region 97240
Tssr97241 10 33937613 to 33937655 42 - TSS region transcription start site region 97241
Tssr97242 10 33939883 to 33939899 16 - TSS region transcription start site region 97242
Tssr97243 10 33947808 to 33947813 5 - TSS region transcription start site region 97243
Tssr97244 10 33949489 to 33949502 13 - TSS region transcription start site region 97244
Cpgi1429 10 33950835 to 33951333 498 CpG island CpG island 1429
Tssr97245 10 33951190 to 33951263 73 - TSS region transcription start site region 97245
Gm48018 10 33969983 to 33976689 6706 + pseudogene predicted gene, 48018
Gm7940 10 33972801 to 33973569 768 - pseudogene predicted gene 7940
Gm48034 10 33980497 to 33980840 343 - pseudogene predicted gene, 48034
A830082N09Rik 10 33987216 to 33995055 7839 - lncRNA gene RIKEN cDNA A830082N09 gene
Rwdd1 10 33996555 to 34019616 23061 - protein coding gene RWD domain containing 1
Gm48045 10 34018815 to 34020762 1947 + antisense lncRNA gene predicted gene, 48045
Cpgi1430 10 34019007 to 34020105 1098 CpG island CpG island 1430
Tssr3174 10 34019390 to 34019401 11 - TSS region transcription start site region 3174
Tssr97246 10 34019469 to 34019478 9 - TSS region transcription start site region 97246
Tssr97247 10 34019497 to 34019559 62 - TSS region transcription start site region 97247
Tssr97248 10 34019561 to 34019626 65 - TSS region transcription start site region 97248
Tssr97249 10 34019628 to 34019638 10 - TSS region transcription start site region 97249
Cpgi1431 10 34033922 to 34034259 337 CpG island CpG island 1431
Trappc3l 10 34037597 to 34109815 72218 + protein coding gene trafficking protein particle complex 3 like
Calhm4 10 34038784 to 34044310 5526 - protein coding gene calcium homeostasis modulator family member 4
Tssr97250 10 34044278 to 34044283 5 - TSS region transcription start site region 97250
Tssr97251 10 34044294 to 34044299 5 - TSS region transcription start site region 97251
Tssr97252 10 34044302 to 34044317 15 - TSS region transcription start site region 97252
D10Mit192 10 34066356 to 34066477 121 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 192
Calhm5 10 34091352 to 34096519 5167 - protein coding gene calcium homeostasis modulator family member 5
Tssr97253 10 34096375 to 34096389 14 - TSS region transcription start site region 97253
Tssr97254 10 34096464 to 34096467 3 - TSS region transcription start site region 97254
Tssr97255 10 34096480 to 34096497 17 - TSS region transcription start site region 97255
Tssr97256 10 34096507 to 34096554 47 - TSS region transcription start site region 97256