Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:22185347-25385451

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329 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq9 10 13000000 to 25000000 12000000 QTL body mass index QTL 9
Raet1e 10 22158532 to 22191790 33258 + protein coding gene retinoic acid early transcript 1E
Gm26740 10 22187013 to 22302835 115822 - antisense lncRNA gene predicted gene, 26740
Gm26581 10 22212653 to 22217241 4588 + lincRNA gene predicted gene, 26581
Gm1972 10 22240517 to 22254501 13984 + pseudogene predicted pseudogene 1972
Hmgb1-ps8 10 22262742 to 22263367 625 - pseudogene high mobility group box 1, pseudogene 8
H60b 10 22272747 to 22289144 16397 + protein coding gene histocompatibility 60b
Cpgi1375 10 22273309 to 22273472 163 CpG island CpG island 1375
Cpgi1376 10 22273997 to 22274651 654 CpG island CpG island 1376
Gm26528 10 22281454 to 22281736 282 - pseudogene predicted gene, 26528
Tssr92681 10 22283040 to 22283055 15 + TSS region transcription start site region 92681
Tssr92682 10 22283058 to 22283070 12 + TSS region transcription start site region 92682
Tssr97021 10 22293332 to 22293364 32 - TSS region transcription start site region 97021
Tssr97022 10 22299444 to 22299484 40 - TSS region transcription start site region 97022
Tssr92683 10 22299600 to 22299606 6 + TSS region transcription start site region 92683
Tssr92684 10 22299627 to 22299639 12 + TSS region transcription start site region 92684
Tssr97023 10 22299799 to 22299815 16 - TSS region transcription start site region 97023
Tssr97024 10 22301685 to 22301711 26 - TSS region transcription start site region 97024
Tssr92685 10 22301779 to 22301803 24 + TSS region transcription start site region 92685
Tssr92686 10 22301848 to 22301859 11 + TSS region transcription start site region 92686
Tssr92687 10 22301940 to 22301971 31 + TSS region transcription start site region 92687
Tssr97025 10 22302431 to 22302455 24 - TSS region transcription start site region 97025
Tssr97026 10 22302494 to 22302548 54 - TSS region transcription start site region 97026
Tssr97027 10 22302559 to 22302573 14 - TSS region transcription start site region 97027
Tssr97028 10 22302759 to 22302768 9 - TSS region transcription start site region 97028
Tssr97029 10 22302771 to 22302819 48 - TSS region transcription start site region 97029
Tssr97030 10 22302824 to 22302856 32 - TSS region transcription start site region 97030
Tssr92688 10 22302977 to 22302983 6 + TSS region transcription start site region 92688
Tssr92689 10 22302986 to 22302989 3 + TSS region transcription start site region 92689
Tssr92690 10 22303001 to 22303013 12 + TSS region transcription start site region 92690
Tssr92691 10 22303023 to 22303052 29 + TSS region transcription start site region 92691
Tssr92692 10 22303057 to 22303059 2 + TSS region transcription start site region 92692
Tssr97031 10 22303854 to 22303866 12 - TSS region transcription start site region 97031
Tssr97032 10 22303888 to 22303889 1 - TSS region transcription start site region 97032
Tssr97033 10 22306367 to 22306383 16 - TSS region transcription start site region 97033
Tssr97034 10 22306394 to 22306418 24 - TSS region transcription start site region 97034
Tssr97035 10 22306423 to 22306431 8 - TSS region transcription start site region 97035
Tssr97036 10 22306531 to 22306540 9 - TSS region transcription start site region 97036
Tssr97037 10 22306555 to 22306586 31 - TSS region transcription start site region 97037
Tssr97038 10 22306599 to 22306610 11 - TSS region transcription start site region 97038
Tssr92693 10 22306696 to 22306732 36 + TSS region transcription start site region 92693
C920009B18Rik 10 22306720 to 22312942 6222 + lincRNA gene RIKEN cDNA C920009B18 gene
Tssr92694 10 22306735 to 22306738 3 + TSS region transcription start site region 92694
Tssr92695 10 22306741 to 22306770 29 + TSS region transcription start site region 92695
Tssr92696 10 22306774 to 22306790 16 + TSS region transcription start site region 92696
Tssr92697 10 22343402 to 22343414 12 + TSS region transcription start site region 92697
Tssr92698 10 22343426 to 22343441 15 + TSS region transcription start site region 92698
Gm5421 10 22343439 to 22345792 2353 + pseudogene predicted gene 5421
Tssr92699 10 22343443 to 22343466 23 + TSS region transcription start site region 92699
Raet1d 10 22361865 to 22374143 12278 + protein coding gene retinoic acid early transcript delta
Gm34607 10 22376450 to 22410736 34286 - lncRNA gene predicted gene, 34607
Gm34656 10 22380796 to 22386053 5257 + lncRNA gene predicted gene, 34656
Gm10825 10 22402883 to 22407470 4587 + lincRNA gene predicted gene 10825
Gm16531 10 22430743 to 22444718 13975 + pseudogene predicted gene, 16531
Gm40610 10 22450488 to 22460954 10466 - lncRNA gene predicted gene, 40610
Gm26585 10 22452891 to 22453520 629 - pseudogene predicted gene, 26585
D10Mit183a 10 22498128 to 22498275 147 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 183a
D10Mit183b 10 22563199 to 22563337 138 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 183b
D10Dcr6 10 22563212 to 22563300 88 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 6
Gm40612 10 22570800 to 22613510 42710 - lncRNA gene predicted gene, 40612
Gm46216 10 22604904 to 22607998 3094 + lncRNA gene predicted gene, 46216
Cpgi1377 10 22644901 to 22645639 738 CpG island CpG island 1377
Slc2a12 10 22645011 to 22704285 59274 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 12
Tssr92700 10 22645087 to 22645109 22 + TSS region transcription start site region 92700
Tssr92701 10 22645121 to 22645137 16 + TSS region transcription start site region 92701
Tssr92702 10 22649003 to 22649009 6 + TSS region transcription start site region 92702
Cpgi1378 10 22679424 to 22679679 255 CpG island CpG island 1378
Tbpl1 10 22703879 to 22731938 28059 - protein coding gene TATA box binding protein-like 1
Tssr97039 10 22704283 to 22704284 1 - TSS region transcription start site region 97039
Tssr3162 10 22704647 to 22704648 1 + TSS region transcription start site region 3162
Mir7663 10 22729372 to 22729432 60 - miRNA gene microRNA 7663
Cpgi1379 10 22730374 to 22732249 1875 CpG island CpG island 1379
Tssr97040 10 22731294 to 22731305 11 - TSS region transcription start site region 97040
Tssr97041 10 22731306 to 22731330 24 - TSS region transcription start site region 97041
Tssr97042 10 22731336 to 22731385 49 - TSS region transcription start site region 97042
Tssr92703 10 22731457 to 22731548 91 + TSS region transcription start site region 92703
Tssr97043 10 22731833 to 22731849 16 - TSS region transcription start site region 97043
Tssr97044 10 22731854 to 22731872 18 - TSS region transcription start site region 97044
Tssr97045 10 22731874 to 22731916 42 - TSS region transcription start site region 97045
Tssr97046 10 22731918 to 22731946 28 - TSS region transcription start site region 97046
Tssr97047 10 22731959 to 22731989 30 - TSS region transcription start site region 97047
Tssr3163 10 22732020 to 22732036 16 + TSS region transcription start site region 3163
Gm47634 10 22751897 to 22753337 1440 + unclassified non-coding RNA gene predicted gene, 47634
Gm17794 10 22791319 to 22792273 954 + pseudogene predicted gene, 17794
Tssr92704 10 22814967 to 22814987 20 + TSS region transcription start site region 92704
Gm10824 10 22815749 to 22823330 7581 + antisense lncRNA gene predicted gene 10824
Cpgi1380 10 22816153 to 22816576 423 CpG island CpG island 1380
Tcf21 10 22817263 to 22820128 2865 - protein coding gene transcription factor 21
Tssr92705 10 22817785 to 22817796 11 + TSS region transcription start site region 92705
Cpgi1381 10 22819176 to 22819951 775 CpG island CpG island 1381
Tssr97048 10 22820126 to 22820150 24 - TSS region transcription start site region 97048
Tssr92706 10 22820268 to 22820279 11 + TSS region transcription start site region 92706
Gm46217 10 22852955 to 22857526 4571 + lncRNA gene predicted gene, 46217
Cpgi1382 10 22954245 to 22954413 168 CpG island CpG island 1382
Gm47787 10 22955901 to 22956584 683 - pseudogene predicted gene, 47787
Gm35126 10 22976409 to 22990277 13868 + lncRNA gene predicted gene, 35126
D10Mit308 10 22999543 to 22999680 137 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-308
Gm35179 10 23002747 to 23020410 17663 + lncRNA gene predicted gene, 35179
Eya4 10 23102963 to 23350786 247823 - protein coding gene EYA transcriptional coactivator and phosphatase 4
Gm24655 10 23166865 to 23166971 106 - snRNA gene predicted gene, 24655
Tssr97049 10 23177015 to 23177020 5 - TSS region transcription start site region 97049
Tssr97050 10 23180171 to 23180199 28 - TSS region transcription start site region 97050
Tssr97051 10 23185527 to 23185536 9 - TSS region transcription start site region 97051
Tssr97052 10 23185560 to 23185571 11 - TSS region transcription start site region 97052
Tssr97053 10 23203830 to 23203835 5 - TSS region transcription start site region 97053
Tssr3164 10 23237215 to 23237224 9 - TSS region transcription start site region 3164
Cpgi1383 10 23348384 to 23348781 397 CpG island CpG island 1383
Cpgi1384 10 23349165 to 23350855 1690 CpG island CpG island 1384
Tssr97054 10 23349860 to 23349881 21 - TSS region transcription start site region 97054
Tssr97055 10 23349892 to 23349919 27 - TSS region transcription start site region 97055
Tssr97056 10 23350191 to 23350251 60 - TSS region transcription start site region 97056
Tssr3165 10 23350329 to 23350342 13 - TSS region transcription start site region 3165
Tssr97057 10 23350808 to 23350832 24 - TSS region transcription start site region 97057
Gm47843 10 23573020 to 23609431 36411 - lincRNA gene predicted gene, 47843
4930520K02Rik 10 23611263 to 23622148 10885 - lincRNA gene RIKEN cDNA 4930520K02 gene
Gm35291 10 23698535 to 23711487 12952 - lncRNA gene predicted gene, 35291
n-TWcca1 10 23777083 to 23777154 71 - tRNA gene nuclear encoded tRNA trytophan 1 (anticodon CCA)
Rps12 10 23785183 to 23787209 2026 - protein coding gene ribosomal protein S12
Snora33 10 23785347 to 23785451 104 - snoRNA gene small nucleolar RNA, H/ACA box 33
Snord100 10 23785754 to 23785821 67 - snoRNA gene small nucleolar RNA, C/D box 100
Tssr97058 10 23785816 to 23785821 5 - TSS region transcription start site region 97058
Gm23130 10 23786470 to 23786543 73 - snoRNA gene predicted gene, 23130
Cpgi1385 10 23786615 to 23787870 1255 CpG island CpG island 1385
Tssr97059 10 23787050 to 23787074 24 - TSS region transcription start site region 97059
Tssr97060 10 23787143 to 23787160 17 - TSS region transcription start site region 97060
Tssr97061 10 23787195 to 23787206 11 - TSS region transcription start site region 97061
Tssr97062 10 23787215 to 23787252 37 - TSS region transcription start site region 97062
Tssr92707 10 23787416 to 23787437 21 + TSS region transcription start site region 92707
D13Sfk8 10 23788193 to 23788335 142 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 8
D13Sfk10 10 23792164 to 23792316 152 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 10
Tssr92708 10 23796645 to 23796660 15 + TSS region transcription start site region 92708
Cpgi1386 10 23796787 to 23797461 674 CpG island CpG island 1386
Tssr92709 10 23796946 to 23797051 105 + TSS region transcription start site region 92709
Slc18b1 10 23796986 to 23827968 30982 + protein coding gene solute carrier family 18, subfamily B, member 1
Tssr92710 10 23797052 to 23797070 18 + TSS region transcription start site region 92710
D13Sfk9 10 23822528 to 23822673 145 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 9
Tssr92711 10 23851427 to 23851453 26 + TSS region transcription start site region 92711
Tssr92712 10 23851454 to 23851489 35 + TSS region transcription start site region 92712
Vnn3 10 23851462 to 23869843 18381 + protein coding gene vanin 3
Tssr92713 10 23851495 to 23851507 12 + TSS region transcription start site region 92713
Tssr92714 10 23851522 to 23851533 11 + TSS region transcription start site region 92714
Tssr92715 10 23851537 to 23851548 11 + TSS region transcription start site region 92715
Tssr92716 10 23851557 to 23851580 23 + TSS region transcription start site region 92716
Tssr92717 10 23851749 to 23851774 25 + TSS region transcription start site region 92717
Vnn1 10 23894688 to 23905343 10655 + protein coding gene vanin 1
Tssr92718 10 23894847 to 23894863 16 + TSS region transcription start site region 92718
Cpgi1387 10 23894951 to 23895231 280 CpG island CpG island 1387
Tssr92719 10 23902146 to 23902156 10 + TSS region transcription start site region 92719
Taar1 10 23920406 to 23921404 998 + protein coding gene trace amine-associated receptor 1
Taar2 10 23938572 to 23941583 3011 + protein coding gene trace amine-associated receptor 2
Del(10Taar2-Taar9)1Tboz 10 23938572 to 24109534 170962 chromosomal deletion deletion, Chr 10, Thomas Bozza 1
Del(10Taar2-Taar9)2Tboz 10 23938572 to 24109534 170962 chromosomal deletion deletion, Chr 10, Thomas Bozza 2
Cpgi1388 10 23940772 to 23941019 247 CpG island CpG island 1388
Taar3 10 23949558 to 23950589 1031 + protein coding gene trace amine-associated receptor 3
Taar4 10 23960494 to 23961537 1043 + protein coding gene trace amine-associated receptor 4
Taar5 10 23970706 to 23971719 1013 + protein coding gene trace amine-associated receptor 5
Taar6 10 23984609 to 23985646 1037 - protein coding gene trace amine-associated receptor 6
Taar7a 10 23992405 to 23993481 1076 - protein coding gene trace amine-associated receptor 7A
Taar7b 10 23999939 to 24001015 1076 + protein coding gene trace amine-associated receptor 7B
Taar7c-ps 10 24013470 to 24014524 1054 + pseudogene trace amine-associated receptor 7C, pseudogene
Gm15136 10 24021229 to 24021761 532 + pseudogene predicted gene 15136
Taar7d 10 24027222 to 24028298 1076 + protein coding gene trace amine-associated receptor 7D
Taar7e 10 24037614 to 24038690 1076 + protein coding gene trace amine-associated receptor 7E
Gm6884 10 24045592 to 24046206 614 + pseudogene predicted gene 6884
Taar7f 10 24049510 to 24050586 1076 + protein coding gene trace amine-associated receptor 7F
Taar8a 10 24076500 to 24077534 1034 + protein coding gene trace amine-associated receptor 8A
Taar8b 10 24091260 to 24092294 1034 - protein coding gene trace amine-associated receptor 8B
Taar8c 10 24100878 to 24101912 1034 - protein coding gene trace amine-associated receptor 8C
Taar9 10 24108488 to 24109534 1046 - protein coding gene trace amine-associated receptor 9
Gm40614 10 24125825 to 24132485 6660 - lincRNA gene predicted gene, 40614
Tssr97063 10 24132478 to 24132497 19 - TSS region transcription start site region 97063
D10Mit249 10 24134003 to 24134150 147 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology 249
D10Mit249.1 10 24134134 to 24134246 112 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 249.1
Cpgi1389 10 24149175 to 24149780 605 CpG island CpG island 1389
Stx7 10 24149288 to 24188961 39673 + protein coding gene syntaxin 7
Tssr92720 10 24149291 to 24149376 85 + TSS region transcription start site region 92720
Tssr92721 10 24149444 to 24149467 23 + TSS region transcription start site region 92721
Tssr92722 10 24149527 to 24149577 50 + TSS region transcription start site region 92722
Tssr92723 10 24150936 to 24150971 35 + TSS region transcription start site region 92723
Tssr92724 10 24151141 to 24151171 30 + TSS region transcription start site region 92724
Tssr92725 10 24188785 to 24188802 17 + TSS region transcription start site region 92725
Tssr92726 10 24189029 to 24189043 14 + TSS region transcription start site region 92726
Tssr92727 10 24189083 to 24189100 17 + TSS region transcription start site region 92727
Cpgi1390 10 24223405 to 24224098 693 CpG island CpG island 1390
Tssr92728 10 24223409 to 24223430 21 + TSS region transcription start site region 92728
Tssr3166 10 24223442 to 24223445 3 + TSS region transcription start site region 3166
Moxd1 10 24223517 to 24302783 79266 + protein coding gene monooxygenase, DBH-like 1
Tssr92729 10 24223539 to 24223601 62 + TSS region transcription start site region 92729
Tssr92730 10 24223604 to 24223611 7 + TSS region transcription start site region 92730
Tssr97064 10 24294650 to 24294675 25 - TSS region transcription start site region 97064
D10Mit106 10 24389703 to 24389827 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 106
Tssr97065 10 24445078 to 24445089 11 - TSS region transcription start site region 97065
Tssr92731 10 24447468 to 24447472 4 + TSS region transcription start site region 92731
Gm15271 10 24447490 to 24452657 5167 + lincRNA gene predicted gene 15271
Gm40615 10 24458374 to 24463531 5157 + lncRNA gene predicted gene, 40615
Gm15272 10 24514279 to 24514511 232 - pseudogene predicted gene 15272
Gm15270 10 24549441 to 24597108 47667 - unclassified non-coding RNA gene predicted gene 15270
Gm36089 10 24551577 to 24570366 18789 + lncRNA gene predicted gene, 36089
Tssr3167 10 24553329 to 24553378 49 + TSS region transcription start site region 3167
Gm6893 10 24567077 to 24568134 1057 - pseudogene predicted gene 6893