Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:20911057-21450931

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr96976 10 20919728 to 20919734 6 - TSS region transcription start site region 96976
Pgia6 10 20934272 to 20934396 124 QTL proteoglycan induced arthritis 6
D10Mit282 10 20934272 to 20934396 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 282
D10Dcr3 10 20934278 to 20934388 110 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 3
Cpgi1353 10 20952045 to 20953076 1031 CpG island CpG island 1353
Tssr96977 10 20952160 to 20952190 30 - TSS region transcription start site region 96977
Tssr92613 10 20952493 to 20952504 11 + TSS region transcription start site region 92613
Ahi1 10 20952547 to 21080429 127882 + protein coding gene Abelson helper integration site 1
Tssr3157 10 20952566 to 20952577 11 + TSS region transcription start site region 3157
Tssr92614 10 20952582 to 20952593 11 + TSS region transcription start site region 92614
Tssr92615 10 20952597 to 20952683 86 + TSS region transcription start site region 92615
Cpgi1354 10 20954261 to 20954582 321 CpG island CpG island 1354
Tssr92616 10 20959595 to 20959643 48 + TSS region transcription start site region 92616
Tssr92617 10 20959694 to 20959710 16 + TSS region transcription start site region 92617
Cpgi1355 10 20994097 to 20994253 156 CpG island CpG island 1355
Tssr92618 10 21027077 to 21027091 14 + TSS region transcription start site region 92618
Gm10826 10 21030490 to 21033793 3303 - unclassified gene predicted gene 10826
Gm20149 10 21033954 to 21046310 12356 - antisense lncRNA gene predicted gene, 20149
D10Mit283.3 10 21035678 to 21035788 110 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.3
D10Mit283 10 21035769 to 21035893 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 283
D10Mit283.1 10 21035883 to 21036039 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.1
Tssr92619 10 21055010 to 21055021 11 + TSS region transcription start site region 92619
Tssr96978 10 21065775 to 21065808 33 - TSS region transcription start site region 96978
Tssr96979 10 21083560 to 21083573 13 - TSS region transcription start site region 96979
Gm48189 10 21100560 to 21102226 1666 + lincRNA gene predicted gene, 48189
Myb 10 21124935 to 21160984 36049 - protein coding gene myeloblastosis oncogene
Tssr96980 10 21125254 to 21125264 10 - TSS region transcription start site region 96980
Tssr96981 10 21125437 to 21125450 13 - TSS region transcription start site region 96981
Tssr96982 10 21125968 to 21125972 4 - TSS region transcription start site region 96982
Tssr96983 10 21127707 to 21127708 1 - TSS region transcription start site region 96983
Tssr96984 10 21143051 to 21143062 11 - TSS region transcription start site region 96984
Cpgi1356 10 21144964 to 21145206 242 CpG island CpG island 1356
Gm26577 10 21145094 to 21154374 9280 + antisense lncRNA gene predicted gene, 26577
Tssr3158 10 21145157 to 21145166 9 + TSS region transcription start site region 3158
Tssr96985 10 21146335 to 21146347 12 - TSS region transcription start site region 96985
Tssr96986 10 21146403 to 21146412 9 - TSS region transcription start site region 96986
Tssr96987 10 21146424 to 21146443 19 - TSS region transcription start site region 96987
Tssr96988 10 21146486 to 21146494 8 - TSS region transcription start site region 96988
Tssr96989 10 21150384 to 21150407 23 - TSS region transcription start site region 96989
Tssr92620 10 21152838 to 21152844 6 + TSS region transcription start site region 92620
Tssr96990 10 21152947 to 21152969 22 - TSS region transcription start site region 96990
Tssr96991 10 21157294 to 21157297 3 - TSS region transcription start site region 96991
Cpgi1357 10 21158820 to 21161831 3011 CpG island CpG island 1357
Tssr92621 10 21159200 to 21159207 7 + TSS region transcription start site region 92621
Tssr96992 10 21160362 to 21160378 16 - TSS region transcription start site region 96992
Tssr96993 10 21160811 to 21160820 9 - TSS region transcription start site region 96993
Tssr96994 10 21160823 to 21160877 54 - TSS region transcription start site region 96994
Tssr96995 10 21160892 to 21160911 19 - TSS region transcription start site region 96995
Tssr96996 10 21160925 to 21160969 44 - TSS region transcription start site region 96996
Tssr92622 10 21161068 to 21161087 19 + TSS region transcription start site region 92622
Tssr3159 10 21161341 to 21161348 7 - TSS region transcription start site region 3159
Tssr96997 10 21161354 to 21161369 15 - TSS region transcription start site region 96997
Tssr96998 10 21161370 to 21161385 15 - TSS region transcription start site region 96998
Tssr96999 10 21161404 to 21161420 16 - TSS region transcription start site region 96999
Tssr97000 10 21161433 to 21161448 15 - TSS region transcription start site region 97000
Tssr97001 10 21161547 to 21161558 11 - TSS region transcription start site region 97001
Tssr97002 10 21161562 to 21161587 25 - TSS region transcription start site region 97002
Tssr97003 10 21161591 to 21161659 68 - TSS region transcription start site region 97003
Gm40608 10 21176057 to 21185931 9874 - lincRNA gene predicted gene, 40608
Gm33619 10 21186921 to 21188618 1697 + lincRNA gene predicted gene, 33619
Tssr92623 10 21186934 to 21186966 32 + TSS region transcription start site region 92623
Tssr92624 10 21192174 to 21192184 10 + TSS region transcription start site region 92624
Gm33671 10 21216496 to 21228458 11962 + lncRNA gene predicted gene, 33671
Gm33728 10 21228529 to 21252242 23713 - lincRNA gene predicted gene, 33728
D10Dcr4 10 21231745 to 21231843 98 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 4
Tssr92625 10 21235477 to 21235488 11 + TSS region transcription start site region 92625
Tssr92626 10 21252396 to 21252424 28 + TSS region transcription start site region 92626
D10Mit124.1 10 21253938 to 21254083 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 124.1
D10Mit124 10 21254056 to 21254193 137 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 124
Tssr92627 10 21289143 to 21289148 5 + TSS region transcription start site region 92627
Gm2467 10 21289219 to 21290228 1009 + pseudogene predicted gene 2467
Cpgi1358 10 21295809 to 21296677 868 CpG island CpG island 1358
Hbs1l 10 21295979 to 21368889 72910 + protein coding gene Hbs1-like (S. cerevisiae)
Tssr92628 10 21295987 to 21296013 26 + TSS region transcription start site region 92628
4930455C13Rik 10 21319088 to 21342055 22967 - antisense lncRNA gene RIKEN cDNA 4930455C13 gene
Tssr97004 10 21342024 to 21342036 12 - TSS region transcription start site region 97004
Tssr97005 10 21342050 to 21342059 9 - TSS region transcription start site region 97005
Gm33803 10 21367840 to 21374758 6918 - lncRNA gene predicted gene, 33803
Tssr92629 10 21377290 to 21377327 37 + TSS region transcription start site region 92629
Aldh8a1 10 21377300 to 21396578 19278 + protein coding gene aldehyde dehydrogenase 8 family, member A1
Cpgi1359 10 21382199 to 21382354 155 CpG island CpG island 1359
Tssr92630 10 21394408 to 21394413 5 + TSS region transcription start site region 92630
Tssr92631 10 21395930 to 21395958 28 + TSS region transcription start site region 92631
Tssr92632 10 21396098 to 21396134 36 + TSS region transcription start site region 92632
Tssr92633 10 21396153 to 21396164 11 + TSS region transcription start site region 92633
Tssr92634 10 21396171 to 21396183 12 + TSS region transcription start site region 92634
Tssr92635 10 21400460 to 21400468 8 + TSS region transcription start site region 92635
Fkbp1a-ps2 10 21410263 to 21410573 310 - pseudogene FK506 binding protein 1a, pseudogene 2
Tssr97006 10 21410579 to 21410587 8 - TSS region transcription start site region 97006
Cpgi1360 10 21419268 to 21419542 274 CpG island CpG island 1360
1700021A07Rik 10 21419358 to 21426565 7207 + lincRNA gene RIKEN cDNA 1700021A07 gene
Tssr92636 10 21419443 to 21419460 17 + TSS region transcription start site region 92636
Tssr92637 10 21419468 to 21419481 13 + TSS region transcription start site region 92637
Gm48385 10 21435833 to 21436235 402 - pseudogene predicted gene, 48385
Gm48386 10 21445181 to 21445636 455 - pseudogene predicted gene, 48386