Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:25477433-28357446

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arrd2 10 20407439 to 27014395 6606956 QTL age-related retinal degeneration 2
Epb41l2 10 25359798 to 25523519 163721 + protein coding gene erythrocyte membrane protein band 4.1 like 2
Tssr92781 10 25489583 to 25489595 12 + TSS region transcription start site region 92781
Tssr92782 10 25489634 to 25489653 19 + TSS region transcription start site region 92782
Tssr92783 10 25489696 to 25489724 28 + TSS region transcription start site region 92783
Tssr92784 10 25498590 to 25498602 12 + TSS region transcription start site region 92784
Smlr1 10 25527943 to 25536267 8324 - protein coding gene small leucine-rich protein 1
Tssr97128 10 25536091 to 25536111 20 - TSS region transcription start site region 97128
Tssr97129 10 25536114 to 25536155 41 - TSS region transcription start site region 97129
Tssr92785 10 25536365 to 25536396 31 + TSS region transcription start site region 92785
Gm29571 10 25536386 to 25673343 136957 + antisense lncRNA gene predicted gene 29571
Gm36908 10 25615632 to 25621563 5931 - lincRNA gene predicted gene, 36908
Tssr97130 10 25621555 to 25621568 13 - TSS region transcription start site region 97130
Gm47924 10 25627573 to 25628874 1301 - pseudogene predicted gene, 47924
Lith21 10 25649105 to 25649228 123 QTL lithogenic gene 21
D10Mit214 10 25649105 to 25649228 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 214
Gm36543 10 25701410 to 25707943 6533 - lincRNA gene predicted gene, 36543
Tssr97131 10 25707993 to 25708034 41 - TSS region transcription start site region 97131
4930401C15Rik 10 25779314 to 25837437 58123 - lincRNA gene RIKEN cDNA 4930401C15 gene
D10Mit125 10 25779821 to 25780097 276 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 125
D10Dcr7 10 25779988 to 25780085 97 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 7
D10Mit87 10 25820660 to 25820768 108 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 87
Gm19801 10 25831134 to 25836156 5022 + pseudogene predicted gene, 19801
Gm8681 10 25833082 to 25833696 614 - pseudogene predicted gene 8681
Gm6906 10 25836687 to 25837252 565 + pseudogene predicted gene 6906
Gm47930 10 25883673 to 25884557 884 + pseudogene predicted gene, 47930
Gm47939 10 25899279 to 25903916 4637 + lincRNA gene predicted gene, 47939
Tmem200a 10 25991182 to 26079052 87870 - protein coding gene transmembrane protein 200A
Tssr92786 10 25993620 to 25993628 8 + TSS region transcription start site region 92786
Cpgi1401 10 25993935 to 25994360 425 CpG island CpG island 1401
D10Mit4 10 26012974 to 26013106 132 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 4
Cpgi1402 10 26077864 to 26079138 1274 CpG island CpG island 1402
Gm9767 10 26078255 to 26079447 1192 + unclassified gene predicted gene 9767
Tssr97132 10 26078854 to 26078865 11 - TSS region transcription start site region 97132
Tssr97133 10 26078951 to 26078968 17 - TSS region transcription start site region 97133
Tssr97134 10 26078987 to 26079028 41 - TSS region transcription start site region 97134
Tssr92787 10 26107746 to 26107754 8 + TSS region transcription start site region 92787
Gm4739 10 26107789 to 26108421 632 + pseudogene predicted gene 4739
Samd3 10 26229707 to 26272172 42465 + protein coding gene sterile alpha motif domain containing 3
Tssr92788 10 26229743 to 26229763 20 + TSS region transcription start site region 92788
D10Mit105 10 26237135 to 26237279 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 105
L3mbtl3 10 26274468 to 26375971 101503 - protein coding gene L3MBTL3 histone methyl-lysine binding protein
Tssr97135 10 26338137 to 26338159 22 - TSS region transcription start site region 97135
Tssr97136 10 26343509 to 26343510 1 - TSS region transcription start site region 97136
Gm27754 10 26356732 to 26356857 125 - miRNA gene predicted gene, 27754
Gm23757 10 26357947 to 26358046 99 + rRNA gene predicted gene, 23757
Cpgi1403 10 26373483 to 26376341 2858 CpG island CpG island 1403
Tssr97137 10 26374070 to 26374088 18 - TSS region transcription start site region 97137
Tssr3168 10 26374972 to 26374975 3 + TSS region transcription start site region 3168
Tssr97138 10 26375962 to 26376002 40 - TSS region transcription start site region 97138
Gm5649 10 26383144 to 26384094 950 - pseudogene predicted gene 5649
Gm30034 10 26493098 to 26498747 5649 + lincRNA gene predicted gene, 30034
Tssr97139 10 26544883 to 26544888 5 - TSS region transcription start site region 97139
D10Mit250 10 26568637 to 26568761 124 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 250
Tssr92789 10 26608094 to 26608095 1 + TSS region transcription start site region 92789
Gm48864 10 26626547 to 26629075 2528 + pseudogene predicted gene, 48864
Gm8709 10 26673601 to 26674612 1011 - pseudogene predicted gene 8709
Tssr92790 10 26695292 to 26695328 36 + TSS region transcription start site region 92790
Cpgi1404 10 26695364 to 26695812 448 CpG island CpG island 1404
Gm48893 10 26695574 to 26742860 47286 + lincRNA gene predicted gene, 48893
Gm48891 10 26741426 to 26741563 137 - pseudogene predicted gene, 48891
Tssr97140 10 26741562 to 26741579 17 - TSS region transcription start site region 97140
Gm48892 10 26742079 to 26742556 477 - pseudogene predicted gene, 48892
Arhgap18 10 26772143 to 26918648 146505 + protein coding gene Rho GTPase activating protein 18
Tssr97141 10 26772368 to 26772402 34 - TSS region transcription start site region 97141
Tssr92791 10 26772488 to 26772515 27 + TSS region transcription start site region 92791
Tssr92792 10 26772523 to 26772569 46 + TSS region transcription start site region 92792
Tssr92793 10 26778502 to 26778508 6 + TSS region transcription start site region 92793
Tssr92794 10 26784411 to 26784415 4 + TSS region transcription start site region 92794
Tssr92795 10 26797932 to 26797962 30 + TSS region transcription start site region 92795
Tssr92796 10 26799186 to 26799219 33 + TSS region transcription start site region 92796
Tssr92797 10 26799753 to 26799765 12 + TSS region transcription start site region 92797
Tssr92798 10 26801399 to 26801446 47 + TSS region transcription start site region 92798
Tssr92799 10 26801524 to 26801532 8 + TSS region transcription start site region 92799
Tssr92800 10 26809728 to 26809734 6 + TSS region transcription start site region 92800
Tssr92801 10 26822560 to 26822579 19 + TSS region transcription start site region 92801
Tssr92802 10 26827644 to 26827648 4 + TSS region transcription start site region 92802
Tssr92803 10 26871739 to 26871754 15 + TSS region transcription start site region 92803
Tssr92804 10 26880704 to 26880734 30 + TSS region transcription start site region 92804
Tssr92805 10 26881207 to 26881213 6 + TSS region transcription start site region 92805
Tssr92806 10 26885336 to 26885341 5 + TSS region transcription start site region 92806
Tssr92807 10 26892067 to 26892088 21 + TSS region transcription start site region 92807
Tssr92808 10 26892887 to 26892900 13 + TSS region transcription start site region 92808
Tssr92809 10 26895252 to 26895263 11 + TSS region transcription start site region 92809
Tssr92810 10 26917295 to 26917306 11 + TSS region transcription start site region 92810
Tssr92811 10 26917433 to 26917446 13 + TSS region transcription start site region 92811
Gm48084 10 26949740 to 26982036 32296 + antisense lncRNA gene predicted gene, 48084
Gm30534 10 26966085 to 26966291 206 + protein coding gene predicted gene, 30534
Lama2 10 26981285 to 27617191 635906 - protein coding gene laminin, alpha 2
Gm40618 10 26982190 to 26983043 853 + lncRNA gene predicted gene, 40618
Pas11 10 27014268 to 27014395 127 QTL pulmonary adenoma susceptibility 11
Psrs1 10 27014268 to 46844387 19830119 QTL psoriasis susceptibility 1
Alcp15 10 27014268 to 27014395 127 QTL alcohol preference locus 15, male specific
Alcp16 10 27014268 to 27014395 127 QTL alcohol preference locus 16, female specific
D10Mit126 10 27014268 to 27014395 127 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 126
D10Mit126.1 10 27014424 to 27014545 121 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 126.1
Tssr3169 10 27127465 to 27127495 30 - TSS region transcription start site region 3169
Tssr97142 10 27134011 to 27134015 4 - TSS region transcription start site region 97142
Gm17917 10 27280725 to 27281670 945 + pseudogene predicted gene, 17917
Gm48083 10 27293295 to 27293659 364 + pseudogene predicted gene, 48083
4930579H20Rik 10 27389866 to 27397225 7359 + antisense lncRNA gene RIKEN cDNA 4930579H20 gene
Gm23353 10 27452289 to 27452360 71 + snoRNA gene predicted gene, 23353
Tssr97143 10 27525964 to 27525969 5 - TSS region transcription start site region 97143
Gm36962 10 27613568 to 27615328 1760 - unclassified gene predicted gene, 36962
Cpgi1405 10 27616657 to 27616844 187 CpG island CpG island 1405
Tssr97144 10 27616805 to 27616814 9 - TSS region transcription start site region 97144
Tssr97145 10 27616815 to 27616825 10 - TSS region transcription start site region 97145
Tssr97146 10 27616831 to 27616891 60 - TSS region transcription start site region 97146
Tssr97147 10 27616895 to 27616904 9 - TSS region transcription start site region 97147
Tssr97148 10 27616929 to 27616937 8 - TSS region transcription start site region 97148
Tssr97149 10 27617019 to 27617047 28 - TSS region transcription start site region 97149
Gm30165 10 27631982 to 27671766 39784 - lincRNA gene predicted gene, 30165
Gm30228 10 27745853 to 27809696 63843 - lincRNA gene predicted gene, 30228
Gm18041 10 27778274 to 27778891 617 + pseudogene predicted gene, 18041
Gm47696 10 27784244 to 27784643 399 - pseudogene predicted gene, 47696
Gm18972 10 27870091 to 27870720 629 + pseudogene predicted gene, 18972
D10Mit251 10 27927637 to 27927752 115 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 251
Tssr92812 10 27936328 to 27936333 5 + TSS region transcription start site region 92812
Gm10145 10 27936364 to 27936825 461 + pseudogene predicted gene 10145
Tssr97150 10 27991076 to 27991114 38 - TSS region transcription start site region 97150
Tssr97151 10 28013357 to 28013399 42 - TSS region transcription start site region 97151
Tssr92813 10 28013492 to 28013502 10 + TSS region transcription start site region 92813
Gm18507 10 28065666 to 28066190 524 - pseudogene predicted gene, 18507
Cpgi1406 10 28074212 to 28075576 1364 CpG island CpG island 1406
Tssr92814 10 28074813 to 28074873 60 + TSS region transcription start site region 92814
Ptprk 10 28074820 to 28597397 522577 + protein coding gene protein tyrosine phosphatase, receptor type, K
Tssr92815 10 28074916 to 28074927 11 + TSS region transcription start site region 92815
Tssr92816 10 28074928 to 28074937 9 + TSS region transcription start site region 92816
Cpgi1407 10 28075831 to 28076539 708 CpG island CpG island 1407
Tssr92817 10 28089230 to 28089240 10 + TSS region transcription start site region 92817
Tssr92818 10 28185333 to 28185337 4 + TSS region transcription start site region 92818
Gm22370 10 28214039 to 28214121 82 - miRNA gene predicted gene, 22370
Tssr92819 10 28247786 to 28247791 5 + TSS region transcription start site region 92819
Tssr92820 10 28277275 to 28277278 3 + TSS region transcription start site region 92820