Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:20340118-21110123

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bclaf1 10 20312078 to 20342644 30566 + protein coding gene BCL2-associated transcription factor 1
Tssr92604 10 20341226 to 20341230 4 + TSS region transcription start site region 92604
Cpgi1350 10 20347370 to 20348189 819 CpG island CpG island 1350
Mtfr2 10 20347770 to 20361304 13534 + protein coding gene mitochondrial fission regulator 2
Tssr92605 10 20347788 to 20347859 71 + TSS region transcription start site region 92605
Tssr92606 10 20348357 to 20348385 28 + TSS region transcription start site region 92606
Tssr92607 10 20353242 to 20353248 6 + TSS region transcription start site region 92607
Gm48537 10 20365010 to 20365437 427 - pseudogene predicted gene, 48537
Tssr96945 10 20365497 to 20365499 2 - TSS region transcription start site region 96945
Pde7b 10 20398004 to 20725078 327074 - protein coding gene phosphodiesterase 7B
Cpgi1351 10 20400005 to 20400621 616 CpG island CpG island 1351
D10Mit213 10 20407439 to 20407588 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 213
Arrd2 10 20407439 to 27014395 6606956 QTL age-related retinal degeneration 2
Ath20 10 20407439 to 20407588 149 QTL atherosclerosis 20
Mbis2 10 20407439 to 56155127 35747688 QTL Mycobacterium bovis-induced systemic lupus erythematosus 2
D10Dcr1 10 20407440 to 20407586 146 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 1
Cpgi1352 10 20431256 to 20431424 168 CpG island CpG island 1352
Tssr3156 10 20441905 to 20441907 2 + TSS region transcription start site region 3156
D10Dcr2 10 20464495 to 20464590 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 2
Tssr96946 10 20505489 to 20505515 26 - TSS region transcription start site region 96946
Tssr96947 10 20505519 to 20505562 43 - TSS region transcription start site region 96947
Tssr96948 10 20505570 to 20505586 16 - TSS region transcription start site region 96948
Tssr96949 10 20505592 to 20505628 36 - TSS region transcription start site region 96949
Tssr92608 10 20505770 to 20505780 10 + TSS region transcription start site region 92608
Gm17229 10 20518634 to 20519777 1143 - pseudogene predicted gene 17229
Tssr92609 10 20534150 to 20534175 25 + TSS region transcription start site region 92609
Tssr96950 10 20540373 to 20540384 11 - TSS region transcription start site region 96950
F730021E23Rik 10 20548028 to 20550255 2227 unclassified gene RIKEN cDNA F730021E23 gene
Tssr96951 10 20548320 to 20548333 13 - TSS region transcription start site region 96951
Tssr96952 10 20548361 to 20548378 17 - TSS region transcription start site region 96952
Tssr96953 10 20553528 to 20553532 4 - TSS region transcription start site region 96953
Tssr96954 10 20554831 to 20554841 10 - TSS region transcription start site region 96954
Tssr92610 10 20562243 to 20562265 22 + TSS region transcription start site region 92610
Tssr96955 10 20589518 to 20589534 16 - TSS region transcription start site region 96955
Tssr96956 10 20596378 to 20596404 26 - TSS region transcription start site region 96956
Tssr96957 10 20607349 to 20607375 26 - TSS region transcription start site region 96957
Gm17230 10 20625786 to 20629655 3869 + pseudogene predicted gene 17230
Tssr96958 10 20665414 to 20665420 6 - TSS region transcription start site region 96958
Tssr96959 10 20689090 to 20689103 13 - TSS region transcription start site region 96959
Tssr96960 10 20689385 to 20689414 29 - TSS region transcription start site region 96960
Tssr96961 10 20692001 to 20692018 17 - TSS region transcription start site region 96961
Tssr96962 10 20697497 to 20697515 18 - TSS region transcription start site region 96962
Tssr96963 10 20697781 to 20697797 16 - TSS region transcription start site region 96963
Tssr96964 10 20720011 to 20720046 35 - TSS region transcription start site region 96964
Tssr96965 10 20721277 to 20721339 62 - TSS region transcription start site region 96965
Tssr96966 10 20724828 to 20724849 21 - TSS region transcription start site region 96966
Tssr96967 10 20724965 to 20724995 30 - TSS region transcription start site region 96967
Tssr96968 10 20725004 to 20725022 18 - TSS region transcription start site region 96968
Tssr96969 10 20725023 to 20725048 25 - TSS region transcription start site region 96969
Tssr96970 10 20725051 to 20725062 11 - TSS region transcription start site region 96970
Tssr96971 10 20725118 to 20725123 5 - TSS region transcription start site region 96971
Tssr96972 10 20725126 to 20725140 14 - TSS region transcription start site region 96972
Gm48651 10 20756117 to 20831303 75186 + lincRNA gene predicted gene, 48651
Gm33510 10 20819921 to 20838792 18871 - lncRNA gene predicted gene, 33510
Tssr96973 10 20839250 to 20839269 19 - TSS region transcription start site region 96973
Rps2-ps3 10 20878110 to 20878896 786 - pseudogene ribosomal protein S2, pseudogene 3
Tssr96974 10 20891515 to 20891555 40 - TSS region transcription start site region 96974
Tssr96975 10 20907046 to 20907083 37 - TSS region transcription start site region 96975
Tssr92611 10 20907326 to 20907350 24 + TSS region transcription start site region 92611
Tssr92612 10 20907394 to 20907412 18 + TSS region transcription start site region 92612
Tssr96976 10 20919728 to 20919734 6 - TSS region transcription start site region 96976
Pgia6 10 20934272 to 20934396 124 QTL proteoglycan induced arthritis 6
D10Mit282 10 20934272 to 20934396 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 282
D10Dcr3 10 20934278 to 20934388 110 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 3
Cpgi1353 10 20952045 to 20953076 1031 CpG island CpG island 1353
Tssr96977 10 20952160 to 20952190 30 - TSS region transcription start site region 96977
Tssr92613 10 20952493 to 20952504 11 + TSS region transcription start site region 92613
Ahi1 10 20952547 to 21080429 127882 + protein coding gene Abelson helper integration site 1
Tssr3157 10 20952566 to 20952577 11 + TSS region transcription start site region 3157
Tssr92614 10 20952582 to 20952593 11 + TSS region transcription start site region 92614
Tssr92615 10 20952597 to 20952683 86 + TSS region transcription start site region 92615
Cpgi1354 10 20954261 to 20954582 321 CpG island CpG island 1354
Tssr92616 10 20959595 to 20959643 48 + TSS region transcription start site region 92616
Tssr92617 10 20959694 to 20959710 16 + TSS region transcription start site region 92617
Cpgi1355 10 20994097 to 20994253 156 CpG island CpG island 1355
Tssr92618 10 21027077 to 21027091 14 + TSS region transcription start site region 92618
Gm10826 10 21030490 to 21033793 3303 - unclassified gene predicted gene 10826
Gm20149 10 21033954 to 21046310 12356 - antisense lncRNA gene predicted gene, 20149
D10Mit283.3 10 21035678 to 21035788 110 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.3
D10Mit283 10 21035769 to 21035893 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 283
D10Mit283.1 10 21035883 to 21036039 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.1
Tssr92619 10 21055010 to 21055021 11 + TSS region transcription start site region 92619
Tssr96978 10 21065775 to 21065808 33 - TSS region transcription start site region 96978
Tssr96979 10 21083560 to 21083573 13 - TSS region transcription start site region 96979
Gm48189 10 21100560 to 21102226 1666 + lincRNA gene predicted gene, 48189