Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:20956555-23656586

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298 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ahi1 10 20952547 to 21080429 127882 + protein coding gene Abelson helper integration site 1
Tssr92616 10 20959595 to 20959643 48 + TSS region transcription start site region 92616
Tssr92617 10 20959694 to 20959710 16 + TSS region transcription start site region 92617
Cpgi1355 10 20994097 to 20994253 156 CpG island CpG island 1355
Tssr92618 10 21027077 to 21027091 14 + TSS region transcription start site region 92618
Gm10826 10 21030490 to 21033793 3303 - unclassified gene predicted gene 10826
Gm20149 10 21033954 to 21046310 12356 - antisense lncRNA gene predicted gene, 20149
D10Mit283.3 10 21035678 to 21035788 110 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.3
D10Mit283 10 21035769 to 21035893 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 283
D10Mit283.1 10 21035883 to 21036039 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.1
Tssr92619 10 21055010 to 21055021 11 + TSS region transcription start site region 92619
Tssr96978 10 21065775 to 21065808 33 - TSS region transcription start site region 96978
Tssr96979 10 21083560 to 21083573 13 - TSS region transcription start site region 96979
Gm48189 10 21100560 to 21102226 1666 + lincRNA gene predicted gene, 48189
Myb 10 21124935 to 21160984 36049 - protein coding gene myeloblastosis oncogene
Tssr96980 10 21125254 to 21125264 10 - TSS region transcription start site region 96980
Tssr96981 10 21125437 to 21125450 13 - TSS region transcription start site region 96981
Tssr96982 10 21125968 to 21125972 4 - TSS region transcription start site region 96982
Tssr96983 10 21127707 to 21127708 1 - TSS region transcription start site region 96983
Tssr96984 10 21143051 to 21143062 11 - TSS region transcription start site region 96984
Cpgi1356 10 21144964 to 21145206 242 CpG island CpG island 1356
Gm26577 10 21145094 to 21154374 9280 + antisense lncRNA gene predicted gene, 26577
Tssr3158 10 21145157 to 21145166 9 + TSS region transcription start site region 3158
Tssr96985 10 21146335 to 21146347 12 - TSS region transcription start site region 96985
Tssr96986 10 21146403 to 21146412 9 - TSS region transcription start site region 96986
Tssr96987 10 21146424 to 21146443 19 - TSS region transcription start site region 96987
Tssr96988 10 21146486 to 21146494 8 - TSS region transcription start site region 96988
Tssr96989 10 21150384 to 21150407 23 - TSS region transcription start site region 96989
Tssr92620 10 21152838 to 21152844 6 + TSS region transcription start site region 92620
Tssr96990 10 21152947 to 21152969 22 - TSS region transcription start site region 96990
Tssr96991 10 21157294 to 21157297 3 - TSS region transcription start site region 96991
Cpgi1357 10 21158820 to 21161831 3011 CpG island CpG island 1357
Tssr92621 10 21159200 to 21159207 7 + TSS region transcription start site region 92621
Tssr96992 10 21160362 to 21160378 16 - TSS region transcription start site region 96992
Tssr96993 10 21160811 to 21160820 9 - TSS region transcription start site region 96993
Tssr96994 10 21160823 to 21160877 54 - TSS region transcription start site region 96994
Tssr96995 10 21160892 to 21160911 19 - TSS region transcription start site region 96995
Tssr96996 10 21160925 to 21160969 44 - TSS region transcription start site region 96996
Tssr92622 10 21161068 to 21161087 19 + TSS region transcription start site region 92622
Tssr3159 10 21161341 to 21161348 7 - TSS region transcription start site region 3159
Tssr96997 10 21161354 to 21161369 15 - TSS region transcription start site region 96997
Tssr96998 10 21161370 to 21161385 15 - TSS region transcription start site region 96998
Tssr96999 10 21161404 to 21161420 16 - TSS region transcription start site region 96999
Tssr97000 10 21161433 to 21161448 15 - TSS region transcription start site region 97000
Tssr97001 10 21161547 to 21161558 11 - TSS region transcription start site region 97001
Tssr97002 10 21161562 to 21161587 25 - TSS region transcription start site region 97002
Tssr97003 10 21161591 to 21161659 68 - TSS region transcription start site region 97003
Gm40608 10 21176057 to 21185931 9874 - lincRNA gene predicted gene, 40608
Gm33619 10 21186921 to 21188618 1697 + lincRNA gene predicted gene, 33619
Tssr92623 10 21186934 to 21186966 32 + TSS region transcription start site region 92623
Tssr92624 10 21192174 to 21192184 10 + TSS region transcription start site region 92624
Gm33671 10 21216496 to 21228458 11962 + lncRNA gene predicted gene, 33671
Gm33728 10 21228529 to 21252242 23713 - lincRNA gene predicted gene, 33728
D10Dcr4 10 21231745 to 21231843 98 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 4
Tssr92625 10 21235477 to 21235488 11 + TSS region transcription start site region 92625
Tssr92626 10 21252396 to 21252424 28 + TSS region transcription start site region 92626
D10Mit124.1 10 21253938 to 21254083 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 124.1
D10Mit124 10 21254056 to 21254193 137 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 124
Tssr92627 10 21289143 to 21289148 5 + TSS region transcription start site region 92627
Gm2467 10 21289219 to 21290228 1009 + pseudogene predicted gene 2467
Cpgi1358 10 21295809 to 21296677 868 CpG island CpG island 1358
Hbs1l 10 21295979 to 21368889 72910 + protein coding gene Hbs1-like (S. cerevisiae)
Tssr92628 10 21295987 to 21296013 26 + TSS region transcription start site region 92628
4930455C13Rik 10 21319088 to 21342055 22967 - antisense lncRNA gene RIKEN cDNA 4930455C13 gene
Tssr97004 10 21342024 to 21342036 12 - TSS region transcription start site region 97004
Tssr97005 10 21342050 to 21342059 9 - TSS region transcription start site region 97005
Gm33803 10 21367840 to 21374758 6918 - lncRNA gene predicted gene, 33803
Tssr92629 10 21377290 to 21377327 37 + TSS region transcription start site region 92629
Aldh8a1 10 21377300 to 21396578 19278 + protein coding gene aldehyde dehydrogenase 8 family, member A1
Cpgi1359 10 21382199 to 21382354 155 CpG island CpG island 1359
Tssr92630 10 21394408 to 21394413 5 + TSS region transcription start site region 92630
Tssr92631 10 21395930 to 21395958 28 + TSS region transcription start site region 92631
Tssr92632 10 21396098 to 21396134 36 + TSS region transcription start site region 92632
Tssr92633 10 21396153 to 21396164 11 + TSS region transcription start site region 92633
Tssr92634 10 21396171 to 21396183 12 + TSS region transcription start site region 92634
Tssr92635 10 21400460 to 21400468 8 + TSS region transcription start site region 92635
Fkbp1a-ps2 10 21410263 to 21410573 310 - pseudogene FK506 binding protein 1a, pseudogene 2
Tssr97006 10 21410579 to 21410587 8 - TSS region transcription start site region 97006
Cpgi1360 10 21419268 to 21419542 274 CpG island CpG island 1360
1700021A07Rik 10 21419358 to 21426565 7207 + lincRNA gene RIKEN cDNA 1700021A07 gene
Tssr92636 10 21419443 to 21419460 17 + TSS region transcription start site region 92636
Tssr92637 10 21419468 to 21419481 13 + TSS region transcription start site region 92637
Gm48385 10 21435833 to 21436235 402 - pseudogene predicted gene, 48385
Gm48386 10 21445181 to 21445636 455 - pseudogene predicted gene, 48386
Cpgi1361 10 21470840 to 21471060 220 CpG island CpG island 1361
D10Mit17 10 21532255 to 21532379 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 17
D10Mit2 10 21532255 to 21532377 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 2
Eae15 10 21532255 to 21532377 122 QTL experimental allergic encephalomyelitis susceptibility 15
D10Dcr5 10 21532267 to 21532383 116 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 5
Gm33945 10 21559471 to 21573643 14172 - lncRNA gene predicted gene, 33945
Tssr92638 10 21571727 to 21571737 10 + TSS region transcription start site region 92638
Tssr92639 10 21571747 to 21571754 7 + TSS region transcription start site region 92639
Gm33892 10 21571833 to 21575201 3368 + lncRNA gene predicted gene, 33892
Tssr92640 10 21592135 to 21592151 16 + TSS region transcription start site region 92640
Cpgi1362 10 21593049 to 21593487 438 CpG island CpG island 1362
Tssr92641 10 21593112 to 21593122 10 + TSS region transcription start site region 92641
Tssr92642 10 21593126 to 21593137 11 + TSS region transcription start site region 92642
Tssr92643 10 21593143 to 21593146 3 + TSS region transcription start site region 92643
1700020N01Rik 10 21593145 to 21622375 29230 + protein coding gene RIKEN cDNA 1700020N01 gene
Tssr92644 10 21593151 to 21593181 30 + TSS region transcription start site region 92644
Tssr92645 10 21593186 to 21593187 1 + TSS region transcription start site region 92645
Tssr92646 10 21593191 to 21593197 6 + TSS region transcription start site region 92646
Tssr92647 10 21669216 to 21669226 10 + TSS region transcription start site region 92647
Tssr92648 10 21690362 to 21690373 11 + TSS region transcription start site region 92648
Gm5420 10 21690845 to 21693978 3133 + lincRNA gene predicted gene 5420
D10Mit16 10 21715293 to 21715442 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 16
Lmblgq4 10 21715293 to 68255809 46540516 QTL limb length QTL 4
Gm29323 10 21743867 to 21747006 3139 + lincRNA gene predicted gene 29323
Tssr97007 10 21753919 to 21753930 11 - TSS region transcription start site region 97007
Tssr97008 10 21785853 to 21785860 7 - TSS region transcription start site region 97008
Tssr92649 10 21827244 to 21827255 11 + TSS region transcription start site region 92649
Platr6 10 21830499 to 21844851 14352 - lincRNA gene pluripotency associated transcript 6
Tssr97009 10 21844623 to 21844640 17 - TSS region transcription start site region 97009
Tssr97010 10 21844854 to 21844868 14 - TSS region transcription start site region 97010
Tssr97011 10 21846500 to 21846507 7 - TSS region transcription start site region 97011
Gm46215 10 21874671 to 21882278 7607 - lncRNA gene predicted gene, 46215
Gm23839 10 21878784 to 21878892 108 - snoRNA gene predicted gene, 23839
Sgk1 10 21882184 to 21999903 117719 + protein coding gene serum/glucocorticoid regulated kinase 1
Cpgi1363 10 21882205 to 21882593 388 CpG island CpG island 1363
Tssr92650 10 21882214 to 21882239 25 + TSS region transcription start site region 92650
Tssr92651 10 21882300 to 21882354 54 + TSS region transcription start site region 92651
Tssr92652 10 21884172 to 21884175 3 + TSS region transcription start site region 92652
Tssr92653 10 21886622 to 21886645 23 + TSS region transcription start site region 92653
Tssr3160 10 21907954 to 21907971 17 - TSS region transcription start site region 3160
Gm18511 10 21948860 to 21949659 799 + pseudogene predicted gene, 18511
Tssr92654 10 21978643 to 21978689 46 + TSS region transcription start site region 92654
Tssr92655 10 21992206 to 21992213 7 + TSS region transcription start site region 92655
Tssr92656 10 21992216 to 21992234 18 + TSS region transcription start site region 92656
Cpgi1364 10 21992860 to 21993326 466 CpG island CpG island 1364
Tssr92657 10 21993536 to 21993554 18 + TSS region transcription start site region 92657
Cpgi1365 10 21993624 to 21994931 1307 CpG island CpG island 1365
Tssr92658 10 21993877 to 21993886 9 + TSS region transcription start site region 92658
Tssr92659 10 21993946 to 21993955 9 + TSS region transcription start site region 92659
Tssr92660 10 21993965 to 21993990 25 + TSS region transcription start site region 92660
Tssr92661 10 21994001 to 21994021 20 + TSS region transcription start site region 92661
Tssr92662 10 21994026 to 21994045 19 + TSS region transcription start site region 92662
Tssr92663 10 21994145 to 21994184 39 + TSS region transcription start site region 92663
Tssr97012 10 21994514 to 21994552 38 - TSS region transcription start site region 97012
Tssr92664 10 21994674 to 21994694 20 + TSS region transcription start site region 92664
Tssr92665 10 21995346 to 21995350 4 + TSS region transcription start site region 92665
Tssr92666 10 21995780 to 21995809 29 + TSS region transcription start site region 92666
Tssr92667 10 21996923 to 21996936 13 + TSS region transcription start site region 92667
Tssr92668 10 21996945 to 21996956 11 + TSS region transcription start site region 92668
Tssr92669 10 21997013 to 21997026 13 + TSS region transcription start site region 92669
Tssr92670 10 21997068 to 21997079 11 + TSS region transcription start site region 92670
Tssr92671 10 21997097 to 21997112 15 + TSS region transcription start site region 92671
Tssr92672 10 21997121 to 21997135 14 + TSS region transcription start site region 92672
Tssr92673 10 21997136 to 21997158 22 + TSS region transcription start site region 92673
Tssr92674 10 21997169 to 21997181 12 + TSS region transcription start site region 92674
Tssr92675 10 21997435 to 21997449 14 + TSS region transcription start site region 92675
Tssr97013 10 22010109 to 22010112 3 - TSS region transcription start site region 97013
Gm8540 10 22040701 to 22048512 7811 - pseudogene predicted gene 8540
Gm7672 10 22046114 to 22046985 871 - pseudogene predicted gene 7672
Tssr97014 10 22048513 to 22048514 1 - TSS region transcription start site region 97014
Tssr97015 10 22048530 to 22048537 7 - TSS region transcription start site region 97015
Gm18637 10 22052153 to 22053691 1538 + pseudogene predicted gene, 18637
Gm34267 10 22054388 to 22058655 4267 - lncRNA gene predicted gene, 34267
Cpgi1366 10 22058338 to 22058951 613 CpG island CpG island 1366
Tssr97016 10 22058589 to 22058604 15 - TSS region transcription start site region 97016
Tssr97017 10 22058607 to 22058639 32 - TSS region transcription start site region 97017
Tssr97018 10 22058648 to 22058659 11 - TSS region transcription start site region 97018
Tssr92676 10 22058866 to 22058881 15 + TSS region transcription start site region 92676
4930444G20Rik 10 22066309 to 22068079 1770 - protein coding gene RIKEN cDNA 4930444G20 gene
Tssr97019 10 22067662 to 22067665 3 - TSS region transcription start site region 97019
Tssr97020 10 22068538 to 22068546 8 - TSS region transcription start site region 97020
Gm2539 10 22077921 to 22103522 25601 + pseudogene predicted gene, 2539
Gm19791 10 22110815 to 22113358 2543 + pseudogene predicted gene, 19791
E030030I06Rik 10 22113050 to 22149270 36220 - protein coding gene RIKEN cDNA E030030I06 gene
Gm7678 10 22124496 to 22125435 939 + pseudogene predicted gene 7678
Cpgi1367 10 22140787 to 22141055 268 CpG island CpG island 1367
Cpgi1368 10 22142331 to 22142983 652 CpG island CpG island 1368
Cpgi1369 10 22148294 to 22150377 2083 CpG island CpG island 1369
Tssr3161 10 22148813 to 22148853 40 - TSS region transcription start site region 3161
Cpgi1370 10 22150699 to 22150949 250 CpG island CpG island 1370
Cpgi1371 10 22151197 to 22151876 679 CpG island CpG island 1371
Gm4895 10 22153280 to 22154416 1136 - pseudogene predicted gene 4895
Cpgi1372 10 22154193 to 22154587 394 CpG island CpG island 1372
Tssr92677 10 22158395 to 22158405 10 + TSS region transcription start site region 92677
Cpgi1373 10 22158399 to 22158651 252 CpG island CpG island 1373
Tssr92678 10 22158469 to 22158481 12 + TSS region transcription start site region 92678
Tssr92679 10 22158521 to 22158537 16 + TSS region transcription start site region 92679
Raet1e 10 22158532 to 22191790 33258 + protein coding gene retinoic acid early transcript 1E
Tssr92680 10 22158566 to 22158584 18 + TSS region transcription start site region 92680
Cpgi1374 10 22159187 to 22159449 262 CpG island CpG island 1374
Gm26740 10 22187013 to 22302835 115822 - antisense lncRNA gene predicted gene, 26740
Gm26581 10 22212653 to 22217241 4588 + lincRNA gene predicted gene, 26581
Gm1972 10 22240517 to 22254501 13984 + pseudogene predicted pseudogene 1972
Hmgb1-ps8 10 22262742 to 22263367 625 - pseudogene high mobility group box 1, pseudogene 8
H60b 10 22272747 to 22289144 16397 + protein coding gene histocompatibility 60b
Cpgi1375 10 22273309 to 22273472 163 CpG island CpG island 1375
Cpgi1376 10 22273997 to 22274651 654 CpG island CpG island 1376
Gm26528 10 22281454 to 22281736 282 - pseudogene predicted gene, 26528
Tssr92681 10 22283040 to 22283055 15 + TSS region transcription start site region 92681
Tssr92682 10 22283058 to 22283070 12 + TSS region transcription start site region 92682
Tssr97021 10 22293332 to 22293364 32 - TSS region transcription start site region 97021
Tssr97022 10 22299444 to 22299484 40 - TSS region transcription start site region 97022
Tssr92683 10 22299600 to 22299606 6 + TSS region transcription start site region 92683
Tssr92684 10 22299627 to 22299639 12 + TSS region transcription start site region 92684
Tssr97023 10 22299799 to 22299815 16 - TSS region transcription start site region 97023
Tssr97024 10 22301685 to 22301711 26 - TSS region transcription start site region 97024