Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:28503023-31153159

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191 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igan1 10 17842565 to 29828159 11985594 QTL IgA nephropathy 1
Ptprk 10 28074820 to 28597397 522577 + protein coding gene protein tyrosine phosphatase, receptor type, K
Tssr92822 10 28586730 to 28586771 41 + TSS region transcription start site region 92822
Tssr92823 10 28611944 to 28611945 1 + TSS region transcription start site region 92823
Tssr92824 10 28611947 to 28611955 8 + TSS region transcription start site region 92824
Themis 10 28668360 to 28883818 215458 + protein coding gene thymocyte selection associated
Tssr92825 10 28668388 to 28668404 16 + TSS region transcription start site region 92825
Tssr92826 10 28668453 to 28668458 5 + TSS region transcription start site region 92826
Tssr92827 10 28668462 to 28668477 15 + TSS region transcription start site region 92827
Tssr92828 10 28668489 to 28668498 9 + TSS region transcription start site region 92828
Tssr92829 10 28668545 to 28668552 7 + TSS region transcription start site region 92829
Tssr92830 10 28668560 to 28668637 77 + TSS region transcription start site region 92830
Tssr92831 10 28668648 to 28668652 4 + TSS region transcription start site region 92831
Tssr92832 10 28672277 to 28672306 29 + TSS region transcription start site region 92832
A130091G23Rik 10 28681643 to 28685113 3470 unclassified gene RIKEN cDNA A130091G23 gene
Tssr3170 10 28697612 to 28697615 3 + TSS region transcription start site region 3170
Tssr92833 10 28730813 to 28730819 6 + TSS region transcription start site region 92833
Tssr92834 10 28736130 to 28736144 14 + TSS region transcription start site region 92834
Tssr92835 10 28744477 to 28744481 4 + TSS region transcription start site region 92835
Tssr3171 10 28747513 to 28747558 45 + TSS region transcription start site region 3171
A130096G17Rik 10 28748242 to 28752319 4077 unclassified gene RIKEN cDNA A130096G17 gene
Tssr92836 10 28757208 to 28757213 5 + TSS region transcription start site region 92836
Tssr92837 10 28784963 to 28784980 17 + TSS region transcription start site region 92837
Tssr92838 10 28791580 to 28791603 23 + TSS region transcription start site region 92838
Tssr92839 10 28791667 to 28791678 11 + TSS region transcription start site region 92839
Tssr92840 10 28791684 to 28791707 23 + TSS region transcription start site region 92840
Tssr92841 10 28793536 to 28793544 8 + TSS region transcription start site region 92841
Gm47834 10 28806294 to 28806756 462 - pseudogene predicted gene, 47834
Tssr92842 10 28807574 to 28807585 11 + TSS region transcription start site region 92842
Tssr92843 10 28808888 to 28808893 5 + TSS region transcription start site region 92843
Tssr92844 10 28809042 to 28809053 11 + TSS region transcription start site region 92844
Tssr92845 10 28823064 to 28823067 3 + TSS region transcription start site region 92845
Tssr92846 10 28824303 to 28824315 12 + TSS region transcription start site region 92846
Tssr92847 10 28827116 to 28827121 5 + TSS region transcription start site region 92847
Tssr92848 10 28827404 to 28827413 9 + TSS region transcription start site region 92848
Tssr92849 10 28836731 to 28836735 4 + TSS region transcription start site region 92849
Tssr92850 10 28837555 to 28837559 4 + TSS region transcription start site region 92850
Tssr92851 10 28837790 to 28837794 4 + TSS region transcription start site region 92851
Tssr92852 10 28843945 to 28843954 9 + TSS region transcription start site region 92852
Tssr92853 10 28843981 to 28843997 16 + TSS region transcription start site region 92853
Tssr92854 10 28844006 to 28844019 13 + TSS region transcription start site region 92854
Tssr92855 10 28844053 to 28844068 15 + TSS region transcription start site region 92855
A430036H03Rik 10 28857153 to 28861513 4360 unclassified gene RIKEN cDNA A430036H03 gene
Tssr92856 10 28863562 to 28863603 41 + TSS region transcription start site region 92856
Tssr92857 10 28874021 to 28874024 3 + TSS region transcription start site region 92857
Gm47835 10 28920497 to 28921142 645 + pseudogene predicted gene, 47835
4930519F09Rik 10 28921963 to 28923507 1544 - pseudogene RIKEN cDNA 4930519F09 gene
Gm22811 10 28954149 to 28954302 153 - ribozyme gene predicted gene, 22811
2310057J18Rik 10 28972288 to 28986303 14015 - protein coding gene RIKEN cDNA 2310057J18 gene
Tssr97152 10 28973964 to 28973968 4 - TSS region transcription start site region 97152
Tssr97153 10 28985314 to 28985323 9 - TSS region transcription start site region 97153
Tssr97154 10 28985379 to 28985385 6 - TSS region transcription start site region 97154
Tssr97155 10 28986209 to 28986259 50 - TSS region transcription start site region 97155
Tssr97156 10 28986280 to 28986313 33 - TSS region transcription start site region 97156
Tssr97157 10 28986331 to 28986344 13 - TSS region transcription start site region 97157
Gm18508 10 28988799 to 28990440 1641 - pseudogene predicted gene, 18508
Tssr92858 10 29030069 to 29030118 49 + TSS region transcription start site region 92858
Gm9824 10 29030128 to 29030688 560 + pseudogene predicted pseudogene 9824
Tssr92859 10 29030737 to 29030761 24 + TSS region transcription start site region 92859
Gm30619 10 29032131 to 29035452 3321 - pseudogene predicted gene, 30619
Tssr97158 10 29035459 to 29035463 4 - TSS region transcription start site region 97158
Tssr97159 10 29052236 to 29052240 4 - TSS region transcription start site region 97159
Gm9996 10 29143282 to 29144194 912 - protein coding gene predicted gene 9996
Cpgi1408 10 29143540 to 29143750 210 CpG island CpG island 1408
Tssr92860 10 29143649 to 29143720 71 + TSS region transcription start site region 92860
Tssr92861 10 29143722 to 29143732 10 + TSS region transcription start site region 92861
Soga3 10 29143839 to 29199630 55791 + protein coding gene SOGA family member 3
Cpgi1409 10 29144090 to 29144276 186 CpG island CpG island 1409
Tssr92862 10 29144113 to 29144126 13 + TSS region transcription start site region 92862
Tssr92863 10 29144129 to 29144164 35 + TSS region transcription start site region 92863
Tssr92864 10 29144218 to 29144229 11 + TSS region transcription start site region 92864
Cpgi1410 10 29146560 to 29147712 1152 CpG island CpG island 1410
Tssr92865 10 29146699 to 29146741 42 + TSS region transcription start site region 92865
Tssr92866 10 29147206 to 29147282 76 + TSS region transcription start site region 92866
Cpgi1411 10 29148103 to 29148485 382 CpG island CpG island 1411
D10Mit3 10 29152186 to 29152428 242 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 3
Mop2 10 29152428 to 9413375 -19739053 QTL morphine preference 2
Cpgi1412 10 29196496 to 29197532 1036 CpG island CpG island 1412
Gm49353 10 29198954 to 29221940 22986 + protein coding gene predicted gene, 49353
Tssr92867 10 29200597 to 29200614 17 + TSS region transcription start site region 92867
Tssr92868 10 29200815 to 29200853 38 + TSS region transcription start site region 92868
4832406H04Rik 10 29206263 to 29210920 4657 unclassified gene RIKEN cDNA 4832406H04 gene
9330159F19Rik 10 29211606 to 29230779 19173 + protein coding gene RIKEN cDNA 9330159F19 gene
Tssr92869 10 29211637 to 29211649 12 + TSS region transcription start site region 92869
Tssr92870 10 29211662 to 29211700 38 + TSS region transcription start site region 92870
Tssr92871 10 29211775 to 29211805 30 + TSS region transcription start site region 92871
Tssr92872 10 29216016 to 29216021 5 + TSS region transcription start site region 92872
Gm40620 10 29287247 to 29290497 3250 - lncRNA gene predicted gene, 40620
Gm46218 10 29297934 to 29313825 15891 - antisense lncRNA gene predicted gene, 46218
Tssr92873 10 29310988 to 29310995 7 + TSS region transcription start site region 92873
Cpgi1413 10 29313122 to 29313694 572 CpG island CpG island 1413
Tssr92874 10 29313164 to 29313221 57 + TSS region transcription start site region 92874
Echdc1 10 29313166 to 29347469 34303 + protein coding gene enoyl Coenzyme A hydratase domain containing 1
Tssr92875 10 29313227 to 29313238 11 + TSS region transcription start site region 92875
Tssr97160 10 29313375 to 29313409 34 - TSS region transcription start site region 97160
Tssr92876 10 29313525 to 29313594 69 + TSS region transcription start site region 92876
Tssr92877 10 29313621 to 29313630 9 + TSS region transcription start site region 92877
Rnf146 10 29344176 to 29362442 18266 - protein coding gene ring finger protein 146
Gm25596 10 29349585 to 29349691 106 + snRNA gene predicted gene, 25596
Gm47483 10 29351879 to 29353893 2014 - unclassified gene predicted gene, 47483
Tssr3172 10 29357770 to 29357777 7 + TSS region transcription start site region 3172
Tssr97161 10 29361346 to 29361351 5 - TSS region transcription start site region 97161
Cpgi1414 10 29361391 to 29362475 1084 CpG island CpG island 1414
Gm30698 10 29361396 to 29362623 1227 + protein coding gene predicted gene, 30698
Tssr97162 10 29362012 to 29362029 17 - TSS region transcription start site region 97162
Tssr97163 10 29362032 to 29362075 43 - TSS region transcription start site region 97163
Gm40621 10 29367610 to 29375529 7919 + lincRNA gene predicted gene, 40621
Gm24286 10 29395036 to 29395163 127 + snoRNA gene predicted gene, 24286
Gm18903 10 29426346 to 29426904 558 + pseudogene predicted gene, 18903
Rspo3 10 29453106 to 29535867 82761 - protein coding gene R-spondin 3
Gm20276 10 29490774 to 29493421 2647 - unclassified gene predicted gene, 20276
Cpgi1415 10 29533529 to 29533733 204 CpG island CpG island 1415
Cpgi1416 10 29534476 to 29534773 297 CpG island CpG island 1416
Gm48159 10 29534717 to 29614471 79754 + antisense lncRNA gene predicted gene, 48159
Tssr92878 10 29535121 to 29535122 1 + TSS region transcription start site region 92878
Cpgi1417 10 29535422 to 29536139 717 CpG island CpG island 1417
Tssr97164 10 29535787 to 29535801 14 - TSS region transcription start site region 97164
Tssr97165 10 29535807 to 29535849 42 - TSS region transcription start site region 97165
Tssr97166 10 29535857 to 29535880 23 - TSS region transcription start site region 97166
Gm46197 10 29614161 to 29614576 415 - pseudogene predicted gene, 46197
Gm46219 10 29693117 to 29702624 9507 - lncRNA gene predicted gene, 46219
Gm10275 10 29698746 to 29699379 633 - pseudogene predicted pseudogene 10275
Tssr97167 10 29699379 to 29699382 3 - TSS region transcription start site region 97167
Gm6390 10 29781411 to 29781999 588 + pseudogene predicted gene 6390
D10Mit85 10 29828023 to 29828159 136 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 85
D10Mit137 10 29983943 to 29984068 125 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 137
Gm48215 10 29984178 to 30004378 20200 - lincRNA gene predicted gene, 48215
Tssr92879 10 30010894 to 30010925 31 + TSS region transcription start site region 92879
Gm232 10 30011295 to 30017295 6000 + pseudogene predicted gene 232
D10Mit19 10 30022159 to 30022282 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 19
Gm8767 10 30084265 to 30085334 1069 - pseudogene predicted gene 8767
Gm2829 10 30179726 to 30180224 498 + pseudogene predicted gene 2829
Cenpw 10 30196009 to 30200604 4595 - protein coding gene centromere protein W
Cpgi1418 10 30200160 to 30200751 591 CpG island CpG island 1418
Tssr97168 10 30200492 to 30200542 50 - TSS region transcription start site region 97168
Tssr97169 10 30200547 to 30200573 26 - TSS region transcription start site region 97169
Tssr97170 10 30200594 to 30200605 11 - TSS region transcription start site region 97170
Gm4780 10 30373222 to 30374713 1491 + pseudogene predicted gene 4780
Gm40622 10 30450520 to 30451703 1183 + lncRNA gene predicted gene, 40622
Gm22623 10 30493942 to 30494048 106 + snRNA gene predicted gene, 22623
Gm48232 10 30511760 to 30514123 2363 - unclassified gene predicted gene, 48232
Gm48233 10 30530914 to 30532030 1116 - unclassified gene predicted gene, 48233
Trmt11 10 30534225 to 30600749 66524 - protein coding gene tRNA methyltransferase 11
Tssr97171 10 30552153 to 30552154 1 - TSS region transcription start site region 97171
Cpgi1419 10 30600147 to 30600959 812 CpG island CpG island 1419
Tssr97172 10 30600662 to 30600701 39 - TSS region transcription start site region 97172
Gm20300 10 30603195 to 30606634 3439 - lincRNA gene predicted gene, 20300
Hint3 10 30608207 to 30629401 21194 - protein coding gene histidine triad nucleotide binding protein 3
Cpgi1420 10 30618067 to 30618694 627 CpG island CpG island 1420
Tssr97173 10 30618340 to 30618395 55 - TSS region transcription start site region 97173
Tssr97174 10 30618417 to 30618428 11 - TSS region transcription start site region 97174
Tssr97175 10 30618436 to 30618473 37 - TSS region transcription start site region 97175
Tssr97176 10 30618483 to 30618494 11 - TSS region transcription start site region 97176
Tssr97177 10 30623532 to 30623537 5 - TSS region transcription start site region 97177
Tssr97178 10 30628499 to 30628505 6 - TSS region transcription start site region 97178
Tssr97179 10 30629648 to 30629653 5 - TSS region transcription start site region 97179
Ncoa7 10 30645582 to 30803360 157778 - protein coding gene nuclear receptor coactivator 7
Tssr97180 10 30647064 to 30647077 13 - TSS region transcription start site region 97180
Tssr97181 10 30655724 to 30655729 5 - TSS region transcription start site region 97181
Tssr97182 10 30655753 to 30655762 9 - TSS region transcription start site region 97182
Tssr97183 10 30655773 to 30655810 37 - TSS region transcription start site region 97183
Tssr97184 10 30655841 to 30655852 11 - TSS region transcription start site region 97184
Tssr97185 10 30655859 to 30655868 9 - TSS region transcription start site region 97185
Gm24189 10 30673134 to 30673227 93 - rRNA gene predicted gene, 24189
Tssr97186 10 30700056 to 30700061 5 - TSS region transcription start site region 97186
Gm48335 10 30740152 to 30743962 3810 - unclassified gene predicted gene, 48335
Tssr97187 10 30745845 to 30745888 43 - TSS region transcription start site region 97187
Tssr97188 10 30763557 to 30763561 4 - TSS region transcription start site region 97188
Gm48334 10 30768799 to 30769575 776 - unclassified gene predicted gene, 48334
Tssr97189 10 30771842 to 30771851 9 - TSS region transcription start site region 97189
Tssr97190 10 30771884 to 30771921 37 - TSS region transcription start site region 97190
Gm5171 10 30780857 to 30782271 1414 - pseudogene predicted gene 5171
Tssr97191 10 30793309 to 30793313 4 - TSS region transcription start site region 97191
Cpgi1421 10 30802545 to 30803739 1194 CpG island CpG island 1421
Tssr97192 10 30802854 to 30802865 11 - TSS region transcription start site region 97192
Tssr97193 10 30802884 to 30802946 62 - TSS region transcription start site region 97193
Tssr97194 10 30803075 to 30803154 79 - TSS region transcription start site region 97194
Tssr97195 10 30803285 to 30803376 91 - TSS region transcription start site region 97195
n-TEctc9 10 30811140 to 30811211 71 + tRNA gene nuclear encoded tRNA glutamic acid 9 (anticodon CTC)
Gm30618 10 30819685 to 30828396 8711 + lncRNA gene predicted gene, 30618
Hey2 10 30832359 to 30842783 10424 - protein coding gene hairy/enhancer-of-split related with YRPW motif 2
Tssr97196 10 30837892 to 30837911 19 - TSS region transcription start site region 97196
Cpgi1422 10 30842179 to 30843475 1296 CpG island CpG island 1422
Tssr97197 10 30842765 to 30842791 26 - TSS region transcription start site region 97197
Tssr97198 10 30842811 to 30842831 20 - TSS region transcription start site region 97198
Tssr97199 10 30843133 to 30843163 30 - TSS region transcription start site region 97199
Cpgi1423 10 30843946 to 30844529 583 CpG island CpG island 1423
Gm48862 10 30880517 to 30880850 333 + pseudogene predicted gene, 48862
Gm24168 10 30942379 to 30942485 106 - snRNA gene predicted gene, 24168
Tssr97200 10 30978753 to 30978755 2 - TSS region transcription start site region 97200
Gm30676 10 31029203 to 31066231 37028 - lincRNA gene predicted gene, 30676