Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:21920347-25650451

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419 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq9 10 13000000 to 25000000 12000000 QTL body mass index QTL 9
Sgk1 10 21882184 to 21999903 117719 + protein coding gene serum/glucocorticoid regulated kinase 1
Gm18511 10 21948860 to 21949659 799 + pseudogene predicted gene, 18511
Tssr92654 10 21978643 to 21978689 46 + TSS region transcription start site region 92654
Tssr92655 10 21992206 to 21992213 7 + TSS region transcription start site region 92655
Tssr92656 10 21992216 to 21992234 18 + TSS region transcription start site region 92656
Cpgi1364 10 21992860 to 21993326 466 CpG island CpG island 1364
Tssr92657 10 21993536 to 21993554 18 + TSS region transcription start site region 92657
Cpgi1365 10 21993624 to 21994931 1307 CpG island CpG island 1365
Tssr92658 10 21993877 to 21993886 9 + TSS region transcription start site region 92658
Tssr92659 10 21993946 to 21993955 9 + TSS region transcription start site region 92659
Tssr92660 10 21993965 to 21993990 25 + TSS region transcription start site region 92660
Tssr92661 10 21994001 to 21994021 20 + TSS region transcription start site region 92661
Tssr92662 10 21994026 to 21994045 19 + TSS region transcription start site region 92662
Tssr92663 10 21994145 to 21994184 39 + TSS region transcription start site region 92663
Tssr97012 10 21994514 to 21994552 38 - TSS region transcription start site region 97012
Tssr92664 10 21994674 to 21994694 20 + TSS region transcription start site region 92664
Tssr92665 10 21995346 to 21995350 4 + TSS region transcription start site region 92665
Tssr92666 10 21995780 to 21995809 29 + TSS region transcription start site region 92666
Tssr92667 10 21996923 to 21996936 13 + TSS region transcription start site region 92667
Tssr92668 10 21996945 to 21996956 11 + TSS region transcription start site region 92668
Tssr92669 10 21997013 to 21997026 13 + TSS region transcription start site region 92669
Tssr92670 10 21997068 to 21997079 11 + TSS region transcription start site region 92670
Tssr92671 10 21997097 to 21997112 15 + TSS region transcription start site region 92671
Tssr92672 10 21997121 to 21997135 14 + TSS region transcription start site region 92672
Tssr92673 10 21997136 to 21997158 22 + TSS region transcription start site region 92673
Tssr92674 10 21997169 to 21997181 12 + TSS region transcription start site region 92674
Tssr92675 10 21997435 to 21997449 14 + TSS region transcription start site region 92675
Tssr97013 10 22010109 to 22010112 3 - TSS region transcription start site region 97013
Gm8540 10 22040701 to 22048512 7811 - pseudogene predicted gene 8540
Gm7672 10 22046114 to 22046985 871 - pseudogene predicted gene 7672
Tssr97014 10 22048513 to 22048514 1 - TSS region transcription start site region 97014
Tssr97015 10 22048530 to 22048537 7 - TSS region transcription start site region 97015
Gm18637 10 22052153 to 22053691 1538 + pseudogene predicted gene, 18637
Gm34267 10 22054388 to 22058655 4267 - lncRNA gene predicted gene, 34267
Cpgi1366 10 22058338 to 22058951 613 CpG island CpG island 1366
Tssr97016 10 22058589 to 22058604 15 - TSS region transcription start site region 97016
Tssr97017 10 22058607 to 22058639 32 - TSS region transcription start site region 97017
Tssr97018 10 22058648 to 22058659 11 - TSS region transcription start site region 97018
Tssr92676 10 22058866 to 22058881 15 + TSS region transcription start site region 92676
4930444G20Rik 10 22066309 to 22068079 1770 - protein coding gene RIKEN cDNA 4930444G20 gene
Tssr97019 10 22067662 to 22067665 3 - TSS region transcription start site region 97019
Tssr97020 10 22068538 to 22068546 8 - TSS region transcription start site region 97020
Gm2539 10 22077921 to 22103522 25601 + pseudogene predicted gene, 2539
Gm19791 10 22110815 to 22113358 2543 + pseudogene predicted gene, 19791
E030030I06Rik 10 22113050 to 22149270 36220 - protein coding gene RIKEN cDNA E030030I06 gene
Gm7678 10 22124496 to 22125435 939 + pseudogene predicted gene 7678
Cpgi1367 10 22140787 to 22141055 268 CpG island CpG island 1367
Cpgi1368 10 22142331 to 22142983 652 CpG island CpG island 1368
Cpgi1369 10 22148294 to 22150377 2083 CpG island CpG island 1369
Tssr3161 10 22148813 to 22148853 40 - TSS region transcription start site region 3161
Cpgi1370 10 22150699 to 22150949 250 CpG island CpG island 1370
Cpgi1371 10 22151197 to 22151876 679 CpG island CpG island 1371
Gm4895 10 22153280 to 22154416 1136 - pseudogene predicted gene 4895
Cpgi1372 10 22154193 to 22154587 394 CpG island CpG island 1372
Tssr92677 10 22158395 to 22158405 10 + TSS region transcription start site region 92677
Cpgi1373 10 22158399 to 22158651 252 CpG island CpG island 1373
Tssr92678 10 22158469 to 22158481 12 + TSS region transcription start site region 92678
Tssr92679 10 22158521 to 22158537 16 + TSS region transcription start site region 92679
Raet1e 10 22158532 to 22191790 33258 + protein coding gene retinoic acid early transcript 1E
Tssr92680 10 22158566 to 22158584 18 + TSS region transcription start site region 92680
Cpgi1374 10 22159187 to 22159449 262 CpG island CpG island 1374
Gm26740 10 22187013 to 22302835 115822 - antisense lncRNA gene predicted gene, 26740
Gm26581 10 22212653 to 22217241 4588 + lincRNA gene predicted gene, 26581
Gm1972 10 22240517 to 22254501 13984 + pseudogene predicted pseudogene 1972
Hmgb1-ps8 10 22262742 to 22263367 625 - pseudogene high mobility group box 1, pseudogene 8
H60b 10 22272747 to 22289144 16397 + protein coding gene histocompatibility 60b
Cpgi1375 10 22273309 to 22273472 163 CpG island CpG island 1375
Cpgi1376 10 22273997 to 22274651 654 CpG island CpG island 1376
Gm26528 10 22281454 to 22281736 282 - pseudogene predicted gene, 26528
Tssr92681 10 22283040 to 22283055 15 + TSS region transcription start site region 92681
Tssr92682 10 22283058 to 22283070 12 + TSS region transcription start site region 92682
Tssr97021 10 22293332 to 22293364 32 - TSS region transcription start site region 97021
Tssr97022 10 22299444 to 22299484 40 - TSS region transcription start site region 97022
Tssr92683 10 22299600 to 22299606 6 + TSS region transcription start site region 92683
Tssr92684 10 22299627 to 22299639 12 + TSS region transcription start site region 92684
Tssr97023 10 22299799 to 22299815 16 - TSS region transcription start site region 97023
Tssr97024 10 22301685 to 22301711 26 - TSS region transcription start site region 97024
Tssr92685 10 22301779 to 22301803 24 + TSS region transcription start site region 92685
Tssr92686 10 22301848 to 22301859 11 + TSS region transcription start site region 92686
Tssr92687 10 22301940 to 22301971 31 + TSS region transcription start site region 92687
Tssr97025 10 22302431 to 22302455 24 - TSS region transcription start site region 97025
Tssr97026 10 22302494 to 22302548 54 - TSS region transcription start site region 97026
Tssr97027 10 22302559 to 22302573 14 - TSS region transcription start site region 97027
Tssr97028 10 22302759 to 22302768 9 - TSS region transcription start site region 97028
Tssr97029 10 22302771 to 22302819 48 - TSS region transcription start site region 97029
Tssr97030 10 22302824 to 22302856 32 - TSS region transcription start site region 97030
Tssr92688 10 22302977 to 22302983 6 + TSS region transcription start site region 92688
Tssr92689 10 22302986 to 22302989 3 + TSS region transcription start site region 92689
Tssr92690 10 22303001 to 22303013 12 + TSS region transcription start site region 92690
Tssr92691 10 22303023 to 22303052 29 + TSS region transcription start site region 92691
Tssr92692 10 22303057 to 22303059 2 + TSS region transcription start site region 92692
Tssr97031 10 22303854 to 22303866 12 - TSS region transcription start site region 97031
Tssr97032 10 22303888 to 22303889 1 - TSS region transcription start site region 97032
Tssr97033 10 22306367 to 22306383 16 - TSS region transcription start site region 97033
Tssr97034 10 22306394 to 22306418 24 - TSS region transcription start site region 97034
Tssr97035 10 22306423 to 22306431 8 - TSS region transcription start site region 97035
Tssr97036 10 22306531 to 22306540 9 - TSS region transcription start site region 97036
Tssr97037 10 22306555 to 22306586 31 - TSS region transcription start site region 97037
Tssr97038 10 22306599 to 22306610 11 - TSS region transcription start site region 97038
Tssr92693 10 22306696 to 22306732 36 + TSS region transcription start site region 92693
C920009B18Rik 10 22306720 to 22312942 6222 + lincRNA gene RIKEN cDNA C920009B18 gene
Tssr92694 10 22306735 to 22306738 3 + TSS region transcription start site region 92694
Tssr92695 10 22306741 to 22306770 29 + TSS region transcription start site region 92695
Tssr92696 10 22306774 to 22306790 16 + TSS region transcription start site region 92696
Tssr92697 10 22343402 to 22343414 12 + TSS region transcription start site region 92697
Tssr92698 10 22343426 to 22343441 15 + TSS region transcription start site region 92698
Gm5421 10 22343439 to 22345792 2353 + pseudogene predicted gene 5421
Tssr92699 10 22343443 to 22343466 23 + TSS region transcription start site region 92699
Raet1d 10 22361865 to 22374143 12278 + protein coding gene retinoic acid early transcript delta
Gm34607 10 22376450 to 22410736 34286 - lncRNA gene predicted gene, 34607
Gm34656 10 22380796 to 22386053 5257 + lncRNA gene predicted gene, 34656
Gm10825 10 22402883 to 22407470 4587 + lincRNA gene predicted gene 10825
Gm16531 10 22430743 to 22444718 13975 + pseudogene predicted gene, 16531
Gm40610 10 22450488 to 22460954 10466 - lncRNA gene predicted gene, 40610
Gm26585 10 22452891 to 22453520 629 - pseudogene predicted gene, 26585
D10Mit183a 10 22498128 to 22498275 147 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 183a
D10Mit183b 10 22563199 to 22563337 138 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 183b
D10Dcr6 10 22563212 to 22563300 88 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 6
Gm40612 10 22570800 to 22613510 42710 - lncRNA gene predicted gene, 40612
Gm46216 10 22604904 to 22607998 3094 + lncRNA gene predicted gene, 46216
Cpgi1377 10 22644901 to 22645639 738 CpG island CpG island 1377
Slc2a12 10 22645011 to 22704285 59274 + protein coding gene solute carrier family 2 (facilitated glucose transporter), member 12
Tssr92700 10 22645087 to 22645109 22 + TSS region transcription start site region 92700
Tssr92701 10 22645121 to 22645137 16 + TSS region transcription start site region 92701
Tssr92702 10 22649003 to 22649009 6 + TSS region transcription start site region 92702
Cpgi1378 10 22679424 to 22679679 255 CpG island CpG island 1378
Tbpl1 10 22703879 to 22731938 28059 - protein coding gene TATA box binding protein-like 1
Tssr97039 10 22704283 to 22704284 1 - TSS region transcription start site region 97039
Tssr3162 10 22704647 to 22704648 1 + TSS region transcription start site region 3162
Mir7663 10 22729372 to 22729432 60 - miRNA gene microRNA 7663
Cpgi1379 10 22730374 to 22732249 1875 CpG island CpG island 1379
Tssr97040 10 22731294 to 22731305 11 - TSS region transcription start site region 97040
Tssr97041 10 22731306 to 22731330 24 - TSS region transcription start site region 97041
Tssr97042 10 22731336 to 22731385 49 - TSS region transcription start site region 97042
Tssr92703 10 22731457 to 22731548 91 + TSS region transcription start site region 92703
Tssr97043 10 22731833 to 22731849 16 - TSS region transcription start site region 97043
Tssr97044 10 22731854 to 22731872 18 - TSS region transcription start site region 97044
Tssr97045 10 22731874 to 22731916 42 - TSS region transcription start site region 97045
Tssr97046 10 22731918 to 22731946 28 - TSS region transcription start site region 97046
Tssr97047 10 22731959 to 22731989 30 - TSS region transcription start site region 97047
Tssr3163 10 22732020 to 22732036 16 + TSS region transcription start site region 3163
Gm47634 10 22751897 to 22753337 1440 + unclassified non-coding RNA gene predicted gene, 47634
Gm17794 10 22791319 to 22792273 954 + pseudogene predicted gene, 17794
Tssr92704 10 22814967 to 22814987 20 + TSS region transcription start site region 92704
Gm10824 10 22815749 to 22823330 7581 + antisense lncRNA gene predicted gene 10824
Cpgi1380 10 22816153 to 22816576 423 CpG island CpG island 1380
Tcf21 10 22817263 to 22820128 2865 - protein coding gene transcription factor 21
Tssr92705 10 22817785 to 22817796 11 + TSS region transcription start site region 92705
Cpgi1381 10 22819176 to 22819951 775 CpG island CpG island 1381
Tssr97048 10 22820126 to 22820150 24 - TSS region transcription start site region 97048
Tssr92706 10 22820268 to 22820279 11 + TSS region transcription start site region 92706
Gm46217 10 22852955 to 22857526 4571 + lncRNA gene predicted gene, 46217
Cpgi1382 10 22954245 to 22954413 168 CpG island CpG island 1382
Gm47787 10 22955901 to 22956584 683 - pseudogene predicted gene, 47787
Gm35126 10 22976409 to 22990277 13868 + lncRNA gene predicted gene, 35126
D10Mit308 10 22999543 to 22999680 137 DNA segment DNA Segment, Chr 10, Massachusetts Institute of Technology-308
Gm35179 10 23002747 to 23020410 17663 + lncRNA gene predicted gene, 35179
Eya4 10 23102963 to 23350786 247823 - protein coding gene EYA transcriptional coactivator and phosphatase 4
Gm24655 10 23166865 to 23166971 106 - snRNA gene predicted gene, 24655
Tssr97049 10 23177015 to 23177020 5 - TSS region transcription start site region 97049
Tssr97050 10 23180171 to 23180199 28 - TSS region transcription start site region 97050
Tssr97051 10 23185527 to 23185536 9 - TSS region transcription start site region 97051
Tssr97052 10 23185560 to 23185571 11 - TSS region transcription start site region 97052
Tssr97053 10 23203830 to 23203835 5 - TSS region transcription start site region 97053
Tssr3164 10 23237215 to 23237224 9 - TSS region transcription start site region 3164
Cpgi1383 10 23348384 to 23348781 397 CpG island CpG island 1383
Cpgi1384 10 23349165 to 23350855 1690 CpG island CpG island 1384
Tssr97054 10 23349860 to 23349881 21 - TSS region transcription start site region 97054
Tssr97055 10 23349892 to 23349919 27 - TSS region transcription start site region 97055
Tssr97056 10 23350191 to 23350251 60 - TSS region transcription start site region 97056
Tssr3165 10 23350329 to 23350342 13 - TSS region transcription start site region 3165
Tssr97057 10 23350808 to 23350832 24 - TSS region transcription start site region 97057
Gm47843 10 23573020 to 23609431 36411 - lincRNA gene predicted gene, 47843
4930520K02Rik 10 23611263 to 23622148 10885 - lincRNA gene RIKEN cDNA 4930520K02 gene
Gm35291 10 23698535 to 23711487 12952 - lncRNA gene predicted gene, 35291
n-TWcca1 10 23777083 to 23777154 71 - tRNA gene nuclear encoded tRNA trytophan 1 (anticodon CCA)
Rps12 10 23785183 to 23787209 2026 - protein coding gene ribosomal protein S12
Snora33 10 23785347 to 23785451 104 - snoRNA gene small nucleolar RNA, H/ACA box 33
Snord100 10 23785754 to 23785821 67 - snoRNA gene small nucleolar RNA, C/D box 100
Tssr97058 10 23785816 to 23785821 5 - TSS region transcription start site region 97058
Gm23130 10 23786470 to 23786543 73 - snoRNA gene predicted gene, 23130
Cpgi1385 10 23786615 to 23787870 1255 CpG island CpG island 1385
Tssr97059 10 23787050 to 23787074 24 - TSS region transcription start site region 97059
Tssr97060 10 23787143 to 23787160 17 - TSS region transcription start site region 97060
Tssr97061 10 23787195 to 23787206 11 - TSS region transcription start site region 97061
Tssr97062 10 23787215 to 23787252 37 - TSS region transcription start site region 97062
Tssr92707 10 23787416 to 23787437 21 + TSS region transcription start site region 92707
D13Sfk8 10 23788193 to 23788335 142 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 8
D13Sfk10 10 23792164 to 23792316 152 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 10
Tssr92708 10 23796645 to 23796660 15 + TSS region transcription start site region 92708
Cpgi1386 10 23796787 to 23797461 674 CpG island CpG island 1386
Tssr92709 10 23796946 to 23797051 105 + TSS region transcription start site region 92709
Slc18b1 10 23796986 to 23827968 30982 + protein coding gene solute carrier family 18, subfamily B, member 1
Tssr92710 10 23797052 to 23797070 18 + TSS region transcription start site region 92710
D13Sfk9 10 23822528 to 23822673 145 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 9
Tssr92711 10 23851427 to 23851453 26 + TSS region transcription start site region 92711
Tssr92712 10 23851454 to 23851489 35 + TSS region transcription start site region 92712
Vnn3 10 23851462 to 23869843 18381 + protein coding gene vanin 3
Tssr92713 10 23851495 to 23851507 12 + TSS region transcription start site region 92713