Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:23271749-24431774

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eya4 10 23102963 to 23350786 247823 - protein coding gene EYA transcriptional coactivator and phosphatase 4
Cpgi1383 10 23348384 to 23348781 397 CpG island CpG island 1383
Cpgi1384 10 23349165 to 23350855 1690 CpG island CpG island 1384
Tssr97054 10 23349860 to 23349881 21 - TSS region transcription start site region 97054
Tssr97055 10 23349892 to 23349919 27 - TSS region transcription start site region 97055
Tssr97056 10 23350191 to 23350251 60 - TSS region transcription start site region 97056
Tssr3165 10 23350329 to 23350342 13 - TSS region transcription start site region 3165
Tssr97057 10 23350808 to 23350832 24 - TSS region transcription start site region 97057
Gm47843 10 23573020 to 23609431 36411 - lincRNA gene predicted gene, 47843
4930520K02Rik 10 23611263 to 23622148 10885 - lincRNA gene RIKEN cDNA 4930520K02 gene
Gm35291 10 23698535 to 23711487 12952 - lncRNA gene predicted gene, 35291
n-TWcca1 10 23777083 to 23777154 71 - tRNA gene nuclear encoded tRNA trytophan 1 (anticodon CCA)
Rps12 10 23785183 to 23787209 2026 - protein coding gene ribosomal protein S12
Snora33 10 23785347 to 23785451 104 - snoRNA gene small nucleolar RNA, H/ACA box 33
Snord100 10 23785754 to 23785821 67 - snoRNA gene small nucleolar RNA, C/D box 100
Tssr97058 10 23785816 to 23785821 5 - TSS region transcription start site region 97058
Gm23130 10 23786470 to 23786543 73 - snoRNA gene predicted gene, 23130
Cpgi1385 10 23786615 to 23787870 1255 CpG island CpG island 1385
Tssr97059 10 23787050 to 23787074 24 - TSS region transcription start site region 97059
Tssr97060 10 23787143 to 23787160 17 - TSS region transcription start site region 97060
Tssr97061 10 23787195 to 23787206 11 - TSS region transcription start site region 97061
Tssr97062 10 23787215 to 23787252 37 - TSS region transcription start site region 97062
Tssr92707 10 23787416 to 23787437 21 + TSS region transcription start site region 92707
D13Sfk8 10 23788193 to 23788335 142 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 8
D13Sfk10 10 23792164 to 23792316 152 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 10
Tssr92708 10 23796645 to 23796660 15 + TSS region transcription start site region 92708
Cpgi1386 10 23796787 to 23797461 674 CpG island CpG island 1386
Tssr92709 10 23796946 to 23797051 105 + TSS region transcription start site region 92709
Slc18b1 10 23796986 to 23827968 30982 + protein coding gene solute carrier family 18, subfamily B, member 1
Tssr92710 10 23797052 to 23797070 18 + TSS region transcription start site region 92710
D13Sfk9 10 23822528 to 23822673 145 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 9
Tssr92711 10 23851427 to 23851453 26 + TSS region transcription start site region 92711
Tssr92712 10 23851454 to 23851489 35 + TSS region transcription start site region 92712
Vnn3 10 23851462 to 23869843 18381 + protein coding gene vanin 3
Tssr92713 10 23851495 to 23851507 12 + TSS region transcription start site region 92713
Tssr92714 10 23851522 to 23851533 11 + TSS region transcription start site region 92714
Tssr92715 10 23851537 to 23851548 11 + TSS region transcription start site region 92715
Tssr92716 10 23851557 to 23851580 23 + TSS region transcription start site region 92716
Tssr92717 10 23851749 to 23851774 25 + TSS region transcription start site region 92717
Vnn1 10 23894688 to 23905343 10655 + protein coding gene vanin 1
Tssr92718 10 23894847 to 23894863 16 + TSS region transcription start site region 92718
Cpgi1387 10 23894951 to 23895231 280 CpG island CpG island 1387
Tssr92719 10 23902146 to 23902156 10 + TSS region transcription start site region 92719
Taar1 10 23920406 to 23921404 998 + protein coding gene trace amine-associated receptor 1
Taar2 10 23938572 to 23941583 3011 + protein coding gene trace amine-associated receptor 2
Del(10Taar2-Taar9)1Tboz 10 23938572 to 24109534 170962 chromosomal deletion deletion, Chr 10, Thomas Bozza 1
Del(10Taar2-Taar9)2Tboz 10 23938572 to 24109534 170962 chromosomal deletion deletion, Chr 10, Thomas Bozza 2
Cpgi1388 10 23940772 to 23941019 247 CpG island CpG island 1388
Taar3 10 23949558 to 23950589 1031 + protein coding gene trace amine-associated receptor 3
Taar4 10 23960494 to 23961537 1043 + protein coding gene trace amine-associated receptor 4
Taar5 10 23970706 to 23971719 1013 + protein coding gene trace amine-associated receptor 5
Taar6 10 23984609 to 23985646 1037 - protein coding gene trace amine-associated receptor 6
Taar7a 10 23992405 to 23993481 1076 - protein coding gene trace amine-associated receptor 7A
Taar7b 10 23999939 to 24001015 1076 + protein coding gene trace amine-associated receptor 7B
Taar7c-ps 10 24013470 to 24014524 1054 + pseudogene trace amine-associated receptor 7C, pseudogene
Gm15136 10 24021229 to 24021761 532 + pseudogene predicted gene 15136
Taar7d 10 24027222 to 24028298 1076 + protein coding gene trace amine-associated receptor 7D
Taar7e 10 24037614 to 24038690 1076 + protein coding gene trace amine-associated receptor 7E
Gm6884 10 24045592 to 24046206 614 + pseudogene predicted gene 6884
Taar7f 10 24049510 to 24050586 1076 + protein coding gene trace amine-associated receptor 7F
Taar8a 10 24076500 to 24077534 1034 + protein coding gene trace amine-associated receptor 8A
Taar8b 10 24091260 to 24092294 1034 - protein coding gene trace amine-associated receptor 8B
Taar8c 10 24100878 to 24101912 1034 - protein coding gene trace amine-associated receptor 8C
Taar9 10 24108488 to 24109534 1046 - protein coding gene trace amine-associated receptor 9
Gm40614 10 24125825 to 24132485 6660 - lincRNA gene predicted gene, 40614
Tssr97063 10 24132478 to 24132497 19 - TSS region transcription start site region 97063
D10Mit249 10 24134003 to 24134150 147 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 249
D10Mit249.1 10 24134134 to 24134246 112 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 249.1
Cpgi1389 10 24149175 to 24149780 605 CpG island CpG island 1389
Stx7 10 24149288 to 24188961 39673 + protein coding gene syntaxin 7
Tssr92720 10 24149291 to 24149376 85 + TSS region transcription start site region 92720
Tssr92721 10 24149444 to 24149467 23 + TSS region transcription start site region 92721
Tssr92722 10 24149527 to 24149577 50 + TSS region transcription start site region 92722
Tssr92723 10 24150936 to 24150971 35 + TSS region transcription start site region 92723
Tssr92724 10 24151141 to 24151171 30 + TSS region transcription start site region 92724
Tssr92725 10 24188785 to 24188802 17 + TSS region transcription start site region 92725
Tssr92726 10 24189029 to 24189043 14 + TSS region transcription start site region 92726
Tssr92727 10 24189083 to 24189100 17 + TSS region transcription start site region 92727
Cpgi1390 10 24223405 to 24224098 693 CpG island CpG island 1390
Tssr92728 10 24223409 to 24223430 21 + TSS region transcription start site region 92728
Tssr3166 10 24223442 to 24223445 3 + TSS region transcription start site region 3166
Moxd1 10 24223517 to 24302783 79266 + protein coding gene monooxygenase, DBH-like 1
Tssr92729 10 24223539 to 24223601 62 + TSS region transcription start site region 92729
Tssr92730 10 24223604 to 24223611 7 + TSS region transcription start site region 92730
Tssr97064 10 24294650 to 24294675 25 - TSS region transcription start site region 97064
D10Mit106 10 24389703 to 24389827 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 106