Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:20302439-27119395

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710 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmiq9 10 13000000 to 25000000 12000000 QTL body mass index QTL 9
4933406P04Rik 10 20310506 to 20312294 1788 - lincRNA gene RIKEN cDNA 4933406P04 gene
Cpgi1349 10 20311828 to 20313327 1499 CpG island CpG island 1349
D10Csu2 10 20311953 to 20312170 217 DNA segment DNA segment, Chr 10, Central Connecticut State University 2
Bclaf1 10 20312078 to 20342644 30566 + protein coding gene BCL2-associated transcription factor 1
Tssr96944 10 20312239 to 20312278 39 - TSS region transcription start site region 96944
Tssr92593 10 20312363 to 20312400 37 + TSS region transcription start site region 92593
Tssr92594 10 20312461 to 20312492 31 + TSS region transcription start site region 92594
Tssr92595 10 20312498 to 20312518 20 + TSS region transcription start site region 92595
Tssr92596 10 20312524 to 20312539 15 + TSS region transcription start site region 92596
Tssr92597 10 20312955 to 20312976 21 + TSS region transcription start site region 92597
Tssr92598 10 20320148 to 20320149 1 + TSS region transcription start site region 92598
Tssr92599 10 20325375 to 20325399 24 + TSS region transcription start site region 92599
D10Csu3 10 20325405 to 20325982 577 DNA segment DNA segment, Chr 10, Central Connecticut State University 3
Tssr92600 10 20326958 to 20326963 5 + TSS region transcription start site region 92600
Tssr92601 10 20332101 to 20332132 31 + TSS region transcription start site region 92601
Tssr92602 10 20332160 to 20332194 34 + TSS region transcription start site region 92602
Tssr92603 10 20339751 to 20339767 16 + TSS region transcription start site region 92603
Tssr92604 10 20341226 to 20341230 4 + TSS region transcription start site region 92604
Cpgi1350 10 20347370 to 20348189 819 CpG island CpG island 1350
Mtfr2 10 20347770 to 20361304 13534 + protein coding gene mitochondrial fission regulator 2
Tssr92605 10 20347788 to 20347859 71 + TSS region transcription start site region 92605
Tssr92606 10 20348357 to 20348385 28 + TSS region transcription start site region 92606
Tssr92607 10 20353242 to 20353248 6 + TSS region transcription start site region 92607
Gm48537 10 20365010 to 20365437 427 - pseudogene predicted gene, 48537
Tssr96945 10 20365497 to 20365499 2 - TSS region transcription start site region 96945
Pde7b 10 20398004 to 20725078 327074 - protein coding gene phosphodiesterase 7B
Cpgi1351 10 20400005 to 20400621 616 CpG island CpG island 1351
Mbis2 10 20407439 to 56155127 35747688 QTL Mycobacterium bovis-induced systemic lupus erythematosus 2
Ath20 10 20407439 to 20407588 149 QTL atherosclerosis 20
D10Mit213 10 20407439 to 20407588 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 213
Arrd2 10 20407439 to 27014395 6606956 QTL age-related retinal degeneration 2
D10Dcr1 10 20407440 to 20407586 146 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 1
Cpgi1352 10 20431256 to 20431424 168 CpG island CpG island 1352
Tssr3156 10 20441905 to 20441907 2 + TSS region transcription start site region 3156
D10Dcr2 10 20464495 to 20464590 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 2
Tssr96946 10 20505489 to 20505515 26 - TSS region transcription start site region 96946
Tssr96947 10 20505519 to 20505562 43 - TSS region transcription start site region 96947
Tssr96948 10 20505570 to 20505586 16 - TSS region transcription start site region 96948
Tssr96949 10 20505592 to 20505628 36 - TSS region transcription start site region 96949
Tssr92608 10 20505770 to 20505780 10 + TSS region transcription start site region 92608
Gm17229 10 20518634 to 20519777 1143 - pseudogene predicted gene 17229
Tssr92609 10 20534150 to 20534175 25 + TSS region transcription start site region 92609
Tssr96950 10 20540373 to 20540384 11 - TSS region transcription start site region 96950
F730021E23Rik 10 20548028 to 20550255 2227 unclassified gene RIKEN cDNA F730021E23 gene
Tssr96951 10 20548320 to 20548333 13 - TSS region transcription start site region 96951
Tssr96952 10 20548361 to 20548378 17 - TSS region transcription start site region 96952
Tssr96953 10 20553528 to 20553532 4 - TSS region transcription start site region 96953
Tssr96954 10 20554831 to 20554841 10 - TSS region transcription start site region 96954
Tssr92610 10 20562243 to 20562265 22 + TSS region transcription start site region 92610
Tssr96955 10 20589518 to 20589534 16 - TSS region transcription start site region 96955
Tssr96956 10 20596378 to 20596404 26 - TSS region transcription start site region 96956
Tssr96957 10 20607349 to 20607375 26 - TSS region transcription start site region 96957
Gm17230 10 20625786 to 20629655 3869 + pseudogene predicted gene 17230
Tssr96958 10 20665414 to 20665420 6 - TSS region transcription start site region 96958
Tssr96959 10 20689090 to 20689103 13 - TSS region transcription start site region 96959
Tssr96960 10 20689385 to 20689414 29 - TSS region transcription start site region 96960
Tssr96961 10 20692001 to 20692018 17 - TSS region transcription start site region 96961
Tssr96962 10 20697497 to 20697515 18 - TSS region transcription start site region 96962
Tssr96963 10 20697781 to 20697797 16 - TSS region transcription start site region 96963
Tssr96964 10 20720011 to 20720046 35 - TSS region transcription start site region 96964
Tssr96965 10 20721277 to 20721339 62 - TSS region transcription start site region 96965
Tssr96966 10 20724828 to 20724849 21 - TSS region transcription start site region 96966
Tssr96967 10 20724965 to 20724995 30 - TSS region transcription start site region 96967
Tssr96968 10 20725004 to 20725022 18 - TSS region transcription start site region 96968
Tssr96969 10 20725023 to 20725048 25 - TSS region transcription start site region 96969
Tssr96970 10 20725051 to 20725062 11 - TSS region transcription start site region 96970
Tssr96971 10 20725118 to 20725123 5 - TSS region transcription start site region 96971
Tssr96972 10 20725126 to 20725140 14 - TSS region transcription start site region 96972
Gm48651 10 20756117 to 20831303 75186 + lincRNA gene predicted gene, 48651
Gm33510 10 20819921 to 20838792 18871 - lncRNA gene predicted gene, 33510
Tssr96973 10 20839250 to 20839269 19 - TSS region transcription start site region 96973
Rps2-ps3 10 20878110 to 20878896 786 - pseudogene ribosomal protein S2, pseudogene 3
Tssr96974 10 20891515 to 20891555 40 - TSS region transcription start site region 96974
Tssr96975 10 20907046 to 20907083 37 - TSS region transcription start site region 96975
Tssr92611 10 20907326 to 20907350 24 + TSS region transcription start site region 92611
Tssr92612 10 20907394 to 20907412 18 + TSS region transcription start site region 92612
Tssr96976 10 20919728 to 20919734 6 - TSS region transcription start site region 96976
Pgia6 10 20934272 to 20934396 124 QTL proteoglycan induced arthritis 6
D10Mit282 10 20934272 to 20934396 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 282
D10Dcr3 10 20934278 to 20934388 110 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 3
Cpgi1353 10 20952045 to 20953076 1031 CpG island CpG island 1353
Tssr96977 10 20952160 to 20952190 30 - TSS region transcription start site region 96977
Tssr92613 10 20952493 to 20952504 11 + TSS region transcription start site region 92613
Ahi1 10 20952547 to 21080429 127882 + protein coding gene Abelson helper integration site 1
Tssr3157 10 20952566 to 20952577 11 + TSS region transcription start site region 3157
Tssr92614 10 20952582 to 20952593 11 + TSS region transcription start site region 92614
Tssr92615 10 20952597 to 20952683 86 + TSS region transcription start site region 92615
Cpgi1354 10 20954261 to 20954582 321 CpG island CpG island 1354
Tssr92616 10 20959595 to 20959643 48 + TSS region transcription start site region 92616
Tssr92617 10 20959694 to 20959710 16 + TSS region transcription start site region 92617
Cpgi1355 10 20994097 to 20994253 156 CpG island CpG island 1355
Tssr92618 10 21027077 to 21027091 14 + TSS region transcription start site region 92618
Gm10826 10 21030490 to 21033793 3303 - unclassified gene predicted gene 10826
Gm20149 10 21033954 to 21046310 12356 - antisense lncRNA gene predicted gene, 20149
D10Mit283.3 10 21035678 to 21035788 110 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.3
D10Mit283 10 21035769 to 21035893 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 283
D10Mit283.1 10 21035883 to 21036039 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.1
Tssr92619 10 21055010 to 21055021 11 + TSS region transcription start site region 92619
Tssr96978 10 21065775 to 21065808 33 - TSS region transcription start site region 96978
Tssr96979 10 21083560 to 21083573 13 - TSS region transcription start site region 96979
Gm48189 10 21100560 to 21102226 1666 + lincRNA gene predicted gene, 48189
Myb 10 21124935 to 21160984 36049 - protein coding gene myeloblastosis oncogene
Tssr96980 10 21125254 to 21125264 10 - TSS region transcription start site region 96980
Tssr96981 10 21125437 to 21125450 13 - TSS region transcription start site region 96981
Tssr96982 10 21125968 to 21125972 4 - TSS region transcription start site region 96982
Tssr96983 10 21127707 to 21127708 1 - TSS region transcription start site region 96983
Tssr96984 10 21143051 to 21143062 11 - TSS region transcription start site region 96984
Cpgi1356 10 21144964 to 21145206 242 CpG island CpG island 1356
Gm26577 10 21145094 to 21154374 9280 + antisense lncRNA gene predicted gene, 26577
Tssr3158 10 21145157 to 21145166 9 + TSS region transcription start site region 3158
Tssr96985 10 21146335 to 21146347 12 - TSS region transcription start site region 96985
Tssr96986 10 21146403 to 21146412 9 - TSS region transcription start site region 96986
Tssr96987 10 21146424 to 21146443 19 - TSS region transcription start site region 96987
Tssr96988 10 21146486 to 21146494 8 - TSS region transcription start site region 96988
Tssr96989 10 21150384 to 21150407 23 - TSS region transcription start site region 96989
Tssr92620 10 21152838 to 21152844 6 + TSS region transcription start site region 92620
Tssr96990 10 21152947 to 21152969 22 - TSS region transcription start site region 96990
Tssr96991 10 21157294 to 21157297 3 - TSS region transcription start site region 96991
Cpgi1357 10 21158820 to 21161831 3011 CpG island CpG island 1357
Tssr92621 10 21159200 to 21159207 7 + TSS region transcription start site region 92621
Tssr96992 10 21160362 to 21160378 16 - TSS region transcription start site region 96992
Tssr96993 10 21160811 to 21160820 9 - TSS region transcription start site region 96993
Tssr96994 10 21160823 to 21160877 54 - TSS region transcription start site region 96994
Tssr96995 10 21160892 to 21160911 19 - TSS region transcription start site region 96995
Tssr96996 10 21160925 to 21160969 44 - TSS region transcription start site region 96996
Tssr92622 10 21161068 to 21161087 19 + TSS region transcription start site region 92622
Tssr3159 10 21161341 to 21161348 7 - TSS region transcription start site region 3159
Tssr96997 10 21161354 to 21161369 15 - TSS region transcription start site region 96997
Tssr96998 10 21161370 to 21161385 15 - TSS region transcription start site region 96998
Tssr96999 10 21161404 to 21161420 16 - TSS region transcription start site region 96999
Tssr97000 10 21161433 to 21161448 15 - TSS region transcription start site region 97000
Tssr97001 10 21161547 to 21161558 11 - TSS region transcription start site region 97001
Tssr97002 10 21161562 to 21161587 25 - TSS region transcription start site region 97002
Tssr97003 10 21161591 to 21161659 68 - TSS region transcription start site region 97003
Gm40608 10 21176057 to 21185931 9874 - lincRNA gene predicted gene, 40608
Gm33619 10 21186921 to 21188618 1697 + lincRNA gene predicted gene, 33619
Tssr92623 10 21186934 to 21186966 32 + TSS region transcription start site region 92623
Tssr92624 10 21192174 to 21192184 10 + TSS region transcription start site region 92624
Gm33671 10 21216496 to 21228458 11962 + lncRNA gene predicted gene, 33671
Gm33728 10 21228529 to 21252242 23713 - lincRNA gene predicted gene, 33728
D10Dcr4 10 21231745 to 21231843 98 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 4
Tssr92625 10 21235477 to 21235488 11 + TSS region transcription start site region 92625
Tssr92626 10 21252396 to 21252424 28 + TSS region transcription start site region 92626
D10Mit124.1 10 21253938 to 21254083 145 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 124.1
D10Mit124 10 21254056 to 21254193 137 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 124
Tssr92627 10 21289143 to 21289148 5 + TSS region transcription start site region 92627
Gm2467 10 21289219 to 21290228 1009 + pseudogene predicted gene 2467
Cpgi1358 10 21295809 to 21296677 868 CpG island CpG island 1358
Hbs1l 10 21295979 to 21368889 72910 + protein coding gene Hbs1-like (S. cerevisiae)
Tssr92628 10 21295987 to 21296013 26 + TSS region transcription start site region 92628
4930455C13Rik 10 21319088 to 21342055 22967 - antisense lncRNA gene RIKEN cDNA 4930455C13 gene
Tssr97004 10 21342024 to 21342036 12 - TSS region transcription start site region 97004
Tssr97005 10 21342050 to 21342059 9 - TSS region transcription start site region 97005
Gm33803 10 21367840 to 21374758 6918 - lncRNA gene predicted gene, 33803
Tssr92629 10 21377290 to 21377327 37 + TSS region transcription start site region 92629
Aldh8a1 10 21377300 to 21396578 19278 + protein coding gene aldehyde dehydrogenase 8 family, member A1
Cpgi1359 10 21382199 to 21382354 155 CpG island CpG island 1359
Tssr92630 10 21394408 to 21394413 5 + TSS region transcription start site region 92630
Tssr92631 10 21395930 to 21395958 28 + TSS region transcription start site region 92631
Tssr92632 10 21396098 to 21396134 36 + TSS region transcription start site region 92632
Tssr92633 10 21396153 to 21396164 11 + TSS region transcription start site region 92633
Tssr92634 10 21396171 to 21396183 12 + TSS region transcription start site region 92634
Tssr92635 10 21400460 to 21400468 8 + TSS region transcription start site region 92635
Fkbp1a-ps2 10 21410263 to 21410573 310 - pseudogene FK506 binding protein 1a, pseudogene 2
Tssr97006 10 21410579 to 21410587 8 - TSS region transcription start site region 97006
Cpgi1360 10 21419268 to 21419542 274 CpG island CpG island 1360
1700021A07Rik 10 21419358 to 21426565 7207 + lincRNA gene RIKEN cDNA 1700021A07 gene
Tssr92636 10 21419443 to 21419460 17 + TSS region transcription start site region 92636
Tssr92637 10 21419468 to 21419481 13 + TSS region transcription start site region 92637
Gm48385 10 21435833 to 21436235 402 - pseudogene predicted gene, 48385
Gm48386 10 21445181 to 21445636 455 - pseudogene predicted gene, 48386
Cpgi1361 10 21470840 to 21471060 220 CpG island CpG island 1361
Eae15 10 21532255 to 21532377 122 QTL experimental allergic encephalomyelitis susceptibility 15
D10Mit2 10 21532255 to 21532377 122 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 2
D10Mit17 10 21532255 to 21532379 124 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 17
D10Dcr5 10 21532267 to 21532383 116 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 5
Gm33945 10 21559471 to 21573643 14172 - lncRNA gene predicted gene, 33945
Tssr92638 10 21571727 to 21571737 10 + TSS region transcription start site region 92638
Tssr92639 10 21571747 to 21571754 7 + TSS region transcription start site region 92639
Gm33892 10 21571833 to 21575201 3368 + lncRNA gene predicted gene, 33892
Tssr92640 10 21592135 to 21592151 16 + TSS region transcription start site region 92640
Cpgi1362 10 21593049 to 21593487 438 CpG island CpG island 1362
Tssr92641 10 21593112 to 21593122 10 + TSS region transcription start site region 92641
Tssr92642 10 21593126 to 21593137 11 + TSS region transcription start site region 92642
Tssr92643 10 21593143 to 21593146 3 + TSS region transcription start site region 92643
1700020N01Rik 10 21593145 to 21622375 29230 + protein coding gene RIKEN cDNA 1700020N01 gene
Tssr92644 10 21593151 to 21593181 30 + TSS region transcription start site region 92644
Tssr92645 10 21593186 to 21593187 1 + TSS region transcription start site region 92645
Tssr92646 10 21593191 to 21593197 6 + TSS region transcription start site region 92646
Tssr92647 10 21669216 to 21669226 10 + TSS region transcription start site region 92647
Tssr92648 10 21690362 to 21690373 11 + TSS region transcription start site region 92648
Gm5420 10 21690845 to 21693978 3133 + lincRNA gene predicted gene 5420
D10Mit16 10 21715293 to 21715442 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 16
Lmblgq4 10 21715293 to 68255809 46540516 QTL limb length QTL 4
Gm29323 10 21743867 to 21747006 3139 + lincRNA gene predicted gene 29323
Tssr97007 10 21753919 to 21753930 11 - TSS region transcription start site region 97007
Tssr97008 10 21785853 to 21785860 7 - TSS region transcription start site region 97008
Tssr92649 10 21827244 to 21827255 11 + TSS region transcription start site region 92649
Platr6 10 21830499 to 21844851 14352 - lincRNA gene pluripotency associated transcript 6