Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:25346182-26724052

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi1400 10 25359421 to 25360632 1211 CpG island CpG island 1400
Epb41l2 10 25359798 to 25523519 163721 + protein coding gene erythrocyte membrane protein band 4.1 like 2
Tssr92759 10 25359820 to 25359844 24 + TSS region transcription start site region 92759
Tssr92760 10 25359850 to 25359887 37 + TSS region transcription start site region 92760
Tssr92761 10 25375199 to 25375234 35 + TSS region transcription start site region 92761
Tssr92762 10 25375238 to 25375249 11 + TSS region transcription start site region 92762
Tssr92763 10 25375250 to 25375265 15 + TSS region transcription start site region 92763
Tssr92764 10 25377578 to 25377594 16 + TSS region transcription start site region 92764
Tssr92765 10 25383832 to 25383851 19 + TSS region transcription start site region 92765
Tssr92766 10 25398593 to 25398604 11 + TSS region transcription start site region 92766
Tssr92767 10 25404566 to 25404570 4 + TSS region transcription start site region 92767
Tssr92768 10 25408346 to 25408395 49 + TSS region transcription start site region 92768
Tssr92769 10 25414588 to 25414590 2 + TSS region transcription start site region 92769
Gm47830 10 25415354 to 25416185 831 - pseudogene predicted gene, 47830
Tssr92770 10 25425880 to 25425920 40 + TSS region transcription start site region 92770
Tssr92771 10 25432476 to 25432517 41 + TSS region transcription start site region 92771
Tssr92772 10 25432576 to 25432619 43 + TSS region transcription start site region 92772
Tssr92773 10 25436919 to 25436930 11 + TSS region transcription start site region 92773
Tssr92774 10 25436965 to 25437002 37 + TSS region transcription start site region 92774
Tssr92775 10 25437007 to 25437032 25 + TSS region transcription start site region 92775
Tssr92776 10 25441391 to 25441408 17 + TSS region transcription start site region 92776
Tssr92777 10 25441411 to 25441450 39 + TSS region transcription start site region 92777
Tssr92778 10 25441795 to 25441810 15 + TSS region transcription start site region 92778
Tssr92779 10 25473077 to 25473082 5 + TSS region transcription start site region 92779
Tssr92780 10 25476248 to 25476253 5 + TSS region transcription start site region 92780
Tssr92781 10 25489583 to 25489595 12 + TSS region transcription start site region 92781
Tssr92782 10 25489634 to 25489653 19 + TSS region transcription start site region 92782
Tssr92783 10 25489696 to 25489724 28 + TSS region transcription start site region 92783
Tssr92784 10 25498590 to 25498602 12 + TSS region transcription start site region 92784
Smlr1 10 25527943 to 25536267 8324 - protein coding gene small leucine-rich protein 1
Tssr97128 10 25536091 to 25536111 20 - TSS region transcription start site region 97128
Tssr97129 10 25536114 to 25536155 41 - TSS region transcription start site region 97129
Tssr92785 10 25536365 to 25536396 31 + TSS region transcription start site region 92785
Gm29571 10 25536386 to 25673343 136957 + antisense lncRNA gene predicted gene 29571
Gm36908 10 25615632 to 25621563 5931 - lincRNA gene predicted gene, 36908
Tssr97130 10 25621555 to 25621568 13 - TSS region transcription start site region 97130
Gm47924 10 25627573 to 25628874 1301 - pseudogene predicted gene, 47924
Lith21 10 25649105 to 25649228 123 QTL lithogenic gene 21
D10Mit214 10 25649105 to 25649228 123 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 214
Gm36543 10 25701410 to 25707943 6533 - lincRNA gene predicted gene, 36543
Tssr97131 10 25707993 to 25708034 41 - TSS region transcription start site region 97131
4930401C15Rik 10 25779314 to 25837437 58123 - lincRNA gene RIKEN cDNA 4930401C15 gene
D10Mit125 10 25779821 to 25780097 276 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 125
D10Dcr7 10 25779988 to 25780085 97 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 7
D10Mit87 10 25820660 to 25820768 108 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 87
Gm19801 10 25831134 to 25836156 5022 + pseudogene predicted gene, 19801
Gm8681 10 25833082 to 25833696 614 - pseudogene predicted gene 8681
Gm6906 10 25836687 to 25837252 565 + pseudogene predicted gene 6906
Gm47930 10 25883673 to 25884557 884 + pseudogene predicted gene, 47930
Gm47939 10 25899279 to 25903916 4637 + lincRNA gene predicted gene, 47939
Tmem200a 10 25991182 to 26079052 87870 - protein coding gene transmembrane protein 200A
Tssr92786 10 25993620 to 25993628 8 + TSS region transcription start site region 92786
Cpgi1401 10 25993935 to 25994360 425 CpG island CpG island 1401
D10Mit4 10 26012974 to 26013106 132 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 4
Cpgi1402 10 26077864 to 26079138 1274 CpG island CpG island 1402
Gm9767 10 26078255 to 26079447 1192 + unclassified gene predicted gene 9767
Tssr97132 10 26078854 to 26078865 11 - TSS region transcription start site region 97132
Tssr97133 10 26078951 to 26078968 17 - TSS region transcription start site region 97133
Tssr97134 10 26078987 to 26079028 41 - TSS region transcription start site region 97134
Tssr92787 10 26107746 to 26107754 8 + TSS region transcription start site region 92787
Gm4739 10 26107789 to 26108421 632 + pseudogene predicted gene 4739
Samd3 10 26229707 to 26272172 42465 + protein coding gene sterile alpha motif domain containing 3
Tssr92788 10 26229743 to 26229763 20 + TSS region transcription start site region 92788
D10Mit105 10 26237135 to 26237279 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 105
L3mbtl3 10 26274468 to 26375971 101503 - protein coding gene L3MBTL3 histone methyl-lysine binding protein
Tssr97135 10 26338137 to 26338159 22 - TSS region transcription start site region 97135
Tssr97136 10 26343509 to 26343510 1 - TSS region transcription start site region 97136
Gm27754 10 26356732 to 26356857 125 - miRNA gene predicted gene, 27754
Gm23757 10 26357947 to 26358046 99 + rRNA gene predicted gene, 23757
Cpgi1403 10 26373483 to 26376341 2858 CpG island CpG island 1403
Tssr97137 10 26374070 to 26374088 18 - TSS region transcription start site region 97137
Tssr3168 10 26374972 to 26374975 3 + TSS region transcription start site region 3168
Tssr97138 10 26375962 to 26376002 40 - TSS region transcription start site region 97138
Gm5649 10 26383144 to 26384094 950 - pseudogene predicted gene 5649
Gm30034 10 26493098 to 26498747 5649 + lincRNA gene predicted gene, 30034
Tssr97139 10 26544883 to 26544888 5 - TSS region transcription start site region 97139
D10Mit250 10 26568637 to 26568761 124 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 250
Tssr92789 10 26608094 to 26608095 1 + TSS region transcription start site region 92789
Gm48864 10 26626547 to 26629075 2528 + pseudogene predicted gene, 48864
Gm8709 10 26673601 to 26674612 1011 - pseudogene predicted gene 8709
Tssr92790 10 26695292 to 26695328 36 + TSS region transcription start site region 92790
Cpgi1404 10 26695364 to 26695812 448 CpG island CpG island 1404
Gm48893 10 26695574 to 26742860 47286 + lincRNA gene predicted gene, 48893