Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:22985592-25106206

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200 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq9 10 13000000 to 25000000 12000000 QTL body mass index QTL 9
Gm35126 10 22976409 to 22990277 13868 + lncRNA gene predicted gene, 35126
D10Mit308 10 22999543 to 22999680 137 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-308
Gm35179 10 23002747 to 23020410 17663 + lncRNA gene predicted gene, 35179
Eya4 10 23102963 to 23350786 247823 - protein coding gene EYA transcriptional coactivator and phosphatase 4
Gm24655 10 23166865 to 23166971 106 - snRNA gene predicted gene, 24655
Tssr97049 10 23177015 to 23177020 5 - TSS region transcription start site region 97049
Tssr97050 10 23180171 to 23180199 28 - TSS region transcription start site region 97050
Tssr97051 10 23185527 to 23185536 9 - TSS region transcription start site region 97051
Tssr97052 10 23185560 to 23185571 11 - TSS region transcription start site region 97052
Tssr97053 10 23203830 to 23203835 5 - TSS region transcription start site region 97053
Tssr3164 10 23237215 to 23237224 9 - TSS region transcription start site region 3164
Cpgi1383 10 23348384 to 23348781 397 CpG island CpG island 1383
Cpgi1384 10 23349165 to 23350855 1690 CpG island CpG island 1384
Tssr97054 10 23349860 to 23349881 21 - TSS region transcription start site region 97054
Tssr97055 10 23349892 to 23349919 27 - TSS region transcription start site region 97055
Tssr97056 10 23350191 to 23350251 60 - TSS region transcription start site region 97056
Tssr3165 10 23350329 to 23350342 13 - TSS region transcription start site region 3165
Tssr97057 10 23350808 to 23350832 24 - TSS region transcription start site region 97057
Gm47843 10 23573020 to 23609431 36411 - lincRNA gene predicted gene, 47843
4930520K02Rik 10 23611263 to 23622148 10885 - lincRNA gene RIKEN cDNA 4930520K02 gene
Gm35291 10 23698535 to 23711487 12952 - lncRNA gene predicted gene, 35291
n-TWcca1 10 23777083 to 23777154 71 - tRNA gene nuclear encoded tRNA trytophan 1 (anticodon CCA)
Rps12 10 23785183 to 23787209 2026 - protein coding gene ribosomal protein S12
Snora33 10 23785347 to 23785451 104 - snoRNA gene small nucleolar RNA, H/ACA box 33
Snord100 10 23785754 to 23785821 67 - snoRNA gene small nucleolar RNA, C/D box 100
Tssr97058 10 23785816 to 23785821 5 - TSS region transcription start site region 97058
Gm23130 10 23786470 to 23786543 73 - snoRNA gene predicted gene, 23130
Cpgi1385 10 23786615 to 23787870 1255 CpG island CpG island 1385
Tssr97059 10 23787050 to 23787074 24 - TSS region transcription start site region 97059
Tssr97060 10 23787143 to 23787160 17 - TSS region transcription start site region 97060
Tssr97061 10 23787195 to 23787206 11 - TSS region transcription start site region 97061
Tssr97062 10 23787215 to 23787252 37 - TSS region transcription start site region 97062
Tssr92707 10 23787416 to 23787437 21 + TSS region transcription start site region 92707
D13Sfk8 10 23788193 to 23788335 142 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 8
D13Sfk10 10 23792164 to 23792316 152 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 10
Tssr92708 10 23796645 to 23796660 15 + TSS region transcription start site region 92708
Cpgi1386 10 23796787 to 23797461 674 CpG island CpG island 1386
Tssr92709 10 23796946 to 23797051 105 + TSS region transcription start site region 92709
Slc18b1 10 23796986 to 23827968 30982 + protein coding gene solute carrier family 18, subfamily B, member 1
Tssr92710 10 23797052 to 23797070 18 + TSS region transcription start site region 92710
D13Sfk9 10 23822528 to 23822673 145 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 9
Tssr92711 10 23851427 to 23851453 26 + TSS region transcription start site region 92711
Tssr92712 10 23851454 to 23851489 35 + TSS region transcription start site region 92712
Vnn3 10 23851462 to 23869843 18381 + protein coding gene vanin 3
Tssr92713 10 23851495 to 23851507 12 + TSS region transcription start site region 92713
Tssr92714 10 23851522 to 23851533 11 + TSS region transcription start site region 92714
Tssr92715 10 23851537 to 23851548 11 + TSS region transcription start site region 92715
Tssr92716 10 23851557 to 23851580 23 + TSS region transcription start site region 92716
Tssr92717 10 23851749 to 23851774 25 + TSS region transcription start site region 92717
Vnn1 10 23894688 to 23905343 10655 + protein coding gene vanin 1
Tssr92718 10 23894847 to 23894863 16 + TSS region transcription start site region 92718
Cpgi1387 10 23894951 to 23895231 280 CpG island CpG island 1387
Tssr92719 10 23902146 to 23902156 10 + TSS region transcription start site region 92719
Taar1 10 23920406 to 23921404 998 + protein coding gene trace amine-associated receptor 1
Taar2 10 23938572 to 23941583 3011 + protein coding gene trace amine-associated receptor 2
Del(10Taar2-Taar9)2Tboz 10 23938572 to 24109534 170962 chromosomal deletion deletion, Chr 10, Thomas Bozza 2
Del(10Taar2-Taar9)1Tboz 10 23938572 to 24109534 170962 chromosomal deletion deletion, Chr 10, Thomas Bozza 1
Cpgi1388 10 23940772 to 23941019 247 CpG island CpG island 1388
Taar3 10 23949558 to 23950589 1031 + protein coding gene trace amine-associated receptor 3
Taar4 10 23960494 to 23961537 1043 + protein coding gene trace amine-associated receptor 4
Taar5 10 23970706 to 23971719 1013 + protein coding gene trace amine-associated receptor 5
Taar6 10 23984609 to 23985646 1037 - protein coding gene trace amine-associated receptor 6
Taar7a 10 23992405 to 23993481 1076 - protein coding gene trace amine-associated receptor 7A
Taar7b 10 23999939 to 24001015 1076 + protein coding gene trace amine-associated receptor 7B
Taar7c-ps 10 24013470 to 24014524 1054 + pseudogene trace amine-associated receptor 7C, pseudogene
Gm15136 10 24021229 to 24021761 532 + pseudogene predicted gene 15136
Taar7d 10 24027222 to 24028298 1076 + protein coding gene trace amine-associated receptor 7D
Taar7e 10 24037614 to 24038690 1076 + protein coding gene trace amine-associated receptor 7E
Gm6884 10 24045592 to 24046206 614 + pseudogene predicted gene 6884
Taar7f 10 24049510 to 24050586 1076 + protein coding gene trace amine-associated receptor 7F
Taar8a 10 24076500 to 24077534 1034 + protein coding gene trace amine-associated receptor 8A
Taar8b 10 24091260 to 24092294 1034 - protein coding gene trace amine-associated receptor 8B
Taar8c 10 24100878 to 24101912 1034 - protein coding gene trace amine-associated receptor 8C
Taar9 10 24108488 to 24109534 1046 - protein coding gene trace amine-associated receptor 9
Gm40614 10 24125825 to 24132485 6660 - lincRNA gene predicted gene, 40614
Tssr97063 10 24132478 to 24132497 19 - TSS region transcription start site region 97063
D10Mit249 10 24134003 to 24134150 147 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 249
D10Mit249.1 10 24134134 to 24134246 112 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 249.1
Cpgi1389 10 24149175 to 24149780 605 CpG island CpG island 1389
Stx7 10 24149288 to 24188961 39673 + protein coding gene syntaxin 7
Tssr92720 10 24149291 to 24149376 85 + TSS region transcription start site region 92720
Tssr92721 10 24149444 to 24149467 23 + TSS region transcription start site region 92721
Tssr92722 10 24149527 to 24149577 50 + TSS region transcription start site region 92722
Tssr92723 10 24150936 to 24150971 35 + TSS region transcription start site region 92723
Tssr92724 10 24151141 to 24151171 30 + TSS region transcription start site region 92724
Tssr92725 10 24188785 to 24188802 17 + TSS region transcription start site region 92725
Tssr92726 10 24189029 to 24189043 14 + TSS region transcription start site region 92726
Tssr92727 10 24189083 to 24189100 17 + TSS region transcription start site region 92727
Cpgi1390 10 24223405 to 24224098 693 CpG island CpG island 1390
Tssr92728 10 24223409 to 24223430 21 + TSS region transcription start site region 92728
Tssr3166 10 24223442 to 24223445 3 + TSS region transcription start site region 3166
Moxd1 10 24223517 to 24302783 79266 + protein coding gene monooxygenase, DBH-like 1
Tssr92729 10 24223539 to 24223601 62 + TSS region transcription start site region 92729
Tssr92730 10 24223604 to 24223611 7 + TSS region transcription start site region 92730
Tssr97064 10 24294650 to 24294675 25 - TSS region transcription start site region 97064
D10Mit106 10 24389703 to 24389827 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 106
Tssr97065 10 24445078 to 24445089 11 - TSS region transcription start site region 97065
Tssr92731 10 24447468 to 24447472 4 + TSS region transcription start site region 92731
Gm15271 10 24447490 to 24452657 5167 + lincRNA gene predicted gene 15271
Gm40615 10 24458374 to 24463531 5157 + lncRNA gene predicted gene, 40615
Gm15272 10 24514279 to 24514511 232 - pseudogene predicted gene 15272
Gm15270 10 24549441 to 24597108 47667 - unclassified non-coding RNA gene predicted gene 15270
Gm36089 10 24551577 to 24570366 18789 + lncRNA gene predicted gene, 36089
Tssr3167 10 24553329 to 24553378 49 + TSS region transcription start site region 3167
Gm6893 10 24567077 to 24568134 1057 - pseudogene predicted gene 6893
Tssr97066 10 24588781 to 24588784 3 - TSS region transcription start site region 97066
Tssr97067 10 24590606 to 24590613 7 - TSS region transcription start site region 97067
Tssr92732 10 24590942 to 24590943 1 + TSS region transcription start site region 92732
Cpgi1391 10 24595362 to 24596540 1178 CpG island CpG island 1391
Tssr92733 10 24595434 to 24595445 11 + TSS region transcription start site region 92733
Ccn2 10 24595442 to 24598683 3241 + protein coding gene cellular communication network factor 2
Tssr92734 10 24595489 to 24595520 31 + TSS region transcription start site region 92734
Tssr92735 10 24595623 to 24595630 7 + TSS region transcription start site region 92735
Tssr97068 10 24595797 to 24595809 12 - TSS region transcription start site region 97068
Tssr92736 10 24596040 to 24596071 31 + TSS region transcription start site region 92736
Tssr92737 10 24596439 to 24596456 17 + TSS region transcription start site region 92737
D10Mit86.1 10 24597987 to 24598140 153 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 86.1
D10Mit86 10 24598163 to 24598316 153 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 86
D10Mit86.2 10 24598309 to 24598449 140 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 86.2
Cpgi1392 10 24625322 to 24625487 165 CpG island CpG island 1392
Enpp1 10 24637914 to 24712159 74245 - protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 1
Tssr92738 10 24639854 to 24639869 15 + TSS region transcription start site region 92738
Tssr92739 10 24640757 to 24640761 4 + TSS region transcription start site region 92739
Tssr97069 10 24645387 to 24645400 13 - TSS region transcription start site region 97069
Tssr97070 10 24692378 to 24692391 13 - TSS region transcription start site region 97070
Tssr97071 10 24692395 to 24692400 5 - TSS region transcription start site region 97071
Tssr97072 10 24692414 to 24692429 15 - TSS region transcription start site region 97072
Tssr97073 10 24692447 to 24692457 10 - TSS region transcription start site region 97073
Cpgi1393 10 24711505 to 24712512 1007 CpG island CpG island 1393
Tssr97074 10 24711909 to 24711918 9 - TSS region transcription start site region 97074
Tssr97075 10 24711933 to 24711949 16 - TSS region transcription start site region 97075
Tssr97076 10 24711987 to 24712004 17 - TSS region transcription start site region 97076
Tssr97077 10 24712133 to 24712146 13 - TSS region transcription start site region 97077
Enpp3 10 24773814 to 24836195 62381 - protein coding gene ectonucleotide pyrophosphatase/phosphodiesterase 3
Tssr97078 10 24785000 to 24785045 45 - TSS region transcription start site region 97078
Tssr97079 10 24787767 to 24787776 9 - TSS region transcription start site region 97079
Tssr97080 10 24806010 to 24806047 37 - TSS region transcription start site region 97080
Tssr97081 10 24813743 to 24813747 4 - TSS region transcription start site region 97081
Tssr97082 10 24828705 to 24828708 3 - TSS region transcription start site region 97082
Tssr97083 10 24836165 to 24836181 16 - TSS region transcription start site region 97083
Tssr92740 10 24842291 to 24842308 17 + TSS region transcription start site region 92740
Tssr92741 10 24842329 to 24842336 7 + TSS region transcription start site region 92741
Tssr97084 10 24842796 to 24842829 33 - TSS region transcription start site region 97084
Cpgi1394 10 24869705 to 24870355 650 CpG island CpG island 1394
Tssr92742 10 24869982 to 24869989 7 + TSS region transcription start site region 92742
Med23 10 24869986 to 24913529 43543 + protein coding gene mediator complex subunit 23
Tssr92743 10 24869998 to 24870050 52 + TSS region transcription start site region 92743
Gm23410 10 24893980 to 24894086 106 + snRNA gene predicted gene, 23410
Tssr92744 10 24902117 to 24902167 50 + TSS region transcription start site region 92744
Tssr92745 10 24904196 to 24904201 5 + TSS region transcription start site region 92745
Mir6905 10 24910664 to 24910733 69 + miRNA gene microRNA 6905
Arg1 10 24915207 to 24927470 12263 - protein coding gene arginase, liver
Tssr97085 10 24915492 to 24915493 1 - TSS region transcription start site region 97085
Tssr97086 10 24915538 to 24915555 17 - TSS region transcription start site region 97086
Tssr97087 10 24915572 to 24915581 9 - TSS region transcription start site region 97087
Tssr92746 10 24915620 to 24915637 17 + TSS region transcription start site region 92746
Tssr97088 10 24915630 to 24915641 11 - TSS region transcription start site region 97088
Tssr97089 10 24915649 to 24915656 7 - TSS region transcription start site region 97089
Tssr97090 10 24915680 to 24915687 7 - TSS region transcription start site region 97090
Tssr92747 10 24915693 to 24915727 34 + TSS region transcription start site region 92747
Tssr97091 10 24916071 to 24916082 11 - TSS region transcription start site region 97091
Tssr97092 10 24916091 to 24916101 10 - TSS region transcription start site region 97092
Tssr97093 10 24916115 to 24916128 13 - TSS region transcription start site region 97093
Tssr97094 10 24916131 to 24916139 8 - TSS region transcription start site region 97094
Tssr97095 10 24916145 to 24916156 11 - TSS region transcription start site region 97095
Tssr97096 10 24916410 to 24916441 31 - TSS region transcription start site region 97096
Tssr97097 10 24916684 to 24916688 4 - TSS region transcription start site region 97097
Tssr97098 10 24916832 to 24916847 15 - TSS region transcription start site region 97098
Tssr97099 10 24917947 to 24917956 9 - TSS region transcription start site region 97099
Tssr97100 10 24917985 to 24918017 32 - TSS region transcription start site region 97100
Tssr92748 10 24920051 to 24920057 6 + TSS region transcription start site region 92748
Tssr97101 10 24920693 to 24920711 18 - TSS region transcription start site region 97101
Tssr97102 10 24920757 to 24920776 19 - TSS region transcription start site region 97102
Tssr92749 10 24920766 to 24920781 15 + TSS region transcription start site region 92749
Tssr97103 10 24921799 to 24921810 11 - TSS region transcription start site region 97103
Tssr97104 10 24921840 to 24921857 17 - TSS region transcription start site region 97104
Tssr97105 10 24921894 to 24921902 8 - TSS region transcription start site region 97105
Tssr97106 10 24922137 to 24922148 11 - TSS region transcription start site region 97106
Gm40616 10 24922700 to 24927302 4602 + lncRNA gene predicted gene, 40616
Tssr97107 10 24924258 to 24924285 27 - TSS region transcription start site region 97107
Tssr97108 10 24926735 to 24926744 9 - TSS region transcription start site region 97108
Tssr97109 10 24927444 to 24927460 16 - TSS region transcription start site region 97109
Tssr92750 10 24927591 to 24927611 20 + TSS region transcription start site region 92750
Gm36172 10 24927613 to 24929971 2358 + bidirectional promoter lncRNA gene predicted gene, 36172
Tssr97110 10 24927719 to 24927728 9 - TSS region transcription start site region 97110
Gm36228 10 24930569 to 24962092 31523 - lncRNA gene predicted gene, 36228
Tssr97111 10 24953997 to 24954008 11 - TSS region transcription start site region 97111
Tssr92751 10 24954227 to 24954239 12 + TSS region transcription start site region 92751
Tssr97112 10 24959477 to 24959480 3 - TSS region transcription start site region 97112
Tssr97113 10 24959583 to 24959590 7 - TSS region transcription start site region 97113
Tssr97114 10 24959901 to 24959913 12 - TSS region transcription start site region 97114
Tssr97115 10 24959944 to 24959968 24 - TSS region transcription start site region 97115
Tssr92752 10 25000006 to 25000029 23 + TSS region transcription start site region 92752
Gm47715 10 25000020 to 25031035 31015 + lincRNA gene predicted gene, 47715
Tssr92753 10 25053286 to 25053287 1 + TSS region transcription start site region 92753
Gm4777 10 25053288 to 25054301 1013 + pseudogene predicted gene 4777
Gm22566 10 25054140 to 25054224 84 + miRNA gene predicted gene, 22566
Cpgi1395 10 25086622 to 25086961 339 CpG island CpG island 1395
Tssr97116 10 25098091 to 25098114 23 - TSS region transcription start site region 97116