Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:21551500-22141507

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm33945 10 21559471 to 21573643 14172 - lncRNA gene predicted gene, 33945
Tssr92638 10 21571727 to 21571737 10 + TSS region transcription start site region 92638
Tssr92639 10 21571747 to 21571754 7 + TSS region transcription start site region 92639
Gm33892 10 21571833 to 21575201 3368 + lncRNA gene predicted gene, 33892
Tssr92640 10 21592135 to 21592151 16 + TSS region transcription start site region 92640
Cpgi1362 10 21593049 to 21593487 438 CpG island CpG island 1362
Tssr92641 10 21593112 to 21593122 10 + TSS region transcription start site region 92641
Tssr92642 10 21593126 to 21593137 11 + TSS region transcription start site region 92642
Tssr92643 10 21593143 to 21593146 3 + TSS region transcription start site region 92643
1700020N01Rik 10 21593145 to 21622375 29230 + protein coding gene RIKEN cDNA 1700020N01 gene
Tssr92644 10 21593151 to 21593181 30 + TSS region transcription start site region 92644
Tssr92645 10 21593186 to 21593187 1 + TSS region transcription start site region 92645
Tssr92646 10 21593191 to 21593197 6 + TSS region transcription start site region 92646
Tssr92647 10 21669216 to 21669226 10 + TSS region transcription start site region 92647
Tssr92648 10 21690362 to 21690373 11 + TSS region transcription start site region 92648
Gm5420 10 21690845 to 21693978 3133 + lincRNA gene predicted gene 5420
Lmblgq4 10 21715293 to 68255809 46540516 QTL limb length QTL 4
D10Mit16 10 21715293 to 21715442 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 16
Gm29323 10 21743867 to 21747006 3139 + lincRNA gene predicted gene 29323
Tssr97007 10 21753919 to 21753930 11 - TSS region transcription start site region 97007
Tssr97008 10 21785853 to 21785860 7 - TSS region transcription start site region 97008
Tssr92649 10 21827244 to 21827255 11 + TSS region transcription start site region 92649
Platr6 10 21830499 to 21844851 14352 - lincRNA gene pluripotency associated transcript 6
Tssr97009 10 21844623 to 21844640 17 - TSS region transcription start site region 97009
Tssr97010 10 21844854 to 21844868 14 - TSS region transcription start site region 97010
Tssr97011 10 21846500 to 21846507 7 - TSS region transcription start site region 97011
Gm46215 10 21874671 to 21882278 7607 - lncRNA gene predicted gene, 46215
Gm23839 10 21878784 to 21878892 108 - snoRNA gene predicted gene, 23839
Sgk1 10 21882184 to 21999903 117719 + protein coding gene serum/glucocorticoid regulated kinase 1
Cpgi1363 10 21882205 to 21882593 388 CpG island CpG island 1363
Tssr92650 10 21882214 to 21882239 25 + TSS region transcription start site region 92650
Tssr92651 10 21882300 to 21882354 54 + TSS region transcription start site region 92651
Tssr92652 10 21884172 to 21884175 3 + TSS region transcription start site region 92652
Tssr92653 10 21886622 to 21886645 23 + TSS region transcription start site region 92653
Tssr3160 10 21907954 to 21907971 17 - TSS region transcription start site region 3160
Gm18511 10 21948860 to 21949659 799 + pseudogene predicted gene, 18511
Tssr92654 10 21978643 to 21978689 46 + TSS region transcription start site region 92654
Tssr92655 10 21992206 to 21992213 7 + TSS region transcription start site region 92655
Tssr92656 10 21992216 to 21992234 18 + TSS region transcription start site region 92656
Cpgi1364 10 21992860 to 21993326 466 CpG island CpG island 1364
Tssr92657 10 21993536 to 21993554 18 + TSS region transcription start site region 92657
Cpgi1365 10 21993624 to 21994931 1307 CpG island CpG island 1365
Tssr92658 10 21993877 to 21993886 9 + TSS region transcription start site region 92658
Tssr92659 10 21993946 to 21993955 9 + TSS region transcription start site region 92659
Tssr92660 10 21993965 to 21993990 25 + TSS region transcription start site region 92660
Tssr92661 10 21994001 to 21994021 20 + TSS region transcription start site region 92661
Tssr92662 10 21994026 to 21994045 19 + TSS region transcription start site region 92662
Tssr92663 10 21994145 to 21994184 39 + TSS region transcription start site region 92663
Tssr97012 10 21994514 to 21994552 38 - TSS region transcription start site region 97012
Tssr92664 10 21994674 to 21994694 20 + TSS region transcription start site region 92664
Tssr92665 10 21995346 to 21995350 4 + TSS region transcription start site region 92665
Tssr92666 10 21995780 to 21995809 29 + TSS region transcription start site region 92666
Tssr92667 10 21996923 to 21996936 13 + TSS region transcription start site region 92667
Tssr92668 10 21996945 to 21996956 11 + TSS region transcription start site region 92668
Tssr92669 10 21997013 to 21997026 13 + TSS region transcription start site region 92669
Tssr92670 10 21997068 to 21997079 11 + TSS region transcription start site region 92670
Tssr92671 10 21997097 to 21997112 15 + TSS region transcription start site region 92671
Tssr92672 10 21997121 to 21997135 14 + TSS region transcription start site region 92672
Tssr92673 10 21997136 to 21997158 22 + TSS region transcription start site region 92673
Tssr92674 10 21997169 to 21997181 12 + TSS region transcription start site region 92674
Tssr92675 10 21997435 to 21997449 14 + TSS region transcription start site region 92675
Tssr97013 10 22010109 to 22010112 3 - TSS region transcription start site region 97013
Gm8540 10 22040701 to 22048512 7811 - pseudogene predicted gene 8540
Gm7672 10 22046114 to 22046985 871 - pseudogene predicted gene 7672
Tssr97014 10 22048513 to 22048514 1 - TSS region transcription start site region 97014
Tssr97015 10 22048530 to 22048537 7 - TSS region transcription start site region 97015
Gm18637 10 22052153 to 22053691 1538 + pseudogene predicted gene, 18637
Gm34267 10 22054388 to 22058655 4267 - lncRNA gene predicted gene, 34267
Cpgi1366 10 22058338 to 22058951 613 CpG island CpG island 1366
Tssr97016 10 22058589 to 22058604 15 - TSS region transcription start site region 97016
Tssr97017 10 22058607 to 22058639 32 - TSS region transcription start site region 97017
Tssr97018 10 22058648 to 22058659 11 - TSS region transcription start site region 97018
Tssr92676 10 22058866 to 22058881 15 + TSS region transcription start site region 92676
4930444G20Rik 10 22066309 to 22068079 1770 - protein coding gene RIKEN cDNA 4930444G20 gene
Tssr97019 10 22067662 to 22067665 3 - TSS region transcription start site region 97019
Tssr97020 10 22068538 to 22068546 8 - TSS region transcription start site region 97020
Gm2539 10 22077921 to 22103522 25601 + pseudogene predicted gene, 2539
Gm19791 10 22110815 to 22113358 2543 + pseudogene predicted gene, 19791
E030030I06Rik 10 22113050 to 22149270 36220 - protein coding gene RIKEN cDNA E030030I06 gene
Gm7678 10 22124496 to 22125435 939 + pseudogene predicted gene 7678
Cpgi1367 10 22140787 to 22141055 268 CpG island CpG island 1367