Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:25624244-29944643

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248 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igan1 10 17842565 to 29828159 11985594 QTL IgA nephropathy 1
Arrd2 10 20407439 to 27014395 6606956 QTL age-related retinal degeneration 2
Gm29571 10 25536386 to 25673343 136957 + antisense lncRNA gene predicted gene 29571
Gm47924 10 25627573 to 25628874 1301 - pseudogene predicted gene, 47924
D10Mit214 10 25649105 to 25649228 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 214
Lith21 10 25649105 to 25649228 123 QTL lithogenic gene 21
Gm36543 10 25701410 to 25707943 6533 - lincRNA gene predicted gene, 36543
Tssr97131 10 25707993 to 25708034 41 - TSS region transcription start site region 97131
4930401C15Rik 10 25779314 to 25837437 58123 - lincRNA gene RIKEN cDNA 4930401C15 gene
D10Mit125 10 25779821 to 25780097 276 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 125
D10Dcr7 10 25779988 to 25780085 97 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 7
D10Mit87 10 25820660 to 25820768 108 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 87
Gm19801 10 25831134 to 25836156 5022 + pseudogene predicted gene, 19801
Gm8681 10 25833082 to 25833696 614 - pseudogene predicted gene 8681
Gm6906 10 25836687 to 25837252 565 + pseudogene predicted gene 6906
Gm47930 10 25883673 to 25884557 884 + pseudogene predicted gene, 47930
Gm47939 10 25899279 to 25903916 4637 + lincRNA gene predicted gene, 47939
Tmem200a 10 25991182 to 26079052 87870 - protein coding gene transmembrane protein 200A
Tssr92786 10 25993620 to 25993628 8 + TSS region transcription start site region 92786
Cpgi1401 10 25993935 to 25994360 425 CpG island CpG island 1401
D10Mit4 10 26012974 to 26013106 132 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 4
Cpgi1402 10 26077864 to 26079138 1274 CpG island CpG island 1402
Gm9767 10 26078255 to 26079447 1192 + unclassified gene predicted gene 9767
Tssr97132 10 26078854 to 26078865 11 - TSS region transcription start site region 97132
Tssr97133 10 26078951 to 26078968 17 - TSS region transcription start site region 97133
Tssr97134 10 26078987 to 26079028 41 - TSS region transcription start site region 97134
Tssr92787 10 26107746 to 26107754 8 + TSS region transcription start site region 92787
Gm4739 10 26107789 to 26108421 632 + pseudogene predicted gene 4739
Samd3 10 26229707 to 26272172 42465 + protein coding gene sterile alpha motif domain containing 3
Tssr92788 10 26229743 to 26229763 20 + TSS region transcription start site region 92788
D10Mit105 10 26237135 to 26237279 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 105
L3mbtl3 10 26274468 to 26375971 101503 - protein coding gene L3MBTL3 histone methyl-lysine binding protein
Tssr97135 10 26338137 to 26338159 22 - TSS region transcription start site region 97135
Tssr97136 10 26343509 to 26343510 1 - TSS region transcription start site region 97136
Gm27754 10 26356732 to 26356857 125 - miRNA gene predicted gene, 27754
Gm23757 10 26357947 to 26358046 99 + rRNA gene predicted gene, 23757
Cpgi1403 10 26373483 to 26376341 2858 CpG island CpG island 1403
Tssr97137 10 26374070 to 26374088 18 - TSS region transcription start site region 97137
Tssr3168 10 26374972 to 26374975 3 + TSS region transcription start site region 3168
Tssr97138 10 26375962 to 26376002 40 - TSS region transcription start site region 97138
Gm5649 10 26383144 to 26384094 950 - pseudogene predicted gene 5649
Gm30034 10 26493098 to 26498747 5649 + lincRNA gene predicted gene, 30034
Tssr97139 10 26544883 to 26544888 5 - TSS region transcription start site region 97139
D10Mit250 10 26568637 to 26568761 124 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 250
Tssr92789 10 26608094 to 26608095 1 + TSS region transcription start site region 92789
Gm48864 10 26626547 to 26629075 2528 + pseudogene predicted gene, 48864
Gm8709 10 26673601 to 26674612 1011 - pseudogene predicted gene 8709
Tssr92790 10 26695292 to 26695328 36 + TSS region transcription start site region 92790
Cpgi1404 10 26695364 to 26695812 448 CpG island CpG island 1404
Gm48893 10 26695574 to 26742860 47286 + lincRNA gene predicted gene, 48893
Gm48891 10 26741426 to 26741563 137 - pseudogene predicted gene, 48891
Tssr97140 10 26741562 to 26741579 17 - TSS region transcription start site region 97140
Gm48892 10 26742079 to 26742556 477 - pseudogene predicted gene, 48892
Arhgap18 10 26772143 to 26918648 146505 + protein coding gene Rho GTPase activating protein 18
Tssr97141 10 26772368 to 26772402 34 - TSS region transcription start site region 97141
Tssr92791 10 26772488 to 26772515 27 + TSS region transcription start site region 92791
Tssr92792 10 26772523 to 26772569 46 + TSS region transcription start site region 92792
Tssr92793 10 26778502 to 26778508 6 + TSS region transcription start site region 92793
Tssr92794 10 26784411 to 26784415 4 + TSS region transcription start site region 92794
Tssr92795 10 26797932 to 26797962 30 + TSS region transcription start site region 92795
Tssr92796 10 26799186 to 26799219 33 + TSS region transcription start site region 92796
Tssr92797 10 26799753 to 26799765 12 + TSS region transcription start site region 92797
Tssr92798 10 26801399 to 26801446 47 + TSS region transcription start site region 92798
Tssr92799 10 26801524 to 26801532 8 + TSS region transcription start site region 92799
Tssr92800 10 26809728 to 26809734 6 + TSS region transcription start site region 92800
Tssr92801 10 26822560 to 26822579 19 + TSS region transcription start site region 92801
Tssr92802 10 26827644 to 26827648 4 + TSS region transcription start site region 92802
Tssr92803 10 26871739 to 26871754 15 + TSS region transcription start site region 92803
Tssr92804 10 26880704 to 26880734 30 + TSS region transcription start site region 92804
Tssr92805 10 26881207 to 26881213 6 + TSS region transcription start site region 92805
Tssr92806 10 26885336 to 26885341 5 + TSS region transcription start site region 92806
Tssr92807 10 26892067 to 26892088 21 + TSS region transcription start site region 92807
Tssr92808 10 26892887 to 26892900 13 + TSS region transcription start site region 92808
Tssr92809 10 26895252 to 26895263 11 + TSS region transcription start site region 92809
Tssr92810 10 26917295 to 26917306 11 + TSS region transcription start site region 92810
Tssr92811 10 26917433 to 26917446 13 + TSS region transcription start site region 92811
Gm48084 10 26949740 to 26982036 32296 + antisense lncRNA gene predicted gene, 48084
Gm30534 10 26966085 to 26966291 206 + protein coding gene predicted gene, 30534
Lama2 10 26981285 to 27617191 635906 - protein coding gene laminin, alpha 2
Gm40618 10 26982190 to 26983043 853 + lncRNA gene predicted gene, 40618
Alcp16 10 27014268 to 27014395 127 QTL alcohol preference locus 16, female specific
Alcp15 10 27014268 to 27014395 127 QTL alcohol preference locus 15, male specific
D10Mit126 10 27014268 to 27014395 127 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 126
Pas11 10 27014268 to 27014395 127 QTL pulmonary adenoma susceptibility 11
Psrs1 10 27014268 to 46844387 19830119 QTL psoriasis susceptibility 1
D10Mit126.1 10 27014424 to 27014545 121 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 126.1
Tssr3169 10 27127465 to 27127495 30 - TSS region transcription start site region 3169
Tssr97142 10 27134011 to 27134015 4 - TSS region transcription start site region 97142
Gm17917 10 27280725 to 27281670 945 + pseudogene predicted gene, 17917
Gm48083 10 27293295 to 27293659 364 + pseudogene predicted gene, 48083
4930579H20Rik 10 27389866 to 27397225 7359 + antisense lncRNA gene RIKEN cDNA 4930579H20 gene
Gm23353 10 27452289 to 27452360 71 + snoRNA gene predicted gene, 23353
Tssr97143 10 27525964 to 27525969 5 - TSS region transcription start site region 97143
Gm36962 10 27613568 to 27615328 1760 - unclassified gene predicted gene, 36962
Cpgi1405 10 27616657 to 27616844 187 CpG island CpG island 1405
Tssr97144 10 27616805 to 27616814 9 - TSS region transcription start site region 97144
Tssr97145 10 27616815 to 27616825 10 - TSS region transcription start site region 97145
Tssr97146 10 27616831 to 27616891 60 - TSS region transcription start site region 97146
Tssr97147 10 27616895 to 27616904 9 - TSS region transcription start site region 97147
Tssr97148 10 27616929 to 27616937 8 - TSS region transcription start site region 97148
Tssr97149 10 27617019 to 27617047 28 - TSS region transcription start site region 97149
Gm30165 10 27631982 to 27671766 39784 - lincRNA gene predicted gene, 30165
Gm30228 10 27745853 to 27809696 63843 - lincRNA gene predicted gene, 30228
Gm18041 10 27778274 to 27778891 617 + pseudogene predicted gene, 18041
Gm47696 10 27784244 to 27784643 399 - pseudogene predicted gene, 47696
Gm18972 10 27870091 to 27870720 629 + pseudogene predicted gene, 18972
D10Mit251 10 27927637 to 27927752 115 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 251
Tssr92812 10 27936328 to 27936333 5 + TSS region transcription start site region 92812
Gm10145 10 27936364 to 27936825 461 + pseudogene predicted gene 10145
Tssr97150 10 27991076 to 27991114 38 - TSS region transcription start site region 97150
Tssr97151 10 28013357 to 28013399 42 - TSS region transcription start site region 97151
Tssr92813 10 28013492 to 28013502 10 + TSS region transcription start site region 92813
Gm18507 10 28065666 to 28066190 524 - pseudogene predicted gene, 18507
Cpgi1406 10 28074212 to 28075576 1364 CpG island CpG island 1406
Tssr92814 10 28074813 to 28074873 60 + TSS region transcription start site region 92814
Ptprk 10 28074820 to 28597397 522577 + protein coding gene protein tyrosine phosphatase, receptor type, K
Tssr92815 10 28074916 to 28074927 11 + TSS region transcription start site region 92815
Tssr92816 10 28074928 to 28074937 9 + TSS region transcription start site region 92816
Cpgi1407 10 28075831 to 28076539 708 CpG island CpG island 1407
Tssr92817 10 28089230 to 28089240 10 + TSS region transcription start site region 92817
Tssr92818 10 28185333 to 28185337 4 + TSS region transcription start site region 92818
Gm22370 10 28214039 to 28214121 82 - miRNA gene predicted gene, 22370
Tssr92819 10 28247786 to 28247791 5 + TSS region transcription start site region 92819
Tssr92820 10 28277275 to 28277278 3 + TSS region transcription start site region 92820
Tssr92821 10 28498768 to 28498786 18 + TSS region transcription start site region 92821
Tssr92822 10 28586730 to 28586771 41 + TSS region transcription start site region 92822
Tssr92823 10 28611944 to 28611945 1 + TSS region transcription start site region 92823
Tssr92824 10 28611947 to 28611955 8 + TSS region transcription start site region 92824
Themis 10 28668360 to 28883818 215458 + protein coding gene thymocyte selection associated
Tssr92825 10 28668388 to 28668404 16 + TSS region transcription start site region 92825
Tssr92826 10 28668453 to 28668458 5 + TSS region transcription start site region 92826
Tssr92827 10 28668462 to 28668477 15 + TSS region transcription start site region 92827
Tssr92828 10 28668489 to 28668498 9 + TSS region transcription start site region 92828
Tssr92829 10 28668545 to 28668552 7 + TSS region transcription start site region 92829
Tssr92830 10 28668560 to 28668637 77 + TSS region transcription start site region 92830
Tssr92831 10 28668648 to 28668652 4 + TSS region transcription start site region 92831
Tssr92832 10 28672277 to 28672306 29 + TSS region transcription start site region 92832
A130091G23Rik 10 28681643 to 28685113 3470 unclassified gene RIKEN cDNA A130091G23 gene
Tssr3170 10 28697612 to 28697615 3 + TSS region transcription start site region 3170
Tssr92833 10 28730813 to 28730819 6 + TSS region transcription start site region 92833
Tssr92834 10 28736130 to 28736144 14 + TSS region transcription start site region 92834
Tssr92835 10 28744477 to 28744481 4 + TSS region transcription start site region 92835
Tssr3171 10 28747513 to 28747558 45 + TSS region transcription start site region 3171
A130096G17Rik 10 28748242 to 28752319 4077 unclassified gene RIKEN cDNA A130096G17 gene
Tssr92836 10 28757208 to 28757213 5 + TSS region transcription start site region 92836
Tssr92837 10 28784963 to 28784980 17 + TSS region transcription start site region 92837
Tssr92838 10 28791580 to 28791603 23 + TSS region transcription start site region 92838
Tssr92839 10 28791667 to 28791678 11 + TSS region transcription start site region 92839
Tssr92840 10 28791684 to 28791707 23 + TSS region transcription start site region 92840
Tssr92841 10 28793536 to 28793544 8 + TSS region transcription start site region 92841
Gm47834 10 28806294 to 28806756 462 - pseudogene predicted gene, 47834
Tssr92842 10 28807574 to 28807585 11 + TSS region transcription start site region 92842
Tssr92843 10 28808888 to 28808893 5 + TSS region transcription start site region 92843
Tssr92844 10 28809042 to 28809053 11 + TSS region transcription start site region 92844
Tssr92845 10 28823064 to 28823067 3 + TSS region transcription start site region 92845
Tssr92846 10 28824303 to 28824315 12 + TSS region transcription start site region 92846
Tssr92847 10 28827116 to 28827121 5 + TSS region transcription start site region 92847
Tssr92848 10 28827404 to 28827413 9 + TSS region transcription start site region 92848
Tssr92849 10 28836731 to 28836735 4 + TSS region transcription start site region 92849
Tssr92850 10 28837555 to 28837559 4 + TSS region transcription start site region 92850
Tssr92851 10 28837790 to 28837794 4 + TSS region transcription start site region 92851
Tssr92852 10 28843945 to 28843954 9 + TSS region transcription start site region 92852
Tssr92853 10 28843981 to 28843997 16 + TSS region transcription start site region 92853
Tssr92854 10 28844006 to 28844019 13 + TSS region transcription start site region 92854
Tssr92855 10 28844053 to 28844068 15 + TSS region transcription start site region 92855
A430036H03Rik 10 28857153 to 28861513 4360 unclassified gene RIKEN cDNA A430036H03 gene
Tssr92856 10 28863562 to 28863603 41 + TSS region transcription start site region 92856
Tssr92857 10 28874021 to 28874024 3 + TSS region transcription start site region 92857
Gm47835 10 28920497 to 28921142 645 + pseudogene predicted gene, 47835
4930519F09Rik 10 28921963 to 28923507 1544 - pseudogene RIKEN cDNA 4930519F09 gene
Gm22811 10 28954149 to 28954302 153 - ribozyme gene predicted gene, 22811
2310057J18Rik 10 28972288 to 28986303 14015 - protein coding gene RIKEN cDNA 2310057J18 gene
Tssr97152 10 28973964 to 28973968 4 - TSS region transcription start site region 97152
Tssr97153 10 28985314 to 28985323 9 - TSS region transcription start site region 97153
Tssr97154 10 28985379 to 28985385 6 - TSS region transcription start site region 97154
Tssr97155 10 28986209 to 28986259 50 - TSS region transcription start site region 97155
Tssr97156 10 28986280 to 28986313 33 - TSS region transcription start site region 97156
Tssr97157 10 28986331 to 28986344 13 - TSS region transcription start site region 97157
Gm18508 10 28988799 to 28990440 1641 - pseudogene predicted gene, 18508
Tssr92858 10 29030069 to 29030118 49 + TSS region transcription start site region 92858
Gm9824 10 29030128 to 29030688 560 + pseudogene predicted pseudogene 9824
Tssr92859 10 29030737 to 29030761 24 + TSS region transcription start site region 92859
Gm30619 10 29032131 to 29035452 3321 - pseudogene predicted gene, 30619
Tssr97158 10 29035459 to 29035463 4 - TSS region transcription start site region 97158
Tssr97159 10 29052236 to 29052240 4 - TSS region transcription start site region 97159
Gm9996 10 29143282 to 29144194 912 - protein coding gene predicted gene 9996
Cpgi1408 10 29143540 to 29143750 210 CpG island CpG island 1408
Tssr92860 10 29143649 to 29143720 71 + TSS region transcription start site region 92860
Tssr92861 10 29143722 to 29143732 10 + TSS region transcription start site region 92861
Soga3 10 29143839 to 29199630 55791 + protein coding gene SOGA family member 3
Cpgi1409 10 29144090 to 29144276 186 CpG island CpG island 1409
Tssr92862 10 29144113 to 29144126 13 + TSS region transcription start site region 92862
Tssr92863 10 29144129 to 29144164 35 + TSS region transcription start site region 92863
Tssr92864 10 29144218 to 29144229 11 + TSS region transcription start site region 92864
Cpgi1410 10 29146560 to 29147712 1152 CpG island CpG island 1410
Tssr92865 10 29146699 to 29146741 42 + TSS region transcription start site region 92865
Tssr92866 10 29147206 to 29147282 76 + TSS region transcription start site region 92866
Cpgi1411 10 29148103 to 29148485 382 CpG island CpG island 1411
D10Mit3 10 29152186 to 29152428 242 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 3
Mop2 10 29152428 to 9413375 -19739053 QTL morphine preference 2