Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:21175840-21766060

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40608 10 21176057 to 21185931 9874 - lincRNA gene predicted gene, 40608
Gm33619 10 21186921 to 21188618 1697 + lincRNA gene predicted gene, 33619
Tssr92623 10 21186934 to 21186966 32 + TSS region transcription start site region 92623
Tssr92624 10 21192174 to 21192184 10 + TSS region transcription start site region 92624
Gm33671 10 21216496 to 21228458 11962 + lncRNA gene predicted gene, 33671
Gm33728 10 21228529 to 21252242 23713 - lincRNA gene predicted gene, 33728
D10Dcr4 10 21231745 to 21231843 98 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 4
Tssr92625 10 21235477 to 21235488 11 + TSS region transcription start site region 92625
Tssr92626 10 21252396 to 21252424 28 + TSS region transcription start site region 92626
D10Mit124.1 10 21253938 to 21254083 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 124.1
D10Mit124 10 21254056 to 21254193 137 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 124
Tssr92627 10 21289143 to 21289148 5 + TSS region transcription start site region 92627
Gm2467 10 21289219 to 21290228 1009 + pseudogene predicted gene 2467
Cpgi1358 10 21295809 to 21296677 868 CpG island CpG island 1358
Hbs1l 10 21295979 to 21368889 72910 + protein coding gene Hbs1-like (S. cerevisiae)
Tssr92628 10 21295987 to 21296013 26 + TSS region transcription start site region 92628
4930455C13Rik 10 21319088 to 21342055 22967 - antisense lncRNA gene RIKEN cDNA 4930455C13 gene
Tssr97004 10 21342024 to 21342036 12 - TSS region transcription start site region 97004
Tssr97005 10 21342050 to 21342059 9 - TSS region transcription start site region 97005
Gm33803 10 21367840 to 21374758 6918 - lncRNA gene predicted gene, 33803
Tssr92629 10 21377290 to 21377327 37 + TSS region transcription start site region 92629
Aldh8a1 10 21377300 to 21396578 19278 + protein coding gene aldehyde dehydrogenase 8 family, member A1
Cpgi1359 10 21382199 to 21382354 155 CpG island CpG island 1359
Tssr92630 10 21394408 to 21394413 5 + TSS region transcription start site region 92630
Tssr92631 10 21395930 to 21395958 28 + TSS region transcription start site region 92631
Tssr92632 10 21396098 to 21396134 36 + TSS region transcription start site region 92632
Tssr92633 10 21396153 to 21396164 11 + TSS region transcription start site region 92633
Tssr92634 10 21396171 to 21396183 12 + TSS region transcription start site region 92634
Tssr92635 10 21400460 to 21400468 8 + TSS region transcription start site region 92635
Fkbp1a-ps2 10 21410263 to 21410573 310 - pseudogene FK506 binding protein 1a, pseudogene 2
Tssr97006 10 21410579 to 21410587 8 - TSS region transcription start site region 97006
Cpgi1360 10 21419268 to 21419542 274 CpG island CpG island 1360
1700021A07Rik 10 21419358 to 21426565 7207 + lincRNA gene RIKEN cDNA 1700021A07 gene
Tssr92636 10 21419443 to 21419460 17 + TSS region transcription start site region 92636
Tssr92637 10 21419468 to 21419481 13 + TSS region transcription start site region 92637
Gm48385 10 21435833 to 21436235 402 - pseudogene predicted gene, 48385
Gm48386 10 21445181 to 21445636 455 - pseudogene predicted gene, 48386
Cpgi1361 10 21470840 to 21471060 220 CpG island CpG island 1361
D10Mit17 10 21532255 to 21532379 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 17
D10Mit2 10 21532255 to 21532377 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 2
Eae15 10 21532255 to 21532377 122 QTL experimental allergic encephalomyelitis susceptibility 15
D10Dcr5 10 21532267 to 21532383 116 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 5
Gm33945 10 21559471 to 21573643 14172 - lncRNA gene predicted gene, 33945
Tssr92638 10 21571727 to 21571737 10 + TSS region transcription start site region 92638
Tssr92639 10 21571747 to 21571754 7 + TSS region transcription start site region 92639
Gm33892 10 21571833 to 21575201 3368 + lncRNA gene predicted gene, 33892
Tssr92640 10 21592135 to 21592151 16 + TSS region transcription start site region 92640
Cpgi1362 10 21593049 to 21593487 438 CpG island CpG island 1362
Tssr92641 10 21593112 to 21593122 10 + TSS region transcription start site region 92641
Tssr92642 10 21593126 to 21593137 11 + TSS region transcription start site region 92642
Tssr92643 10 21593143 to 21593146 3 + TSS region transcription start site region 92643
1700020N01Rik 10 21593145 to 21622375 29230 + protein coding gene RIKEN cDNA 1700020N01 gene
Tssr92644 10 21593151 to 21593181 30 + TSS region transcription start site region 92644
Tssr92645 10 21593186 to 21593187 1 + TSS region transcription start site region 92645
Tssr92646 10 21593191 to 21593197 6 + TSS region transcription start site region 92646
Tssr92647 10 21669216 to 21669226 10 + TSS region transcription start site region 92647
Tssr92648 10 21690362 to 21690373 11 + TSS region transcription start site region 92648
Gm5420 10 21690845 to 21693978 3133 + lincRNA gene predicted gene 5420
D10Mit16 10 21715293 to 21715442 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 16
Lmblgq4 10 21715293 to 68255809 46540516 QTL limb length QTL 4
Gm29323 10 21743867 to 21747006 3139 + lincRNA gene predicted gene 29323
Tssr97007 10 21753919 to 21753930 11 - TSS region transcription start site region 97007
Eae34 10 114381325 to 21532255 -92849070 QTL experimental allergic encephalomyelitis susceptibility 34