Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:19943528-21163532

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181 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Map3k5 10 19934472 to 20142753 208281 + protein coding gene mitogen-activated protein kinase kinase kinase 5
Tssr92564 10 19957117 to 19957123 6 + TSS region transcription start site region 92564
Tssr92565 10 20010358 to 20010361 3 + TSS region transcription start site region 92565
Tssr92566 10 20104864 to 20104883 19 + TSS region transcription start site region 92566
Tssr92567 10 20141882 to 20141888 6 + TSS region transcription start site region 92567
Cpgi1347 10 20148296 to 20149832 1536 CpG island CpG island 1347
Tssr92568 10 20148457 to 20148478 21 + TSS region transcription start site region 92568
Tssr92569 10 20148677 to 20148688 11 + TSS region transcription start site region 92569
Tssr92570 10 20148693 to 20148705 12 + TSS region transcription start site region 92570
Tssr3154 10 20148888 to 20148901 13 + TSS region transcription start site region 3154
Map7 10 20148920 to 20281590 132670 + protein coding gene microtubule-associated protein 7
Tssr92571 10 20148978 to 20149014 36 + TSS region transcription start site region 92571
Tssr92572 10 20170725 to 20170758 33 + TSS region transcription start site region 92572
Tssr92573 10 20170761 to 20170796 35 + TSS region transcription start site region 92573
1700026H06Rik 10 20170779 to 20172767 1988 lncRNA gene RIKEN cDNA 1700026H06 gene
Tssr92574 10 20170803 to 20170821 18 + TSS region transcription start site region 92574
Tssr92575 10 20170823 to 20170834 11 + TSS region transcription start site region 92575
Tssr96940 10 20170849 to 20170854 5 - TSS region transcription start site region 96940
Cpgi1348 10 20170875 to 20171044 169 CpG island CpG island 1348
Tssr92576 10 20171003 to 20171045 42 + TSS region transcription start site region 92576
Tssr92577 10 20171089 to 20171100 11 + TSS region transcription start site region 92577
Tssr92578 10 20171902 to 20171927 25 + TSS region transcription start site region 92578
Tssr92579 10 20171956 to 20171975 19 + TSS region transcription start site region 92579
Tssr92580 10 20172001 to 20172012 11 + TSS region transcription start site region 92580
Tssr3155 10 20175305 to 20175310 5 - TSS region transcription start site region 3155
Tssr96941 10 20175314 to 20175322 8 - TSS region transcription start site region 96941
Tssr96942 10 20175329 to 20175346 17 - TSS region transcription start site region 96942
Gm46213 10 20179014 to 20188659 9645 + lncRNA gene predicted gene, 46213
Tssr92581 10 20185424 to 20185425 1 + TSS region transcription start site region 92581
4930405J17Rik 10 20199240 to 20201838 2598 - antisense lncRNA gene RIKEN cDNA 4930405J17 gene
Tssr92582 10 20203605 to 20203616 11 + TSS region transcription start site region 92582
Tssr92583 10 20204859 to 20204900 41 + TSS region transcription start site region 92583
Tssr92584 10 20205249 to 20205282 33 + TSS region transcription start site region 92584
Tssr92585 10 20205295 to 20205323 28 + TSS region transcription start site region 92585
Tssr92586 10 20205356 to 20205366 10 + TSS region transcription start site region 92586
Tssr96943 10 20205892 to 20205929 37 - TSS region transcription start site region 96943
Tssr92587 10 20208435 to 20208446 11 + TSS region transcription start site region 92587
Rpl32l 10 20208490 to 20208888 398 + protein coding gene ribosomal protein L32-like
Gm46214 10 20214843 to 20222892 8049 - lncRNA gene predicted gene, 46214
Tssr92588 10 20229762 to 20229764 2 + TSS region transcription start site region 92588
Tssr92589 10 20229779 to 20229802 23 + TSS region transcription start site region 92589
Gm48249 10 20267049 to 20286647 19598 - antisense lncRNA gene predicted gene, 48249
Tssr92590 10 20267219 to 20267229 10 + TSS region transcription start site region 92590
Tssr92591 10 20267244 to 20267266 22 + TSS region transcription start site region 92591
Tssr92592 10 20267268 to 20267310 42 + TSS region transcription start site region 92592
Gm30285 10 20292785 to 20293206 421 + pseudogene predicted gene, 30285
Mir6413 10 20297581 to 20297688 107 - miRNA gene microRNA 6413
4933406P04Rik 10 20310506 to 20312294 1788 - lincRNA gene RIKEN cDNA 4933406P04 gene
Cpgi1349 10 20311828 to 20313327 1499 CpG island CpG island 1349
D10Csu2 10 20311953 to 20312170 217 DNA segment DNA segment, Chr 10, Central Connecticut State University 2
Bclaf1 10 20312078 to 20342644 30566 + protein coding gene BCL2-associated transcription factor 1
Tssr96944 10 20312239 to 20312278 39 - TSS region transcription start site region 96944
Tssr92593 10 20312363 to 20312400 37 + TSS region transcription start site region 92593
Tssr92594 10 20312461 to 20312492 31 + TSS region transcription start site region 92594
Tssr92595 10 20312498 to 20312518 20 + TSS region transcription start site region 92595
Tssr92596 10 20312524 to 20312539 15 + TSS region transcription start site region 92596
Tssr92597 10 20312955 to 20312976 21 + TSS region transcription start site region 92597
Tssr92598 10 20320148 to 20320149 1 + TSS region transcription start site region 92598
Tssr92599 10 20325375 to 20325399 24 + TSS region transcription start site region 92599
D10Csu3 10 20325405 to 20325982 577 DNA segment DNA segment, Chr 10, Central Connecticut State University 3
Tssr92600 10 20326958 to 20326963 5 + TSS region transcription start site region 92600
Tssr92601 10 20332101 to 20332132 31 + TSS region transcription start site region 92601
Tssr92602 10 20332160 to 20332194 34 + TSS region transcription start site region 92602
Tssr92603 10 20339751 to 20339767 16 + TSS region transcription start site region 92603
Tssr92604 10 20341226 to 20341230 4 + TSS region transcription start site region 92604
Cpgi1350 10 20347370 to 20348189 819 CpG island CpG island 1350
Mtfr2 10 20347770 to 20361304 13534 + protein coding gene mitochondrial fission regulator 2
Tssr92605 10 20347788 to 20347859 71 + TSS region transcription start site region 92605
Tssr92606 10 20348357 to 20348385 28 + TSS region transcription start site region 92606
Tssr92607 10 20353242 to 20353248 6 + TSS region transcription start site region 92607
Gm48537 10 20365010 to 20365437 427 - pseudogene predicted gene, 48537
Tssr96945 10 20365497 to 20365499 2 - TSS region transcription start site region 96945
Pde7b 10 20398004 to 20725078 327074 - protein coding gene phosphodiesterase 7B
Cpgi1351 10 20400005 to 20400621 616 CpG island CpG island 1351
D10Mit213 10 20407439 to 20407588 149 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 213
Ath20 10 20407439 to 20407588 149 QTL atherosclerosis 20
Arrd2 10 20407439 to 27014395 6606956 QTL age-related retinal degeneration 2
Mbis2 10 20407439 to 56155127 35747688 QTL Mycobacterium bovis-induced systemic lupus erythematosus 2
D10Dcr1 10 20407440 to 20407586 146 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 1
Cpgi1352 10 20431256 to 20431424 168 CpG island CpG island 1352
Tssr3156 10 20441905 to 20441907 2 + TSS region transcription start site region 3156
D10Dcr2 10 20464495 to 20464590 95 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 2
Tssr96946 10 20505489 to 20505515 26 - TSS region transcription start site region 96946
Tssr96947 10 20505519 to 20505562 43 - TSS region transcription start site region 96947
Tssr96948 10 20505570 to 20505586 16 - TSS region transcription start site region 96948
Tssr96949 10 20505592 to 20505628 36 - TSS region transcription start site region 96949
Tssr92608 10 20505770 to 20505780 10 + TSS region transcription start site region 92608
Gm17229 10 20518634 to 20519777 1143 - pseudogene predicted gene 17229
Tssr92609 10 20534150 to 20534175 25 + TSS region transcription start site region 92609
Tssr96950 10 20540373 to 20540384 11 - TSS region transcription start site region 96950
F730021E23Rik 10 20548028 to 20550255 2227 unclassified gene RIKEN cDNA F730021E23 gene
Tssr96951 10 20548320 to 20548333 13 - TSS region transcription start site region 96951
Tssr96952 10 20548361 to 20548378 17 - TSS region transcription start site region 96952
Tssr96953 10 20553528 to 20553532 4 - TSS region transcription start site region 96953
Tssr96954 10 20554831 to 20554841 10 - TSS region transcription start site region 96954
Tssr92610 10 20562243 to 20562265 22 + TSS region transcription start site region 92610
Tssr96955 10 20589518 to 20589534 16 - TSS region transcription start site region 96955
Tssr96956 10 20596378 to 20596404 26 - TSS region transcription start site region 96956
Tssr96957 10 20607349 to 20607375 26 - TSS region transcription start site region 96957
Gm17230 10 20625786 to 20629655 3869 + pseudogene predicted gene 17230
Tssr96958 10 20665414 to 20665420 6 - TSS region transcription start site region 96958
Tssr96959 10 20689090 to 20689103 13 - TSS region transcription start site region 96959
Tssr96960 10 20689385 to 20689414 29 - TSS region transcription start site region 96960
Tssr96961 10 20692001 to 20692018 17 - TSS region transcription start site region 96961
Tssr96962 10 20697497 to 20697515 18 - TSS region transcription start site region 96962
Tssr96963 10 20697781 to 20697797 16 - TSS region transcription start site region 96963
Tssr96964 10 20720011 to 20720046 35 - TSS region transcription start site region 96964
Tssr96965 10 20721277 to 20721339 62 - TSS region transcription start site region 96965
Tssr96966 10 20724828 to 20724849 21 - TSS region transcription start site region 96966
Tssr96967 10 20724965 to 20724995 30 - TSS region transcription start site region 96967
Tssr96968 10 20725004 to 20725022 18 - TSS region transcription start site region 96968
Tssr96969 10 20725023 to 20725048 25 - TSS region transcription start site region 96969
Tssr96970 10 20725051 to 20725062 11 - TSS region transcription start site region 96970
Tssr96971 10 20725118 to 20725123 5 - TSS region transcription start site region 96971
Tssr96972 10 20725126 to 20725140 14 - TSS region transcription start site region 96972
Gm48651 10 20756117 to 20831303 75186 + lincRNA gene predicted gene, 48651
Gm33510 10 20819921 to 20838792 18871 - lncRNA gene predicted gene, 33510
Tssr96973 10 20839250 to 20839269 19 - TSS region transcription start site region 96973
Rps2-ps3 10 20878110 to 20878896 786 - pseudogene ribosomal protein S2, pseudogene 3
Tssr96974 10 20891515 to 20891555 40 - TSS region transcription start site region 96974
Tssr96975 10 20907046 to 20907083 37 - TSS region transcription start site region 96975
Tssr92611 10 20907326 to 20907350 24 + TSS region transcription start site region 92611
Tssr92612 10 20907394 to 20907412 18 + TSS region transcription start site region 92612
Tssr96976 10 20919728 to 20919734 6 - TSS region transcription start site region 96976
Pgia6 10 20934272 to 20934396 124 QTL proteoglycan induced arthritis 6
D10Mit282 10 20934272 to 20934396 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 282
D10Dcr3 10 20934278 to 20934388 110 DNA segment DNA Segment, Chr 10, Derry C. Roopenian 3
Cpgi1353 10 20952045 to 20953076 1031 CpG island CpG island 1353
Tssr96977 10 20952160 to 20952190 30 - TSS region transcription start site region 96977
Tssr92613 10 20952493 to 20952504 11 + TSS region transcription start site region 92613
Ahi1 10 20952547 to 21080429 127882 + protein coding gene Abelson helper integration site 1
Tssr3157 10 20952566 to 20952577 11 + TSS region transcription start site region 3157
Tssr92614 10 20952582 to 20952593 11 + TSS region transcription start site region 92614
Tssr92615 10 20952597 to 20952683 86 + TSS region transcription start site region 92615
Cpgi1354 10 20954261 to 20954582 321 CpG island CpG island 1354
Tssr92616 10 20959595 to 20959643 48 + TSS region transcription start site region 92616
Tssr92617 10 20959694 to 20959710 16 + TSS region transcription start site region 92617
Cpgi1355 10 20994097 to 20994253 156 CpG island CpG island 1355
Tssr92618 10 21027077 to 21027091 14 + TSS region transcription start site region 92618
Gm10826 10 21030490 to 21033793 3303 - unclassified gene predicted gene 10826
Gm20149 10 21033954 to 21046310 12356 - antisense lncRNA gene predicted gene, 20149
D10Mit283.3 10 21035678 to 21035788 110 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.3
D10Mit283 10 21035769 to 21035893 124 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 283
D10Mit283.1 10 21035883 to 21036039 156 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 283.1
Tssr92619 10 21055010 to 21055021 11 + TSS region transcription start site region 92619
Tssr96978 10 21065775 to 21065808 33 - TSS region transcription start site region 96978
Tssr96979 10 21083560 to 21083573 13 - TSS region transcription start site region 96979
Gm48189 10 21100560 to 21102226 1666 + lincRNA gene predicted gene, 48189
Myb 10 21124935 to 21160984 36049 - protein coding gene myeloblastosis oncogene
Tssr96980 10 21125254 to 21125264 10 - TSS region transcription start site region 96980
Tssr96981 10 21125437 to 21125450 13 - TSS region transcription start site region 96981
Tssr96982 10 21125968 to 21125972 4 - TSS region transcription start site region 96982
Tssr96983 10 21127707 to 21127708 1 - TSS region transcription start site region 96983
Tssr96984 10 21143051 to 21143062 11 - TSS region transcription start site region 96984
Cpgi1356 10 21144964 to 21145206 242 CpG island CpG island 1356
Gm26577 10 21145094 to 21154374 9280 + antisense lncRNA gene predicted gene, 26577
Tssr3158 10 21145157 to 21145166 9 + TSS region transcription start site region 3158
Tssr96985 10 21146335 to 21146347 12 - TSS region transcription start site region 96985
Tssr96986 10 21146403 to 21146412 9 - TSS region transcription start site region 96986
Tssr96987 10 21146424 to 21146443 19 - TSS region transcription start site region 96987
Tssr96988 10 21146486 to 21146494 8 - TSS region transcription start site region 96988
Tssr96989 10 21150384 to 21150407 23 - TSS region transcription start site region 96989
Tssr92620 10 21152838 to 21152844 6 + TSS region transcription start site region 92620
Tssr96990 10 21152947 to 21152969 22 - TSS region transcription start site region 96990
Tssr96991 10 21157294 to 21157297 3 - TSS region transcription start site region 96991
Cpgi1357 10 21158820 to 21161831 3011 CpG island CpG island 1357
Tssr92621 10 21159200 to 21159207 7 + TSS region transcription start site region 92621
Tssr96992 10 21160362 to 21160378 16 - TSS region transcription start site region 96992
Tssr96993 10 21160811 to 21160820 9 - TSS region transcription start site region 96993
Tssr96994 10 21160823 to 21160877 54 - TSS region transcription start site region 96994
Tssr96995 10 21160892 to 21160911 19 - TSS region transcription start site region 96995
Tssr96996 10 21160925 to 21160969 44 - TSS region transcription start site region 96996
Tssr92622 10 21161068 to 21161087 19 + TSS region transcription start site region 92622
Tssr3159 10 21161341 to 21161348 7 - TSS region transcription start site region 3159
Tssr96997 10 21161354 to 21161369 15 - TSS region transcription start site region 96997
Tssr96998 10 21161370 to 21161385 15 - TSS region transcription start site region 96998
Tssr96999 10 21161404 to 21161420 16 - TSS region transcription start site region 96999
Tssr97000 10 21161433 to 21161448 15 - TSS region transcription start site region 97000
Tssr97001 10 21161547 to 21161558 11 - TSS region transcription start site region 97001
Tssr97002 10 21161562 to 21161587 25 - TSS region transcription start site region 97002
Tssr97003 10 21161591 to 21161659 68 - TSS region transcription start site region 97003