Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:19396152-20038704

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D10Mit281 10 19444878 to 19444992 114 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 281
Tssr92540 10 19486688 to 19486729 41 + TSS region transcription start site region 92540
Gm33104 10 19486715 to 19507311 20596 + lincRNA gene predicted gene, 33104
Tssr92541 10 19494637 to 19494649 12 + TSS region transcription start site region 92541
Tssr92542 10 19494708 to 19494738 30 + TSS region transcription start site region 92542
Tssr96913 10 19506069 to 19506080 11 - TSS region transcription start site region 96913
Tssr96914 10 19506085 to 19506102 17 - TSS region transcription start site region 96914
Tssr92543 10 19506246 to 19506257 11 + TSS region transcription start site region 92543
Gm48563 10 19519302 to 19522650 3348 - unclassified gene predicted gene, 48563
Tssr92544 10 19531767 to 19531778 11 + TSS region transcription start site region 92544
Tssr96915 10 19577562 to 19577589 27 - TSS region transcription start site region 96915
Tssr96916 10 19583095 to 19583109 14 - TSS region transcription start site region 96916
Tssr96917 10 19584236 to 19584253 17 - TSS region transcription start site region 96917
Tssr3148 10 19589686 to 19589698 12 + TSS region transcription start site region 3148
Tssr96918 10 19591470 to 19591476 6 - TSS region transcription start site region 96918
Cpgi1342 10 19591657 to 19592410 753 CpG island CpG island 1342
Tssr96919 10 19591679 to 19591692 13 - TSS region transcription start site region 96919
Tssr96920 10 19591701 to 19591712 11 - TSS region transcription start site region 96920
Tssr96921 10 19591852 to 19591856 4 - TSS region transcription start site region 96921
Tssr92545 10 19591952 to 19592087 135 + TSS region transcription start site region 92545
Ifngr1 10 19591958 to 19610225 18267 + protein coding gene interferon gamma receptor 1
Tssr92546 10 19592422 to 19592448 26 + TSS region transcription start site region 92546
Tssr96922 10 19592744 to 19592773 29 - TSS region transcription start site region 96922
Tssr96923 10 19594596 to 19594616 20 - TSS region transcription start site region 96923
Tssr96924 10 19594688 to 19594701 13 - TSS region transcription start site region 96924
Tssr96925 10 19594718 to 19594735 17 - TSS region transcription start site region 96925
Tssr96926 10 19598168 to 19598183 15 - TSS region transcription start site region 96926
Tssr92547 10 19598388 to 19598393 5 + TSS region transcription start site region 92547
Tssr92548 10 19606226 to 19606278 52 + TSS region transcription start site region 92548
Tssr92549 10 19607258 to 19607286 28 + TSS region transcription start site region 92549
Tssr96927 10 19609202 to 19609214 12 - TSS region transcription start site region 96927
Tssr96928 10 19609223 to 19609246 23 - TSS region transcription start site region 96928
Tssr92550 10 19609226 to 19609285 59 + TSS region transcription start site region 92550
Tssr96929 10 19609278 to 19609299 21 - TSS region transcription start site region 96929
Tssr92551 10 19610013 to 19610015 2 + TSS region transcription start site region 92551
Tssr92552 10 19621992 to 19622004 12 + TSS region transcription start site region 92552
Tssr92553 10 19622014 to 19622035 21 + TSS region transcription start site region 92553
Il22ra2 10 19622028 to 19634681 12653 + protein coding gene interleukin 22 receptor, alpha 2
Tssr96930 10 19632171 to 19632174 3 - TSS region transcription start site region 96930
9230106D20Rik 10 19644750 to 19660801 16051 + lincRNA gene RIKEN cDNA 9230106D20 gene
Tssr3149 10 19644990 to 19644994 4 + TSS region transcription start site region 3149
Tssr92554 10 19679991 to 19679993 2 + TSS region transcription start site region 92554
Cpgi1343 10 19712505 to 19712802 297 CpG island CpG island 1343
Il20ra 10 19712570 to 19760053 47483 + protein coding gene interleukin 20 receptor, alpha
Gm33332 10 19716152 to 19718704 2552 - antisense lncRNA gene predicted gene, 33332
Tssr96931 10 19718686 to 19718723 37 - TSS region transcription start site region 96931
Tssr96932 10 19718782 to 19718794 12 - TSS region transcription start site region 96932
D10Csu1 10 19750280 to 19750721 441 DNA segment DNA segment, Chr 10, Central Connecticut State University 1
Gm25256 10 19782854 to 19782960 106 + snRNA gene predicted gene, 25256
Slc35d3 10 19847916 to 19851459 3543 - protein coding gene solute carrier family 35, member D3
Cpgi1344 10 19848955 to 19851976 3021 CpG island CpG island 1344
Tssr96933 10 19850882 to 19850895 13 - TSS region transcription start site region 96933
Tssr96934 10 19851208 to 19851221 13 - TSS region transcription start site region 96934
Tssr3150 10 19851419 to 19851442 23 - TSS region transcription start site region 3150
Tssr96935 10 19851512 to 19851568 56 - TSS region transcription start site region 96935
Tssr96936 10 19851598 to 19851611 13 - TSS region transcription start site region 96936
Pex7 10 19860090 to 19907674 47584 - protein coding gene peroxisomal biogenesis factor 7
Gm48714 10 19873007 to 19874447 1440 - unclassified gene predicted gene, 48714
Cpgi1345 10 19907028 to 19907771 743 CpG island CpG island 1345
Tssr96937 10 19907622 to 19907627 5 - TSS region transcription start site region 96937
Tssr96938 10 19907631 to 19907640 9 - TSS region transcription start site region 96938
Tssr96939 10 19907645 to 19907689 44 - TSS region transcription start site region 96939
D10Mit169 10 19910064 to 19910146 82 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 169
Cpgi1346 10 19933503 to 19935327 1824 CpG island CpG island 1346
Tssr92555 10 19933557 to 19933566 9 + TSS region transcription start site region 92555
Tssr3151 10 19933579 to 19933591 12 + TSS region transcription start site region 3151
Tssr92556 10 19933598 to 19933613 15 + TSS region transcription start site region 92556
Tssr92557 10 19933615 to 19933625 10 + TSS region transcription start site region 92557
Tssr92558 10 19933687 to 19933698 11 + TSS region transcription start site region 92558
Tssr92559 10 19933924 to 19933953 29 + TSS region transcription start site region 92559
Tssr92560 10 19934070 to 19934105 35 + TSS region transcription start site region 92560
Tssr92561 10 19934180 to 19934198 18 + TSS region transcription start site region 92561
Tssr92562 10 19934234 to 19934286 52 + TSS region transcription start site region 92562
Tssr92563 10 19934292 to 19934317 25 + TSS region transcription start site region 92563
Map3k5 10 19934472 to 20142753 208281 + protein coding gene mitogen-activated protein kinase kinase kinase 5
Tssr3152 10 19939481 to 19939492 11 + TSS region transcription start site region 3152
Tssr3153 10 19939521 to 19939530 9 + TSS region transcription start site region 3153
Tssr92564 10 19957117 to 19957123 6 + TSS region transcription start site region 92564
Tssr92565 10 20010358 to 20010361 3 + TSS region transcription start site region 92565