Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:28863134-32483227

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igan1 10 17842565 to 29828159 11985594 QTL IgA nephropathy 1
Themis 10 28668360 to 28883818 215458 + protein coding gene thymocyte selection associated
Tssr92856 10 28863562 to 28863603 41 + TSS region transcription start site region 92856
Tssr92857 10 28874021 to 28874024 3 + TSS region transcription start site region 92857
Gm47835 10 28920497 to 28921142 645 + pseudogene predicted gene, 47835
4930519F09Rik 10 28921963 to 28923507 1544 - pseudogene RIKEN cDNA 4930519F09 gene
Gm22811 10 28954149 to 28954302 153 - ribozyme gene predicted gene, 22811
2310057J18Rik 10 28972288 to 28986303 14015 - protein coding gene RIKEN cDNA 2310057J18 gene
Tssr97152 10 28973964 to 28973968 4 - TSS region transcription start site region 97152
Tssr97153 10 28985314 to 28985323 9 - TSS region transcription start site region 97153
Tssr97154 10 28985379 to 28985385 6 - TSS region transcription start site region 97154
Tssr97155 10 28986209 to 28986259 50 - TSS region transcription start site region 97155
Tssr97156 10 28986280 to 28986313 33 - TSS region transcription start site region 97156
Tssr97157 10 28986331 to 28986344 13 - TSS region transcription start site region 97157
Gm18508 10 28988799 to 28990440 1641 - pseudogene predicted gene, 18508
Tssr92858 10 29030069 to 29030118 49 + TSS region transcription start site region 92858
Gm9824 10 29030128 to 29030688 560 + pseudogene predicted pseudogene 9824
Tssr92859 10 29030737 to 29030761 24 + TSS region transcription start site region 92859
Gm30619 10 29032131 to 29035452 3321 - pseudogene predicted gene, 30619
Tssr97158 10 29035459 to 29035463 4 - TSS region transcription start site region 97158
Tssr97159 10 29052236 to 29052240 4 - TSS region transcription start site region 97159
Gm9996 10 29143282 to 29144194 912 - protein coding gene predicted gene 9996
Cpgi1408 10 29143540 to 29143750 210 CpG island CpG island 1408
Tssr92860 10 29143649 to 29143720 71 + TSS region transcription start site region 92860
Tssr92861 10 29143722 to 29143732 10 + TSS region transcription start site region 92861
Soga3 10 29143839 to 29199630 55791 + protein coding gene SOGA family member 3
Cpgi1409 10 29144090 to 29144276 186 CpG island CpG island 1409
Tssr92862 10 29144113 to 29144126 13 + TSS region transcription start site region 92862
Tssr92863 10 29144129 to 29144164 35 + TSS region transcription start site region 92863
Tssr92864 10 29144218 to 29144229 11 + TSS region transcription start site region 92864
Cpgi1410 10 29146560 to 29147712 1152 CpG island CpG island 1410
Tssr92865 10 29146699 to 29146741 42 + TSS region transcription start site region 92865
Tssr92866 10 29147206 to 29147282 76 + TSS region transcription start site region 92866
Cpgi1411 10 29148103 to 29148485 382 CpG island CpG island 1411
D10Mit3 10 29152186 to 29152428 242 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 3
Mop2 10 29152428 to 9413375 -19739053 QTL morphine preference 2
Cpgi1412 10 29196496 to 29197532 1036 CpG island CpG island 1412
Gm49353 10 29198954 to 29221940 22986 + protein coding gene predicted gene, 49353
Tssr92867 10 29200597 to 29200614 17 + TSS region transcription start site region 92867
Tssr92868 10 29200815 to 29200853 38 + TSS region transcription start site region 92868
4832406H04Rik 10 29206263 to 29210920 4657 unclassified gene RIKEN cDNA 4832406H04 gene
9330159F19Rik 10 29211606 to 29230779 19173 + protein coding gene RIKEN cDNA 9330159F19 gene
Tssr92869 10 29211637 to 29211649 12 + TSS region transcription start site region 92869
Tssr92870 10 29211662 to 29211700 38 + TSS region transcription start site region 92870
Tssr92871 10 29211775 to 29211805 30 + TSS region transcription start site region 92871
Tssr92872 10 29216016 to 29216021 5 + TSS region transcription start site region 92872
Gm40620 10 29287247 to 29290497 3250 - lncRNA gene predicted gene, 40620
Gm46218 10 29297934 to 29313825 15891 - antisense lncRNA gene predicted gene, 46218
Tssr92873 10 29310988 to 29310995 7 + TSS region transcription start site region 92873
Cpgi1413 10 29313122 to 29313694 572 CpG island CpG island 1413
Tssr92874 10 29313164 to 29313221 57 + TSS region transcription start site region 92874
Echdc1 10 29313166 to 29347469 34303 + protein coding gene enoyl Coenzyme A hydratase domain containing 1
Tssr92875 10 29313227 to 29313238 11 + TSS region transcription start site region 92875
Tssr97160 10 29313375 to 29313409 34 - TSS region transcription start site region 97160
Tssr92876 10 29313525 to 29313594 69 + TSS region transcription start site region 92876
Tssr92877 10 29313621 to 29313630 9 + TSS region transcription start site region 92877
Rnf146 10 29344176 to 29362442 18266 - protein coding gene ring finger protein 146
Gm25596 10 29349585 to 29349691 106 + snRNA gene predicted gene, 25596
Gm47483 10 29351879 to 29353893 2014 - unclassified gene predicted gene, 47483
Tssr3172 10 29357770 to 29357777 7 + TSS region transcription start site region 3172
Tssr97161 10 29361346 to 29361351 5 - TSS region transcription start site region 97161
Cpgi1414 10 29361391 to 29362475 1084 CpG island CpG island 1414
Gm30698 10 29361396 to 29362623 1227 + protein coding gene predicted gene, 30698
Tssr97162 10 29362012 to 29362029 17 - TSS region transcription start site region 97162
Tssr97163 10 29362032 to 29362075 43 - TSS region transcription start site region 97163
Gm40621 10 29367610 to 29375529 7919 + lincRNA gene predicted gene, 40621
Gm24286 10 29395036 to 29395163 127 + snoRNA gene predicted gene, 24286
Gm18903 10 29426346 to 29426904 558 + pseudogene predicted gene, 18903
Rspo3 10 29453106 to 29535867 82761 - protein coding gene R-spondin 3
Gm20276 10 29490774 to 29493421 2647 - unclassified gene predicted gene, 20276
Cpgi1415 10 29533529 to 29533733 204 CpG island CpG island 1415
Cpgi1416 10 29534476 to 29534773 297 CpG island CpG island 1416
Gm48159 10 29534717 to 29614471 79754 + antisense lncRNA gene predicted gene, 48159
Tssr92878 10 29535121 to 29535122 1 + TSS region transcription start site region 92878
Cpgi1417 10 29535422 to 29536139 717 CpG island CpG island 1417
Tssr97164 10 29535787 to 29535801 14 - TSS region transcription start site region 97164
Tssr97165 10 29535807 to 29535849 42 - TSS region transcription start site region 97165
Tssr97166 10 29535857 to 29535880 23 - TSS region transcription start site region 97166
Gm46197 10 29614161 to 29614576 415 - pseudogene predicted gene, 46197
Gm46219 10 29693117 to 29702624 9507 - lncRNA gene predicted gene, 46219
Gm10275 10 29698746 to 29699379 633 - pseudogene predicted pseudogene 10275
Tssr97167 10 29699379 to 29699382 3 - TSS region transcription start site region 97167
Gm6390 10 29781411 to 29781999 588 + pseudogene predicted gene 6390
D10Mit85 10 29828023 to 29828159 136 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 85
D10Mit137 10 29983943 to 29984068 125 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 137
Gm48215 10 29984178 to 30004378 20200 - lincRNA gene predicted gene, 48215
Tssr92879 10 30010894 to 30010925 31 + TSS region transcription start site region 92879
Gm232 10 30011295 to 30017295 6000 + pseudogene predicted gene 232
D10Mit19 10 30022159 to 30022282 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 19
Gm8767 10 30084265 to 30085334 1069 - pseudogene predicted gene 8767
Gm2829 10 30179726 to 30180224 498 + pseudogene predicted gene 2829
Cenpw 10 30196009 to 30200604 4595 - protein coding gene centromere protein W
Cpgi1418 10 30200160 to 30200751 591 CpG island CpG island 1418
Tssr97168 10 30200492 to 30200542 50 - TSS region transcription start site region 97168
Tssr97169 10 30200547 to 30200573 26 - TSS region transcription start site region 97169
Tssr97170 10 30200594 to 30200605 11 - TSS region transcription start site region 97170
Gm4780 10 30373222 to 30374713 1491 + pseudogene predicted gene 4780
Gm40622 10 30450520 to 30451703 1183 + lncRNA gene predicted gene, 40622
Gm22623 10 30493942 to 30494048 106 + snRNA gene predicted gene, 22623
Gm48232 10 30511760 to 30514123 2363 - unclassified gene predicted gene, 48232
Gm48233 10 30530914 to 30532030 1116 - unclassified gene predicted gene, 48233
Trmt11 10 30534225 to 30600749 66524 - protein coding gene tRNA methyltransferase 11
Tssr97171 10 30552153 to 30552154 1 - TSS region transcription start site region 97171
Cpgi1419 10 30600147 to 30600959 812 CpG island CpG island 1419
Tssr97172 10 30600662 to 30600701 39 - TSS region transcription start site region 97172
Gm20300 10 30603195 to 30606634 3439 - lincRNA gene predicted gene, 20300
Hint3 10 30608207 to 30629401 21194 - protein coding gene histidine triad nucleotide binding protein 3
Cpgi1420 10 30618067 to 30618694 627 CpG island CpG island 1420
Tssr97173 10 30618340 to 30618395 55 - TSS region transcription start site region 97173
Tssr97174 10 30618417 to 30618428 11 - TSS region transcription start site region 97174
Tssr97175 10 30618436 to 30618473 37 - TSS region transcription start site region 97175
Tssr97176 10 30618483 to 30618494 11 - TSS region transcription start site region 97176
Tssr97177 10 30623532 to 30623537 5 - TSS region transcription start site region 97177
Tssr97178 10 30628499 to 30628505 6 - TSS region transcription start site region 97178
Tssr97179 10 30629648 to 30629653 5 - TSS region transcription start site region 97179
Ncoa7 10 30645582 to 30803360 157778 - protein coding gene nuclear receptor coactivator 7
Tssr97180 10 30647064 to 30647077 13 - TSS region transcription start site region 97180
Tssr97181 10 30655724 to 30655729 5 - TSS region transcription start site region 97181
Tssr97182 10 30655753 to 30655762 9 - TSS region transcription start site region 97182
Tssr97183 10 30655773 to 30655810 37 - TSS region transcription start site region 97183
Tssr97184 10 30655841 to 30655852 11 - TSS region transcription start site region 97184
Tssr97185 10 30655859 to 30655868 9 - TSS region transcription start site region 97185
Gm24189 10 30673134 to 30673227 93 - rRNA gene predicted gene, 24189
Tssr97186 10 30700056 to 30700061 5 - TSS region transcription start site region 97186
Gm48335 10 30740152 to 30743962 3810 - unclassified gene predicted gene, 48335
Tssr97187 10 30745845 to 30745888 43 - TSS region transcription start site region 97187
Tssr97188 10 30763557 to 30763561 4 - TSS region transcription start site region 97188
Gm48334 10 30768799 to 30769575 776 - unclassified gene predicted gene, 48334
Tssr97189 10 30771842 to 30771851 9 - TSS region transcription start site region 97189
Tssr97190 10 30771884 to 30771921 37 - TSS region transcription start site region 97190
Gm5171 10 30780857 to 30782271 1414 - pseudogene predicted gene 5171
Tssr97191 10 30793309 to 30793313 4 - TSS region transcription start site region 97191
Cpgi1421 10 30802545 to 30803739 1194 CpG island CpG island 1421
Tssr97192 10 30802854 to 30802865 11 - TSS region transcription start site region 97192
Tssr97193 10 30802884 to 30802946 62 - TSS region transcription start site region 97193
Tssr97194 10 30803075 to 30803154 79 - TSS region transcription start site region 97194
Tssr97195 10 30803285 to 30803376 91 - TSS region transcription start site region 97195
n-TEctc9 10 30811140 to 30811211 71 + tRNA gene nuclear encoded tRNA glutamic acid 9 (anticodon CTC)
Gm30618 10 30819685 to 30828396 8711 + lncRNA gene predicted gene, 30618
Hey2 10 30832359 to 30842783 10424 - protein coding gene hairy/enhancer-of-split related with YRPW motif 2
Tssr97196 10 30837892 to 30837911 19 - TSS region transcription start site region 97196
Cpgi1422 10 30842179 to 30843475 1296 CpG island CpG island 1422
Tssr97197 10 30842765 to 30842791 26 - TSS region transcription start site region 97197
Tssr97198 10 30842811 to 30842831 20 - TSS region transcription start site region 97198
Tssr97199 10 30843133 to 30843163 30 - TSS region transcription start site region 97199
Cpgi1423 10 30843946 to 30844529 583 CpG island CpG island 1423
Gm48862 10 30880517 to 30880850 333 + pseudogene predicted gene, 48862
Gm24168 10 30942379 to 30942485 106 - snRNA gene predicted gene, 24168
Tssr97200 10 30978753 to 30978755 2 - TSS region transcription start site region 97200
Gm30676 10 31029203 to 31066231 37028 - lincRNA gene predicted gene, 30676
Gm23790 10 31163526 to 31163632 106 - snRNA gene predicted gene, 23790
Gm7333 10 31209273 to 31210332 1059 + pseudogene predicted gene 7333
Gm5422 10 31248137 to 31251043 2906 + pseudogene predicted pseudogene 5422
D10Mit253 10 31257862 to 31257987 125 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 253
Cpgi1424 10 31313201 to 31314020 819 CpG island CpG island 1424
Hddc2 10 31313367 to 31328086 14719 + protein coding gene HD domain containing 2
Tssr92880 10 31313375 to 31313420 45 + TSS region transcription start site region 92880
Tssr92881 10 31313431 to 31313442 11 + TSS region transcription start site region 92881
Tssr92882 10 31313447 to 31313452 5 + TSS region transcription start site region 92882
n-R5s76 10 31317169 to 31317281 112 - rRNA gene nuclear encoded rRNA 5S 76
Gm48865 10 31321418 to 31324022 2604 + unclassified gene predicted gene, 48865
Tpd52l1 10 31332376 to 31445958 113582 - protein coding gene tumor protein D52-like 1
D730042M07Rik 10 31372419 to 31373009 590 unclassified gene RIKEN cDNA D730042M07 gene
Tssr97201 10 31390453 to 31390459 6 - TSS region transcription start site region 97201
Tssr92883 10 31391348 to 31391349 1 + TSS region transcription start site region 92883
Gm48094 10 31398923 to 31414401 15478 + antisense lncRNA gene predicted gene, 48094
Supt4b 10 31413815 to 31414165 350 - protein coding gene suppressor of Ty 4B
Gm48092 10 31423529 to 31426090 2561 - unclassified gene predicted gene, 48092
Gm48093 10 31429993 to 31433506 3513 + antisense lncRNA gene predicted gene, 48093
D10Mit284 10 31443581 to 31443690 109 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 284
Cpgi1425 10 31445195 to 31446178 983 CpG island CpG island 1425
Tssr97202 10 31445802 to 31445848 46 - TSS region transcription start site region 97202
Tssr97203 10 31445849 to 31445894 45 - TSS region transcription start site region 97203
Tssr97204 10 31445943 to 31445967 24 - TSS region transcription start site region 97204
Gm47687 10 31448257 to 31452082 3825 - unclassified gene predicted gene, 47687
3110035C09Rik 10 31499858 to 31501526 1668 unclassified gene RIKEN cDNA 3110035C09 gene
Rnf217 10 31501887 to 31609725 107838 - protein coding gene ring finger protein 217
D10Mit155 10 31550768 to 31550915 147 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 155
Gm47693 10 31555920 to 31557440 1520 - unclassified gene predicted gene, 47693
Gm7909 10 31574400 to 31575013 613 - pseudogene predicted gene 7909
Tssr97205 10 31599796 to 31599800 4 - TSS region transcription start site region 97205
Cpgi1426 10 31608300 to 31610037 1737 CpG island CpG island 1426
Tssr97206 10 31608613 to 31608630 17 - TSS region transcription start site region 97206
Tssr97207 10 31609638 to 31609705 67 - TSS region transcription start site region 97207
Tssr97208 10 31609718 to 31609732 14 - TSS region transcription start site region 97208
Tssr97209 10 31609818 to 31609870 52 - TSS region transcription start site region 97209
Gm8793 10 31639158 to 31640460 1302 + pseudogene predicted gene 8793
Nkain2 10 31689310 to 32890462 1201152 - protein coding gene Na+/K+ transporting ATPase interacting 2
Tssr97210 10 31690582 to 31690587 5 - TSS region transcription start site region 97210
Gm47704 10 31867912 to 31871101 3189 + unclassified gene predicted gene, 47704
Gm18189 10 31971719 to 31973669 1950 - pseudogene predicted gene, 18189
Tssr92884 10 31976743 to 31976752 9 + TSS region transcription start site region 92884
Tssr97211 10 32051203 to 32051209 6 - TSS region transcription start site region 97211
2900052O17Rik 10 32097536 to 32098348 812 unclassified gene RIKEN cDNA 2900052O17 gene
A230081H15Rik 10 32263611 to 32266539 2928 - unclassified gene Riken cDNA A230081H15 gene
C030006N10Rik 10 32279177 to 32279693 516 - unclassified gene RIKEN cDNA C030006N10 gene
Gm18704 10 32369555 to 32370292 737 - pseudogene predicted gene, 18704
D10Mit191 10 32462429 to 32462725 296 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 191
Tssr97212 10 32478762 to 32478765 3 - TSS region transcription start site region 97212