Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:28347404-29307413

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptprk 10 28074820 to 28597397 522577 + protein coding gene protein tyrosine phosphatase, receptor type, K
Tssr92821 10 28498768 to 28498786 18 + TSS region transcription start site region 92821
Tssr92822 10 28586730 to 28586771 41 + TSS region transcription start site region 92822
Tssr92823 10 28611944 to 28611945 1 + TSS region transcription start site region 92823
Tssr92824 10 28611947 to 28611955 8 + TSS region transcription start site region 92824
Themis 10 28668360 to 28883818 215458 + protein coding gene thymocyte selection associated
Tssr92825 10 28668388 to 28668404 16 + TSS region transcription start site region 92825
Tssr92826 10 28668453 to 28668458 5 + TSS region transcription start site region 92826
Tssr92827 10 28668462 to 28668477 15 + TSS region transcription start site region 92827
Tssr92828 10 28668489 to 28668498 9 + TSS region transcription start site region 92828
Tssr92829 10 28668545 to 28668552 7 + TSS region transcription start site region 92829
Tssr92830 10 28668560 to 28668637 77 + TSS region transcription start site region 92830
Tssr92831 10 28668648 to 28668652 4 + TSS region transcription start site region 92831
Tssr92832 10 28672277 to 28672306 29 + TSS region transcription start site region 92832
A130091G23Rik 10 28681643 to 28685113 3470 unclassified gene RIKEN cDNA A130091G23 gene
Tssr3170 10 28697612 to 28697615 3 + TSS region transcription start site region 3170
Tssr92833 10 28730813 to 28730819 6 + TSS region transcription start site region 92833
Tssr92834 10 28736130 to 28736144 14 + TSS region transcription start site region 92834
Tssr92835 10 28744477 to 28744481 4 + TSS region transcription start site region 92835
Tssr3171 10 28747513 to 28747558 45 + TSS region transcription start site region 3171
A130096G17Rik 10 28748242 to 28752319 4077 unclassified gene RIKEN cDNA A130096G17 gene
Tssr92836 10 28757208 to 28757213 5 + TSS region transcription start site region 92836
Tssr92837 10 28784963 to 28784980 17 + TSS region transcription start site region 92837
Tssr92838 10 28791580 to 28791603 23 + TSS region transcription start site region 92838
Tssr92839 10 28791667 to 28791678 11 + TSS region transcription start site region 92839
Tssr92840 10 28791684 to 28791707 23 + TSS region transcription start site region 92840
Tssr92841 10 28793536 to 28793544 8 + TSS region transcription start site region 92841
Gm47834 10 28806294 to 28806756 462 - pseudogene predicted gene, 47834
Tssr92842 10 28807574 to 28807585 11 + TSS region transcription start site region 92842
Tssr92843 10 28808888 to 28808893 5 + TSS region transcription start site region 92843
Tssr92844 10 28809042 to 28809053 11 + TSS region transcription start site region 92844
Tssr92845 10 28823064 to 28823067 3 + TSS region transcription start site region 92845
Tssr92846 10 28824303 to 28824315 12 + TSS region transcription start site region 92846
Tssr92847 10 28827116 to 28827121 5 + TSS region transcription start site region 92847
Tssr92848 10 28827404 to 28827413 9 + TSS region transcription start site region 92848
Tssr92849 10 28836731 to 28836735 4 + TSS region transcription start site region 92849
Tssr92850 10 28837555 to 28837559 4 + TSS region transcription start site region 92850
Tssr92851 10 28837790 to 28837794 4 + TSS region transcription start site region 92851
Tssr92852 10 28843945 to 28843954 9 + TSS region transcription start site region 92852
Tssr92853 10 28843981 to 28843997 16 + TSS region transcription start site region 92853
Tssr92854 10 28844006 to 28844019 13 + TSS region transcription start site region 92854
Tssr92855 10 28844053 to 28844068 15 + TSS region transcription start site region 92855
A430036H03Rik 10 28857153 to 28861513 4360 unclassified gene RIKEN cDNA A430036H03 gene
Tssr92856 10 28863562 to 28863603 41 + TSS region transcription start site region 92856
Tssr92857 10 28874021 to 28874024 3 + TSS region transcription start site region 92857
Gm47835 10 28920497 to 28921142 645 + pseudogene predicted gene, 47835
4930519F09Rik 10 28921963 to 28923507 1544 - pseudogene RIKEN cDNA 4930519F09 gene
Gm22811 10 28954149 to 28954302 153 - ribozyme gene predicted gene, 22811
2310057J18Rik 10 28972288 to 28986303 14015 - protein coding gene RIKEN cDNA 2310057J18 gene
Tssr97152 10 28973964 to 28973968 4 - TSS region transcription start site region 97152
Tssr97153 10 28985314 to 28985323 9 - TSS region transcription start site region 97153
Tssr97154 10 28985379 to 28985385 6 - TSS region transcription start site region 97154
Tssr97155 10 28986209 to 28986259 50 - TSS region transcription start site region 97155
Tssr97156 10 28986280 to 28986313 33 - TSS region transcription start site region 97156
Tssr97157 10 28986331 to 28986344 13 - TSS region transcription start site region 97157
Gm18508 10 28988799 to 28990440 1641 - pseudogene predicted gene, 18508
Tssr92858 10 29030069 to 29030118 49 + TSS region transcription start site region 92858
Gm9824 10 29030128 to 29030688 560 + pseudogene predicted pseudogene 9824
Tssr92859 10 29030737 to 29030761 24 + TSS region transcription start site region 92859
Gm30619 10 29032131 to 29035452 3321 - pseudogene predicted gene, 30619
Tssr97158 10 29035459 to 29035463 4 - TSS region transcription start site region 97158
Tssr97159 10 29052236 to 29052240 4 - TSS region transcription start site region 97159
Gm9996 10 29143282 to 29144194 912 - protein coding gene predicted gene 9996
Cpgi1408 10 29143540 to 29143750 210 CpG island CpG island 1408
Tssr92860 10 29143649 to 29143720 71 + TSS region transcription start site region 92860
Tssr92861 10 29143722 to 29143732 10 + TSS region transcription start site region 92861
Soga3 10 29143839 to 29199630 55791 + protein coding gene SOGA family member 3
Cpgi1409 10 29144090 to 29144276 186 CpG island CpG island 1409
Tssr92862 10 29144113 to 29144126 13 + TSS region transcription start site region 92862
Tssr92863 10 29144129 to 29144164 35 + TSS region transcription start site region 92863
Tssr92864 10 29144218 to 29144229 11 + TSS region transcription start site region 92864
Cpgi1410 10 29146560 to 29147712 1152 CpG island CpG island 1410
Tssr92865 10 29146699 to 29146741 42 + TSS region transcription start site region 92865
Tssr92866 10 29147206 to 29147282 76 + TSS region transcription start site region 92866
Cpgi1411 10 29148103 to 29148485 382 CpG island CpG island 1411
D10Mit3 10 29152186 to 29152428 242 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 3
Mop2 10 29152428 to 9413375 -19739053 QTL morphine preference 2
Cpgi1412 10 29196496 to 29197532 1036 CpG island CpG island 1412
Gm49353 10 29198954 to 29221940 22986 + protein coding gene predicted gene, 49353
Tssr92867 10 29200597 to 29200614 17 + TSS region transcription start site region 92867
Tssr92868 10 29200815 to 29200853 38 + TSS region transcription start site region 92868
4832406H04Rik 10 29206263 to 29210920 4657 unclassified gene RIKEN cDNA 4832406H04 gene
9330159F19Rik 10 29211606 to 29230779 19173 + protein coding gene RIKEN cDNA 9330159F19 gene
Tssr92869 10 29211637 to 29211649 12 + TSS region transcription start site region 92869
Tssr92870 10 29211662 to 29211700 38 + TSS region transcription start site region 92870
Tssr92871 10 29211775 to 29211805 30 + TSS region transcription start site region 92871
Tssr92872 10 29216016 to 29216021 5 + TSS region transcription start site region 92872
Gm40620 10 29287247 to 29290497 3250 - lncRNA gene predicted gene, 40620
Gm46218 10 29297934 to 29313825 15891 - antisense lncRNA gene predicted gene, 46218