Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:3298895-4278899

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29826 10 3268040 to 3355877 87837 + lncRNA gene predicted gene, 29826
Gm18703 10 3303049 to 3303381 332 + pseudogene predicted gene, 18703
Gm40590 10 3345480 to 3346710 1230 - lncRNA gene predicted gene, 40590
Gm26752 10 3364073 to 3367135 3062 - lincRNA gene predicted gene, 26752
Ppp1r14c 10 3366071 to 3464975 98904 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 14C
Cpgi1271 10 3366088 to 3367416 1328 CpG island CpG island 1271
Tssr92203 10 3366125 to 3366160 35 + TSS region transcription start site region 92203
Tssr92204 10 3366170 to 3366207 37 + TSS region transcription start site region 92204
Tssr92205 10 3366209 to 3366220 11 + TSS region transcription start site region 92205
Tssr3109 10 3366271 to 3366283 12 + TSS region transcription start site region 3109
Tssr92206 10 3366351 to 3366380 29 + TSS region transcription start site region 92206
Tssr92207 10 3366506 to 3366590 84 + TSS region transcription start site region 92207
Tssr92208 10 3391264 to 3391266 2 + TSS region transcription start site region 92208
Tssr92209 10 3395782 to 3395814 32 + TSS region transcription start site region 92209
Gm24482 10 3425023 to 3425115 92 + miRNA gene predicted gene, 24482
Tssr92210 10 3452534 to 3452550 16 + TSS region transcription start site region 92210
Gm29987 10 3482654 to 3497390 14736 + lncRNA gene predicted gene, 29987
Gm30033 10 3509826 to 3539627 29801 + lncRNA gene predicted gene, 30033
Tssr92211 10 3540232 to 3540246 14 + TSS region transcription start site region 92211
Tssr92212 10 3540265 to 3540282 17 + TSS region transcription start site region 92212
Iyd 10 3540279 to 3554877 14598 + protein coding gene iodotyrosine deiodinase
A330032P22Rik 10 3717773 to 3731905 14132 + lncRNA gene RIKEN cDNA A330032P22 gene
Tssr92213 10 3718152 to 3718168 16 + TSS region transcription start site region 92213
Gm30164 10 3730209 to 3760159 29950 - lncRNA gene predicted gene, 30164
Cpgi1270 10 3740216 to 3741066 850 CpG island CpG island 1270
Tssr92214 10 3740253 to 3740271 18 + TSS region transcription start site region 92214
Tssr92215 10 3740348 to 3740430 82 + TSS region transcription start site region 92215
Plekhg1 10 3740364 to 3967303 226939 + protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 1
Tssr92216 10 3740453 to 3740486 33 + TSS region transcription start site region 92216
Tssr92217 10 3740644 to 3740671 27 + TSS region transcription start site region 92217
Tssr96504 10 3755187 to 3755234 47 - TSS region transcription start site region 96504
Tssr3110 10 3758392 to 3758400 8 + TSS region transcription start site region 3110
Tssr92218 10 3788895 to 3788899 4 + TSS region transcription start site region 92218
Tssr92219 10 3789377 to 3789378 1 + TSS region transcription start site region 92219
Tssr92220 10 3834876 to 3834904 28 + TSS region transcription start site region 92220
Tssr92221 10 3834911 to 3834928 17 + TSS region transcription start site region 92221
Tssr3111 10 3859666 to 3859673 7 + TSS region transcription start site region 3111
Tssr92222 10 3859680 to 3859690 10 + TSS region transcription start site region 92222
Tssr92223 10 3859736 to 3859774 38 + TSS region transcription start site region 92223
Tssr92224 10 3863689 to 3863706 17 + TSS region transcription start site region 92224
Tssr92225 10 3863793 to 3863811 18 + TSS region transcription start site region 92225
Tssr92226 10 3863818 to 3863842 24 + TSS region transcription start site region 92226
Tssr92227 10 3863851 to 3863866 15 + TSS region transcription start site region 92227
Tssr92228 10 3863880 to 3863889 9 + TSS region transcription start site region 92228
Gm16149 10 3869299 to 3869607 308 - pseudogene predicted gene 16149
Tssr92229 10 3872780 to 3872788 8 + TSS region transcription start site region 92229
Tssr92230 10 3872806 to 3872818 12 + TSS region transcription start site region 92230
Tssr92231 10 3874659 to 3874668 9 + TSS region transcription start site region 92231
D10Mit166 10 3887960 to 3888068 108 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 166
Gm23023 10 3934769 to 3934877 108 - rRNA gene predicted gene, 23023
Gm16148 10 3946191 to 3947066 875 - pseudogene predicted gene 16148
Cpgi1269 10 3972917 to 3974077 1160 CpG island CpG island 1269
Tssr92232 10 3973086 to 3973157 71 + TSS region transcription start site region 92232
Mthfd1l 10 3973118 to 4167081 193963 + protein coding gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
Tssr92233 10 3973166 to 3973178 12 + TSS region transcription start site region 92233
Tssr92234 10 3973187 to 3973208 21 + TSS region transcription start site region 92234
Tssr92235 10 3973215 to 3973245 30 + TSS region transcription start site region 92235
Gm16074 10 3992371 to 3992814 443 + pseudogene predicted gene 16074
Gm40591 10 4075497 to 4083812 8315 - lncRNA gene predicted gene, 40591
Tssr92236 10 4089944 to 4089950 6 + TSS region transcription start site region 92236
Gm25515 10 4104313 to 4104469 156 + snRNA gene predicted gene, 25515
Tssr92237 10 4106316 to 4106327 11 + TSS region transcription start site region 92237
Tssr3112 10 4156355 to 4156358 3 + TSS region transcription start site region 3112
Gm25369 10 4169887 to 4170018 131 + snoRNA gene predicted gene, 25369
Gm30570 10 4206426 to 4213114 6688 - lincRNA gene predicted gene, 30570
Tssr92238 10 4242467 to 4242498 31 + TSS region transcription start site region 92238
Tssr92239 10 4243906 to 4243912 6 + TSS region transcription start site region 92239
Cpgi1268 10 4265577 to 4265829 252 CpG island CpG island 1268
Tssr3113 10 4266117 to 4266135 18 + TSS region transcription start site region 3113
Cpgi1267 10 4266302 to 4267142 840 CpG island CpG island 1267
Tssr92240 10 4266323 to 4266341 18 + TSS region transcription start site region 92240
Tssr92241 10 4266353 to 4266374 21 + TSS region transcription start site region 92241
Akap12 10 4266380 to 4359470 93090 + protein coding gene A kinase (PRKA) anchor protein (gravin) 12
Tssr3114 10 4266530 to 4266531 1 + TSS region transcription start site region 3114
Tssr92242 10 4268475 to 4268484 9 + TSS region transcription start site region 92242
Gm40592 10 4277338 to 4310737 33399 - lncRNA gene predicted gene, 40592