Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 10:18642049-19592060

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159 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arfgef3 10 18588011 to 18743758 155747 - protein coding gene ARFGEF family member 3
Tssr96840 10 18653731 to 18653737 6 - TSS region transcription start site region 96840
Tssr96841 10 18679088 to 18679091 3 - TSS region transcription start site region 96841
Cpgi1336 10 18743459 to 18744018 559 CpG island CpG island 1336
Gm32926 10 18743469 to 18837979 94510 + antisense lncRNA gene predicted gene, 32926
Tssr96842 10 18743672 to 18743684 12 - TSS region transcription start site region 96842
Tssr96843 10 18743691 to 18743760 69 - TSS region transcription start site region 96843
Tssr96844 10 18743911 to 18743972 61 - TSS region transcription start site region 96844
Gm4922 10 18779727 to 18786793 7066 - protein coding gene predicted gene 4922
Tssr96845 10 18786778 to 18786789 11 - TSS region transcription start site region 96845
Tssr96846 10 18789473 to 18789474 1 - TSS region transcription start site region 96846
4930444F02Rik 10 18797299 to 18831930 34631 - lincRNA gene RIKEN cDNA 4930444F02 gene
Tssr96847 10 18800435 to 18800440 5 - TSS region transcription start site region 96847
Tssr96848 10 18805066 to 18805070 4 - TSS region transcription start site region 96848
D10Mit168 10 18806716 to 18806860 144 DNA segment DNA segment, Chr 10, Massachusetts Institute of Technology 168
Tssr96849 10 18831814 to 18831825 11 - TSS region transcription start site region 96849
Tssr96850 10 18831900 to 18831913 13 - TSS region transcription start site region 96850
Tssr96851 10 18831916 to 18831941 25 - TSS region transcription start site region 96851
Cpgi1337 10 18844513 to 18845547 1034 CpG island CpG island 1337
Tssr92499 10 18844966 to 18844977 11 + TSS region transcription start site region 92499
Tssr92500 10 18845012 to 18845023 11 + TSS region transcription start site region 92500
Tssr92501 10 18845056 to 18845067 11 + TSS region transcription start site region 92501
Perp 10 18845071 to 18857073 12002 + protein coding gene PERP, TP53 apoptosis effector
Tssr92502 10 18845075 to 18845082 7 + TSS region transcription start site region 92502
Tssr92503 10 18845096 to 18845112 16 + TSS region transcription start site region 92503
Tssr92504 10 18845124 to 18845139 15 + TSS region transcription start site region 92504
Tssr96852 10 18848021 to 18848032 11 - TSS region transcription start site region 96852
Tssr96853 10 18848063 to 18848070 7 - TSS region transcription start site region 96853
Tssr92505 10 18853567 to 18853618 51 + TSS region transcription start site region 92505
Tssr92506 10 18855787 to 18855816 29 + TSS region transcription start site region 92506
Gm48483 10 18879735 to 18887029 7294 - lincRNA gene predicted gene, 48483
Tssr92507 10 18917272 to 18917290 18 + TSS region transcription start site region 92507
Tssr96854 10 18941596 to 18941601 5 - TSS region transcription start site region 96854
Tssr92508 10 18943854 to 18943865 11 + TSS region transcription start site region 92508
Tssr3147 10 18953378 to 18953379 1 + TSS region transcription start site region 3147
Tssr96855 10 18957941 to 18957989 48 - TSS region transcription start site region 96855
Tssr96856 10 18996479 to 18996492 13 - TSS region transcription start site region 96856
Tnfaip3 10 19000910 to 19015410 14500 - protein coding gene tumor necrosis factor, alpha-induced protein 3
Tssr96857 10 19001570 to 19001610 40 - TSS region transcription start site region 96857
Tssr96858 10 19004960 to 19004976 16 - TSS region transcription start site region 96858
Tssr96859 10 19005009 to 19005021 12 - TSS region transcription start site region 96859
Tssr96860 10 19005574 to 19005589 15 - TSS region transcription start site region 96860
Tssr96861 10 19005598 to 19005609 11 - TSS region transcription start site region 96861
Tssr96862 10 19005680 to 19005691 11 - TSS region transcription start site region 96862
Tssr96863 10 19007886 to 19007900 14 - TSS region transcription start site region 96863
Tssr96864 10 19008373 to 19008394 21 - TSS region transcription start site region 96864
Tssr96865 10 19008703 to 19008707 4 - TSS region transcription start site region 96865
Tssr92509 10 19008880 to 19008892 12 + TSS region transcription start site region 92509
Tssr96866 10 19009234 to 19009249 15 - TSS region transcription start site region 96866
Tssr96867 10 19009430 to 19009442 12 - TSS region transcription start site region 96867
Tssr96868 10 19009478 to 19009484 6 - TSS region transcription start site region 96868
Tssr92510 10 19009599 to 19009614 15 + TSS region transcription start site region 92510
Tssr92511 10 19009656 to 19009677 21 + TSS region transcription start site region 92511
Tssr96869 10 19009693 to 19009711 18 - TSS region transcription start site region 96869
Tssr96870 10 19011800 to 19011811 11 - TSS region transcription start site region 96870
Tssr96871 10 19011812 to 19011823 11 - TSS region transcription start site region 96871
Tssr96872 10 19011897 to 19011913 16 - TSS region transcription start site region 96872
Tssr96873 10 19011932 to 19011941 9 - TSS region transcription start site region 96873
Tssr96874 10 19011948 to 19011973 25 - TSS region transcription start site region 96874
Tssr92512 10 19012083 to 19012104 21 + TSS region transcription start site region 92512
Tssr96875 10 19012168 to 19012184 16 - TSS region transcription start site region 96875
Tssr96876 10 19012542 to 19012547 5 - TSS region transcription start site region 96876
Tssr96877 10 19014535 to 19014548 13 - TSS region transcription start site region 96877
Tssr96878 10 19014549 to 19014589 40 - TSS region transcription start site region 96878
Cpgi1338 10 19014772 to 19015684 912 CpG island CpG island 1338
Tssr96879 10 19015204 to 19015209 5 - TSS region transcription start site region 96879
Tssr96880 10 19015259 to 19015271 12 - TSS region transcription start site region 96880
Tssr96881 10 19015278 to 19015300 22 - TSS region transcription start site region 96881
Tssr96882 10 19015303 to 19015317 14 - TSS region transcription start site region 96882
Tssr96883 10 19015347 to 19015379 32 - TSS region transcription start site region 96883
Tssr92513 10 19015573 to 19015588 15 + TSS region transcription start site region 92513
Tssr92514 10 19015697 to 19015707 10 + TSS region transcription start site region 92514
Tssr96884 10 19015868 to 19015872 4 - TSS region transcription start site region 96884
Tssr92515 10 19044176 to 19044189 13 + TSS region transcription start site region 92515
Tssr92516 10 19061366 to 19061368 2 + TSS region transcription start site region 92516
Tssr96885 10 19061881 to 19061892 11 - TSS region transcription start site region 96885
Tssr96886 10 19062111 to 19062114 3 - TSS region transcription start site region 96886
Tssr96887 10 19062128 to 19062137 9 - TSS region transcription start site region 96887
Tssr96888 10 19062138 to 19062158 20 - TSS region transcription start site region 96888
Tssr96889 10 19062166 to 19062183 17 - TSS region transcription start site region 96889
Tssr96890 10 19062195 to 19062200 5 - TSS region transcription start site region 96890
Tssr92517 10 19062636 to 19062646 10 + TSS region transcription start site region 92517
Tssr92518 10 19062692 to 19062702 10 + TSS region transcription start site region 92518
Tssr92519 10 19062741 to 19062756 15 + TSS region transcription start site region 92519
Tssr92520 10 19062757 to 19062787 30 + TSS region transcription start site region 92520
Tssr92521 10 19062807 to 19062816 9 + TSS region transcription start site region 92521
Tssr92522 10 19063772 to 19063780 8 + TSS region transcription start site region 92522
Tssr96891 10 19065152 to 19065163 11 - TSS region transcription start site region 96891
Tssr96892 10 19065164 to 19065171 7 - TSS region transcription start site region 96892
Tssr96893 10 19065205 to 19065217 12 - TSS region transcription start site region 96893
Tssr96894 10 19065260 to 19065269 9 - TSS region transcription start site region 96894
Tssr96895 10 19065295 to 19065310 15 - TSS region transcription start site region 96895
Tssr96896 10 19065367 to 19065372 5 - TSS region transcription start site region 96896
Tssr92523 10 19065492 to 19065503 11 + TSS region transcription start site region 92523
Tssr92524 10 19065505 to 19065510 5 + TSS region transcription start site region 92524
Tssr92525 10 19065527 to 19065543 16 + TSS region transcription start site region 92525
Tssr92526 10 19065613 to 19065619 6 + TSS region transcription start site region 92526
Tssr92527 10 19067271 to 19067282 11 + TSS region transcription start site region 92527
1700124M09Rik 10 19086626 to 19087228 602 - lincRNA gene RIKEN cDNA 1700124M09 gene
Tssr92528 10 19087306 to 19087315 9 + TSS region transcription start site region 92528
Tssr92529 10 19087339 to 19087344 5 + TSS region transcription start site region 92529
Gm48545 10 19094050 to 19101595 7545 - lincRNA gene predicted gene, 48545
Tpi-rs5 10 19101545 to 19102318 773 + pseudogene triosephosphate isomerase related sequence 5
Tssr96897 10 19117049 to 19117060 11 - TSS region transcription start site region 96897
Tssr96898 10 19117075 to 19117078 3 - TSS region transcription start site region 96898
Tssr96899 10 19117101 to 19117106 5 - TSS region transcription start site region 96899
Tssr92530 10 19117429 to 19117446 17 + TSS region transcription start site region 92530
Tssr96900 10 19122218 to 19122262 44 - TSS region transcription start site region 96900
Tssr96901 10 19122339 to 19122357 18 - TSS region transcription start site region 96901
Tssr92531 10 19122478 to 19122491 13 + TSS region transcription start site region 92531
Gm48546 10 19123207 to 19123436 229 + pseudogene predicted gene, 48546
Tssr92532 10 19141740 to 19141764 24 + TSS region transcription start site region 92532
Gm20139 10 19141751 to 19206702 64951 + lincRNA gene predicted gene, 20139
Tssr96902 10 19170687 to 19170696 9 - TSS region transcription start site region 96902
Tssr92533 10 19185157 to 19185173 16 + TSS region transcription start site region 92533
Tssr92534 10 19185209 to 19185224 15 + TSS region transcription start site region 92534
Tssr96903 10 19185843 to 19185848 5 - TSS region transcription start site region 96903
Tssr96904 10 19185857 to 19185876 19 - TSS region transcription start site region 96904
Tssr96905 10 19185884 to 19185900 16 - TSS region transcription start site region 96905
Tssr96906 10 19185901 to 19185911 10 - TSS region transcription start site region 96906
Tssr96907 10 19186451 to 19186456 5 - TSS region transcription start site region 96907
Tssr96908 10 19186460 to 19186471 11 - TSS region transcription start site region 96908
Tssr92535 10 19186576 to 19186598 22 + TSS region transcription start site region 92535
Tssr92536 10 19187308 to 19187341 33 + TSS region transcription start site region 92536
Tssr96909 10 19187561 to 19187588 27 - TSS region transcription start site region 96909
Tssr96910 10 19188476 to 19188544 68 - TSS region transcription start site region 96910
Tssr96911 10 19188651 to 19188660 9 - TSS region transcription start site region 96911
Gm40607 10 19235311 to 19243553 8242 - lncRNA gene predicted gene, 40607
Cpgi1339 10 19261939 to 19262143 204 CpG island CpG island 1339
Gm7213 10 19262034 to 19262983 949 + pseudogene predicted gene 7213
Gm33056 10 19290989 to 19325817 34828 + lincRNA gene predicted gene, 33056
Tssr96912 10 19321714 to 19321720 6 - TSS region transcription start site region 96912
Tssr92537 10 19352689 to 19352737 48 + TSS region transcription start site region 92537
Cpgi1340 10 19352952 to 19353330 378 CpG island CpG island 1340
Tssr92538 10 19356388 to 19356391 3 + TSS region transcription start site region 92538
Olig3 10 19356539 to 19358604 2065 + protein coding gene oligodendrocyte transcription factor 3
Tssr92539 10 19356558 to 19356565 7 + TSS region transcription start site region 92539
Cpgi1341 10 19356679 to 19357710 1031 CpG island CpG island 1341
D10Mit281 10 19444878 to 19444992 114 DNA segment DNA Segment, Chr 10 Massachusetts Institute of Technology 281
Tssr92540 10 19486688 to 19486729 41 + TSS region transcription start site region 92540
Gm33104 10 19486715 to 19507311 20596 + lincRNA gene predicted gene, 33104
Tssr92541 10 19494637 to 19494649 12 + TSS region transcription start site region 92541
Tssr92542 10 19494708 to 19494738 30 + TSS region transcription start site region 92542
Tssr96913 10 19506069 to 19506080 11 - TSS region transcription start site region 96913
Tssr96914 10 19506085 to 19506102 17 - TSS region transcription start site region 96914
Tssr92543 10 19506246 to 19506257 11 + TSS region transcription start site region 92543
Gm48563 10 19519302 to 19522650 3348 - unclassified gene predicted gene, 48563
Tssr92544 10 19531767 to 19531778 11 + TSS region transcription start site region 92544
Tssr96915 10 19577562 to 19577589 27 - TSS region transcription start site region 96915
Tssr96916 10 19583095 to 19583109 14 - TSS region transcription start site region 96916
Tssr96917 10 19584236 to 19584253 17 - TSS region transcription start site region 96917
Tssr3148 10 19589686 to 19589698 12 + TSS region transcription start site region 3148
Tssr96918 10 19591470 to 19591476 6 - TSS region transcription start site region 96918
Cpgi1342 10 19591657 to 19592410 753 CpG island CpG island 1342
Tssr96919 10 19591679 to 19591692 13 - TSS region transcription start site region 96919
Tssr96920 10 19591701 to 19591712 11 - TSS region transcription start site region 96920
Tssr96921 10 19591852 to 19591856 4 - TSS region transcription start site region 96921
Tssr92545 10 19591952 to 19592087 135 + TSS region transcription start site region 92545
Ifngr1 10 19591958 to 19610225 18267 + protein coding gene interferon gamma receptor 1